Wall clock time and date at job start Mon Mar 30 2020 07:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00087 * 2 1 4 4 H 1.48496 * 109.47561 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47504 * 299.99986 * 3 2 1 6 6 H 1.48507 * 109.47110 * 59.99748 * 3 2 1 7 7 C 1.37879 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00132 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47144 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47420 * 180.02562 * 10 9 7 12 12 N 1.46889 * 109.47151 * 180.02562 * 11 10 9 13 13 C 1.46905 * 110.99994 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.46922 * 325.00553 * 13 12 11 15 15 C 1.50699 * 109.47173 * 205.00053 * 13 12 11 16 16 N 1.29027 * 124.91918 * 314.95250 * 15 13 12 17 17 C 1.31776 * 117.12568 * 180.02562 * 16 15 13 18 18 C 1.33635 * 114.50289 * 0.02562 * 17 16 15 19 19 S 1.70977 * 124.91502 * 135.00174 * 15 13 12 20 20 C 1.53001 * 109.46943 * 84.99767 * 13 12 11 21 21 C 1.53003 * 117.49978 * 248.74509 * 20 13 12 22 22 C 1.53010 * 117.49623 * 180.08835 * 20 13 12 23 23 H 0.96997 * 120.00062 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47129 * 60.00578 * 9 7 2 25 25 H 1.08997 * 109.47079 * 300.00072 * 9 7 2 26 26 H 1.09002 * 109.47078 * 60.00041 * 10 9 7 27 27 H 1.08997 * 109.47148 * 299.99976 * 10 9 7 28 28 H 1.09005 * 109.46534 * 60.00090 * 11 10 9 29 29 H 1.09002 * 109.46872 * 300.00561 * 11 10 9 30 30 H 1.00903 * 111.00393 * 56.04823 * 12 11 10 31 31 H 1.08004 * 122.74701 * 180.02562 * 17 16 15 32 32 H 1.08001 * 126.03943 * 179.97438 * 18 17 16 33 33 H 1.08998 * 115.55279 * 34.42653 * 20 13 12 34 34 H 1.09001 * 117.49667 * 0.02562 * 21 20 13 35 35 H 1.09001 * 117.49390 * 145.02377 * 21 20 13 36 36 H 1.08998 * 117.49677 * 214.98236 * 22 20 13 37 37 H 1.08996 * 117.49524 * 359.97438 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9872 -0.0012 12 7 2.4350 -6.1036 -0.0006 13 6 1.7347 -7.3950 -0.0018 14 1 0.8208 -7.3133 0.5867 15 6 2.6266 -8.4506 0.5993 16 7 3.8769 -8.6067 0.3216 17 6 4.5121 -9.5826 0.9386 18 6 3.7555 -10.2894 1.7834 19 16 2.1278 -9.6156 1.7470 20 6 1.3826 -7.7828 -1.4393 21 6 -0.0965 -7.7760 -1.8308 22 6 0.6424 -9.1048 -1.6532 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8720 -3.6043 0.8895 27 1 2.8720 -3.6043 -0.8905 28 1 0.8541 -5.0446 -0.8915 29 1 0.8534 -5.0451 0.8885 30 1 3.0693 -6.0366 0.7813 31 1 5.5586 -9.7939 0.7749 32 1 4.0836 -11.1259 2.3825 33 1 2.1054 -7.4824 -2.1978 34 1 -0.8186 -7.4948 -1.0643 35 1 -0.3466 -7.4712 -2.8470 36 1 0.8780 -9.6736 -2.5527 37 1 0.4068 -9.6982 -0.7699 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185415332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:28 Heat of formation + Delta-G solvation = 59.032578 kcal Electronic energy + Delta-G solvation = -17316.868198 eV Core-core repulsion = 14607.362802 eV Total energy + Delta-G solvation = -2709.505396 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.99523 -38.00134 -35.58341 -33.45270 -31.71676 -30.08794 -27.58464 -25.51856 -24.05828 -22.48439 -22.30606 -21.27889 -20.16800 -19.22311 -18.14625 -16.30515 -15.99289 -15.89420 -15.34322 -14.67810 -14.47200 -14.25335 -14.06702 -13.71214 -13.20845 -12.78914 -12.31528 -11.80529 -11.73150 -11.58898 -11.53277 -11.36781 -10.84137 -10.56483 -10.51901 -10.31559 -10.24467 -9.71734 -9.65906 -9.54539 -9.30584 -9.09466 -8.98610 -8.31317 -8.21722 -5.96417 -3.98025 0.52235 1.15337 1.55575 2.71540 3.33938 3.41271 3.46243 3.62809 4.08095 4.22053 4.50295 4.72262 4.80549 4.96203 5.03297 5.12389 5.21761 5.31138 5.39624 5.50847 5.57248 5.80239 5.83593 5.93858 5.96643 6.04691 6.26796 6.34651 6.74850 6.78753 7.17059 7.28649 7.58716 7.65757 7.72807 7.87543 8.04439 8.48050 9.09423 9.65870 11.15105 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027753 B = 0.003583 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.664334 B = 7812.035553 C = 8381.941685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.059 3.941 12 N -0.667 5.667 13 C 0.196 3.804 14 H 0.062 0.938 15 C 0.060 3.940 16 N -0.449 5.449 17 C 0.040 3.960 18 C -0.264 4.264 19 S 0.107 5.893 20 C -0.127 4.127 21 C -0.173 4.173 22 C -0.184 4.184 23 H 0.259 0.741 24 H 0.017 0.983 25 H 0.013 0.987 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.024 0.976 30 H 0.344 0.656 31 H 0.176 0.824 32 H 0.176 0.824 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 -23.126 2.087 23.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.144 4.144 11 C -0.070 4.070 12 N -0.299 5.299 13 C 0.083 3.917 14 H 0.079 0.921 15 C -0.219 4.219 16 N -0.163 5.163 17 C -0.111 4.111 18 C -0.403 4.403 19 S 0.361 5.639 20 C -0.147 4.147 21 C -0.211 4.211 22 C -0.222 4.222 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.032 0.968 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.163 0.837 31 H 0.193 0.807 32 H 0.193 0.807 33 H 0.138 0.862 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.088 -22.873 1.550 23.020 hybrid contribution 1.070 0.599 0.860 1.498 sum 3.158 -22.274 2.410 22.625 Atomic orbital electron populations 1.69976 1.06044 1.26401 1.51227 1.25027 0.94845 0.99248 0.95430 0.86548 0.80183 0.83833 0.77520 1.19717 1.21023 1.21090 1.21302 0.93121 0.91042 1.50068 0.92609 1.19066 0.94001 0.91345 0.97125 1.21619 0.99188 0.92735 1.00871 1.22250 0.94041 0.90528 1.00131 1.60503 1.19672 0.99425 1.50318 1.19646 0.92084 0.86369 0.93616 0.92078 1.27235 0.94395 1.01420 0.98855 1.66233 1.06563 1.19026 1.24432 1.21931 1.01792 0.92229 0.95170 1.27076 0.95951 1.08476 1.08803 1.84058 1.12293 1.27206 1.40377 1.22215 0.95465 1.00434 0.96632 1.23067 0.94473 1.00392 1.03122 1.22984 1.05159 0.90910 1.03127 0.93133 0.96490 0.96837 0.93688 0.92366 0.90891 0.95749 0.83735 0.80742 0.80690 0.86246 0.88735 0.88341 0.88713 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.24 5.41 -26.73 -0.14 -2.38 16 11 C 0.06 1.02 5.48 -3.83 -0.02 1.00 16 12 N -0.67 -10.29 6.27 -107.95 -0.68 -10.97 16 13 C 0.20 2.57 2.74 -68.86 -0.19 2.38 16 14 H 0.06 0.77 7.56 -51.93 -0.39 0.38 16 15 C 0.06 0.74 5.55 -13.46 -0.07 0.67 16 16 N -0.45 -5.95 10.50 -11.86 -0.12 -6.08 16 17 C 0.04 0.42 11.35 -19.19 -0.22 0.20 16 18 C -0.26 -2.32 11.37 29.12 0.33 -1.99 16 19 S 0.11 1.04 23.18 -107.50 -2.49 -1.45 16 20 C -0.13 -1.58 5.22 -90.61 -0.47 -2.06 16 21 C -0.17 -1.90 10.18 -26.69 -0.27 -2.17 16 22 C -0.18 -1.89 9.87 -26.69 -0.26 -2.16 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.07 1.28 8.01 -51.93 -0.42 0.87 16 29 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 30 H 0.34 5.32 8.35 -39.29 -0.33 4.99 16 31 H 0.18 1.38 8.06 -52.48 -0.42 0.95 16 32 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.12 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.09 1.00 8.05 -51.93 -0.42 0.59 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 328.14 15.07 4.95 4.95 Total: -1.00 -31.17 328.14 -10.25 -41.42 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.74 Total: 1.46 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -1.87 Total: -19.78 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -0.07 Total: -43.55 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.49 Total: -1.45 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.17 -10.25 -41.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185415332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.454 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds