Wall clock time and date at job start Mon Mar 30 2020 06:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46625 * 2 1 4 4 C 1.50697 * 109.47472 * 239.99913 * 2 1 3 5 5 H 1.07997 * 119.99916 * 239.99721 * 4 2 1 6 6 C 1.37874 * 120.00123 * 59.99813 * 4 2 1 7 7 N 1.31517 * 120.00014 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00353 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47103 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47570 * 119.99781 * 8 6 4 11 11 H 1.48505 * 109.47295 * 240.00045 * 8 6 4 12 12 C 1.52996 * 109.47039 * 119.99714 * 2 1 3 13 13 O 1.45203 * 109.46967 * 300.00249 * 12 2 1 14 14 C 1.34727 * 116.99749 * 180.02562 * 13 12 2 15 15 O 1.21488 * 120.00251 * 0.02562 * 14 13 12 16 16 C 1.47604 * 120.00039 * 180.02562 * 14 13 12 17 17 C 1.39706 * 120.11881 * 0.24942 * 16 14 13 18 18 C 1.37819 * 119.87101 * 180.23342 * 17 16 14 19 19 C 1.38672 * 120.12089 * 359.51579 * 18 17 16 20 20 F 1.35108 * 119.87152 * 180.27863 * 19 18 17 21 21 C 1.38666 * 120.25099 * 0.25795 * 19 18 17 22 22 C 1.37811 * 120.12697 * 359.97438 * 21 19 18 23 23 H 1.08998 * 109.47314 * 299.99921 * 1 2 3 24 24 H 1.09001 * 109.47038 * 60.00311 * 1 2 3 25 25 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46598 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47158 * 299.99615 * 3 2 1 28 28 H 1.08990 * 109.47347 * 59.99754 * 3 2 1 29 29 H 0.97005 * 119.99997 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46934 * 180.02562 * 12 2 1 31 31 H 1.08992 * 109.47301 * 60.00459 * 12 2 1 32 32 H 1.07998 * 120.06388 * 0.02593 * 17 16 14 33 33 H 1.08002 * 119.94069 * 179.79916 * 18 17 16 34 34 H 1.08005 * 119.93448 * 180.02562 * 21 19 18 35 35 H 1.07994 * 120.06823 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5884 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1467 -2.2870 -3.6037 10 1 1.1663 -1.5868 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 6 2.0400 -0.7212 1.2492 13 8 1.5559 -0.0366 2.4348 14 6 1.9183 -0.5482 3.6273 15 8 2.6200 -1.5388 3.6754 16 6 1.4629 0.0948 4.8754 17 6 0.6517 1.2310 4.8230 18 6 0.2334 1.8302 5.9916 19 6 0.6080 1.3014 7.2176 20 9 0.1904 1.8895 8.3600 21 6 1.4091 0.1711 7.2754 22 6 1.8372 -0.4335 6.1134 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6765 1.9564 0.8899 29 1 0.7090 1.1613 -3.4845 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7488 1.2493 32 1 0.3557 1.6410 3.8687 33 1 -0.3911 2.7105 5.9524 34 1 1.6975 -0.2367 8.2330 35 1 2.4608 -1.3140 6.1595 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184817956.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:09 Heat of formation + Delta-G solvation = -129.407276 kcal Electronic energy + Delta-G solvation = -19623.406480 eV Core-core repulsion = 16307.223791 eV Total energy + Delta-G solvation = -3316.182689 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.03865 -41.58982 -39.66489 -38.18538 -36.61678 -33.31411 -32.29544 -31.97385 -27.68298 -27.55778 -27.15324 -24.98359 -24.04315 -22.06965 -20.72769 -19.27111 -18.65714 -17.90287 -17.73096 -17.36254 -16.95065 -16.67988 -16.67764 -15.66311 -15.02139 -14.83441 -14.77559 -14.63450 -14.26948 -13.97623 -13.51037 -13.48018 -13.20402 -13.11369 -12.82823 -12.59836 -12.32792 -12.14244 -12.09720 -11.74447 -11.72800 -11.28109 -11.19966 -10.72358 -10.39925 -10.24972 -9.93500 -8.04320 -6.22117 -0.54372 0.15460 1.38544 1.42548 1.45690 1.54956 1.72047 2.45814 2.55876 3.06749 3.19377 3.58136 3.69527 3.83698 4.13440 4.20314 4.26838 4.27445 4.59883 4.74038 4.83971 4.87984 4.96679 5.03492 5.06040 5.20010 5.21359 5.24243 5.37163 5.55340 5.65078 5.65768 5.68909 6.09278 6.18620 6.37819 6.69166 6.83207 7.45974 8.95355 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.044794 B = 0.003867 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.929386 B = 7239.110198 C = 7672.982879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.060 3.940 3 C -0.118 4.118 4 C -0.534 4.534 5 H 0.049 0.951 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.951 3.049 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.097 3.903 13 O -0.345 6.345 14 C 0.499 3.501 15 O -0.543 6.543 16 C -0.151 4.151 17 C -0.032 4.032 18 C -0.160 4.160 19 C 0.129 3.871 20 F -0.134 7.134 21 C -0.157 4.157 22 C -0.030 4.030 23 H 0.035 0.965 24 H 0.063 0.937 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.262 0.738 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.152 0.848 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.762 2.463 17.767 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.060 3.940 3 C -0.176 4.176 4 C -0.572 4.572 5 H 0.067 0.933 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.778 3.222 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.206 1.206 12 C 0.024 3.976 13 O -0.260 6.260 14 C 0.345 3.655 15 O -0.436 6.436 16 C -0.152 4.152 17 C -0.050 4.050 18 C -0.179 4.179 19 C 0.110 3.890 20 F -0.112 7.112 21 C -0.175 4.175 22 C -0.048 4.048 23 H 0.054 0.946 24 H 0.082 0.918 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.170 0.830 33 H 0.185 0.815 34 H 0.189 0.811 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.660 2.319 17.627 17.856 hybrid contribution 0.420 -0.594 -1.021 1.254 sum -1.239 1.725 16.606 16.741 Atomic orbital electron populations 1.21620 0.96945 0.98622 1.00431 1.18286 0.93743 0.93339 0.88632 1.21621 0.97734 0.97833 1.00433 1.21230 1.32287 1.12470 0.91191 0.93295 1.25484 0.94975 0.95555 1.01090 1.69943 1.36716 1.23236 1.23756 0.85611 0.78154 0.78674 0.79796 1.19782 1.20573 1.20586 1.23304 0.97657 0.95272 0.81377 1.86542 1.69182 1.55553 1.14766 1.21678 0.76897 0.81631 0.85247 1.90780 1.37320 1.26827 1.88626 1.19290 1.05605 1.00012 0.90284 1.21490 0.91799 0.91779 0.99981 1.21367 1.03538 1.03067 0.89883 1.18166 0.95894 0.92924 0.82044 1.91538 1.88146 1.83097 1.48410 1.21296 0.99936 0.95838 1.00460 1.21229 0.95586 0.98541 0.89426 0.94624 0.91831 0.96201 0.96207 0.91824 0.94628 0.92852 0.93116 0.93106 0.82995 0.81455 0.81059 0.83175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.11 71.98 0.58 -4.98 16 2 C 0.06 2.91 0.58 -52.93 -0.03 2.88 16 3 C -0.12 -5.57 8.11 71.98 0.58 -4.98 16 4 C -0.53 -28.42 8.01 25.60 0.21 -28.21 16 5 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 6 C 0.03 1.53 5.15 84.65 0.44 1.97 16 7 N -0.90 -48.27 9.35 21.45 0.20 -48.07 16 8 Si 0.95 42.31 29.54 68.60 2.03 44.33 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 C 0.10 4.27 4.27 71.98 0.31 4.57 16 13 O -0.34 -13.26 8.13 -56.37 -0.46 -13.72 16 14 C 0.50 17.47 7.89 70.29 0.55 18.02 16 15 O -0.54 -21.61 16.13 19.88 0.32 -21.29 16 16 C -0.15 -3.97 5.87 -20.09 -0.12 -4.08 16 17 C -0.03 -0.71 9.61 22.53 0.22 -0.50 16 18 C -0.16 -2.78 10.01 22.27 0.22 -2.56 16 19 C 0.13 2.24 7.31 22.48 0.16 2.41 16 20 F -0.13 -2.33 17.26 44.97 0.78 -1.55 16 21 C -0.16 -2.56 10.01 22.27 0.22 -2.34 16 22 C -0.03 -0.63 9.59 22.52 0.22 -0.41 16 23 H 0.03 1.48 7.68 -2.39 -0.02 1.47 16 24 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 25 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 28 H 0.03 1.48 7.68 -2.39 -0.02 1.47 16 29 H 0.26 13.43 8.31 -92.70 -0.77 12.66 16 30 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.15 3.35 7.61 -2.91 -0.02 3.33 16 33 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.15 3.05 7.65 -2.91 -0.02 3.03 16 Total: -1.00 -59.31 303.73 7.52 -51.79 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 1.09 Total: 6.72 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: 3.56 Total: -18.20 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.20 Total: -48.07 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.14 Total: -35.01 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.78 Total: -1.55 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -59.31 7.52 -51.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184817956.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.622 kcal (2) G-P(sol) polarization free energy of solvation -59.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds