Wall clock time and date at job start Mon Mar 30 2020 07:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00087 * 2 1 4 4 H 1.48496 * 109.47561 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47504 * 299.99986 * 3 2 1 6 6 H 1.48507 * 109.47110 * 59.99748 * 3 2 1 7 7 C 1.37879 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00132 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47144 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47420 * 180.02562 * 10 9 7 12 12 N 1.46889 * 109.47151 * 180.02562 * 11 10 9 13 13 C 1.46905 * 110.99994 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.46922 * 325.00553 * 13 12 11 15 15 C 1.50699 * 109.47173 * 205.00053 * 13 12 11 16 16 N 1.29027 * 124.91918 * 314.95250 * 15 13 12 17 17 C 1.31776 * 117.12568 * 180.02562 * 16 15 13 18 18 C 1.33635 * 114.50289 * 0.02562 * 17 16 15 19 19 S 1.70977 * 124.91502 * 135.00174 * 15 13 12 20 20 C 1.53001 * 109.46943 * 84.99767 * 13 12 11 21 21 C 1.53003 * 117.49978 * 248.74509 * 20 13 12 22 22 C 1.53010 * 117.49623 * 180.08835 * 20 13 12 23 23 H 0.96997 * 120.00062 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47129 * 60.00578 * 9 7 2 25 25 H 1.08997 * 109.47079 * 300.00072 * 9 7 2 26 26 H 1.09002 * 109.47078 * 60.00041 * 10 9 7 27 27 H 1.08997 * 109.47148 * 299.99976 * 10 9 7 28 28 H 1.09005 * 109.46534 * 60.00090 * 11 10 9 29 29 H 1.09002 * 109.46872 * 300.00561 * 11 10 9 30 30 H 1.00903 * 111.00393 * 56.04823 * 12 11 10 31 31 H 1.08004 * 122.74701 * 180.02562 * 17 16 15 32 32 H 1.08001 * 126.03943 * 179.97438 * 18 17 16 33 33 H 1.08998 * 115.55279 * 34.42653 * 20 13 12 34 34 H 1.09001 * 117.49667 * 0.02562 * 21 20 13 35 35 H 1.09001 * 117.49390 * 145.02377 * 21 20 13 36 36 H 1.08998 * 117.49677 * 214.98236 * 22 20 13 37 37 H 1.08996 * 117.49524 * 359.97438 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9872 -0.0012 12 7 2.4350 -6.1036 -0.0006 13 6 1.7347 -7.3950 -0.0018 14 1 0.8208 -7.3133 0.5867 15 6 2.6266 -8.4506 0.5993 16 7 3.8769 -8.6067 0.3216 17 6 4.5121 -9.5826 0.9386 18 6 3.7555 -10.2894 1.7834 19 16 2.1278 -9.6156 1.7470 20 6 1.3826 -7.7828 -1.4393 21 6 -0.0965 -7.7760 -1.8308 22 6 0.6424 -9.1048 -1.6532 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8720 -3.6043 0.8895 27 1 2.8720 -3.6043 -0.8905 28 1 0.8541 -5.0446 -0.8915 29 1 0.8534 -5.0451 0.8885 30 1 3.0693 -6.0366 0.7813 31 1 5.5586 -9.7939 0.7749 32 1 4.0836 -11.1259 2.3825 33 1 2.1054 -7.4824 -2.1978 34 1 -0.8186 -7.4948 -1.0643 35 1 -0.3466 -7.4712 -2.8470 36 1 0.8780 -9.6736 -2.5527 37 1 0.4068 -9.6982 -0.7699 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185415332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:28 Heat of formation + Delta-G solvation = 39.590081 kcal Electronic energy + Delta-G solvation = -17317.711288 eV Core-core repulsion = 14607.362802 eV Total energy + Delta-G solvation = -2710.348486 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.85288 -38.97552 -36.96504 -35.30290 -33.34876 -31.29541 -28.90370 -27.10153 -25.05839 -24.08568 -23.26334 -22.16341 -21.94716 -20.09467 -19.04261 -18.43999 -17.09119 -16.89521 -16.49997 -16.30997 -15.68982 -15.47978 -15.22707 -14.69222 -14.35757 -14.11557 -14.03499 -13.52096 -13.19297 -12.82286 -12.59972 -12.48724 -12.42888 -12.35742 -12.21527 -11.57082 -11.44747 -11.28550 -11.15119 -11.04946 -10.54714 -10.49962 -10.33736 -9.85471 -9.44970 -8.19458 -6.30005 -0.26608 0.37727 0.78878 1.40326 1.40708 1.54384 1.90939 2.41731 2.74131 3.10329 3.13663 3.23729 3.81204 3.88356 4.06145 4.19790 4.24843 4.33342 4.36228 4.41641 4.57371 4.65511 4.72318 4.74933 4.96598 4.99952 5.10293 5.19898 5.22023 5.24360 5.31495 5.53170 5.76152 5.86874 5.98353 6.27820 6.34225 6.85480 6.86738 7.39000 8.92616 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027753 B = 0.003583 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.664334 B = 7812.035553 C = 8381.941685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.092 4.092 11 C 0.075 3.925 12 N -0.671 5.671 13 C 0.199 3.801 14 H 0.066 0.934 15 C 0.032 3.968 16 N -0.479 5.479 17 C 0.017 3.983 18 C -0.246 4.246 19 S 0.138 5.862 20 C -0.146 4.146 21 C -0.174 4.174 22 C -0.165 4.165 23 H 0.264 0.736 24 H -0.006 1.006 25 H -0.007 1.007 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.027 0.973 30 H 0.343 0.657 31 H 0.194 0.806 32 H 0.209 0.791 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.547 -24.392 2.807 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.130 4.130 11 C -0.054 4.054 12 N -0.303 5.303 13 C 0.086 3.914 14 H 0.084 0.916 15 C -0.246 4.246 16 N -0.194 5.194 17 C -0.133 4.133 18 C -0.385 4.385 19 S 0.391 5.609 20 C -0.166 4.166 21 C -0.211 4.211 22 C -0.202 4.202 23 H 0.072 0.928 24 H 0.012 0.988 25 H 0.011 0.989 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.162 0.838 31 H 0.211 0.789 32 H 0.226 0.774 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.812 -24.155 2.264 24.424 hybrid contribution 0.846 0.898 0.668 1.404 sum 3.659 -23.257 2.933 23.725 Atomic orbital electron populations 1.70096 1.07705 1.27688 1.51786 1.25966 0.95800 1.03289 0.94741 0.85405 0.79015 0.78806 0.77859 1.18800 1.20269 1.20228 1.21721 0.93474 0.92496 1.50387 0.92486 1.18955 0.94339 0.92853 0.94937 1.21363 0.98060 0.92991 1.00558 1.21917 0.93735 0.89620 1.00109 1.60395 1.19442 1.00087 1.50425 1.19599 0.92229 0.85385 0.94225 0.91601 1.27006 0.94464 1.02596 1.00522 1.66205 1.07281 1.20369 1.25546 1.22269 1.02904 0.92276 0.95869 1.27515 0.95038 1.08309 1.07638 1.83910 1.12596 1.25752 1.38605 1.22106 0.95860 1.02767 0.95868 1.23133 0.93559 1.01008 1.03400 1.23027 1.03148 0.90248 1.03815 0.92753 0.98771 0.98859 0.93427 0.93080 0.91250 0.95457 0.83834 0.78884 0.77407 0.88318 0.88408 0.88031 0.87763 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 4 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.80 9.11 25.60 0.23 -31.56 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.45 4.97 29.85 0.15 1.60 16 10 C -0.09 -3.95 5.41 30.60 0.17 -3.78 16 11 C 0.08 2.66 5.48 86.31 0.47 3.13 16 12 N -0.67 -20.90 6.27 -495.45 -3.11 -24.00 16 13 C 0.20 5.15 2.74 44.17 0.12 5.27 16 14 H 0.07 1.62 7.56 -2.39 -0.02 1.60 16 15 C 0.03 0.76 5.55 88.52 0.49 1.25 16 16 N -0.48 -12.33 10.50 -191.45 -2.01 -14.34 16 17 C 0.02 0.33 11.35 83.66 0.95 1.28 16 18 C -0.25 -3.62 11.37 66.77 0.76 -2.86 16 19 S 0.14 2.39 23.18 -56.49 -1.31 1.08 16 20 C -0.15 -3.61 5.22 -10.79 -0.06 -3.66 16 21 C -0.17 -3.69 10.18 30.62 0.31 -3.38 16 22 C -0.16 -3.17 9.87 30.62 0.30 -2.87 16 23 H 0.26 15.16 8.31 -92.71 -0.77 14.38 16 24 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 25 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.07 2.50 8.01 -2.38 -0.02 2.48 16 29 H 0.03 0.94 8.06 -2.39 -0.02 0.92 16 30 H 0.34 10.67 8.35 -89.69 -0.75 9.92 16 31 H 0.19 2.69 8.06 -2.91 -0.02 2.66 16 32 H 0.21 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.10 2.00 8.05 -2.39 -0.02 1.98 16 35 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -67.32 328.14 0.54 -66.77 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.30 Total: 15.61 kcal Atomic # 6 Polarization: -39.52 SS G_CDS: 4.36 Total: -35.16 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -4.83 Total: -95.46 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.31 Total: 1.08 kcal Total: -67.32 0.54 -66.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185415332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.365 kcal (2) G-P(sol) polarization free energy of solvation -67.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds