Wall clock time and date at job start Mon Mar 30 2020 07:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47216 * 2 1 4 4 H 1.09005 * 109.46848 * 54.99962 * 3 2 1 5 5 C 1.50698 * 109.47173 * 174.99875 * 3 2 1 6 6 H 1.07994 * 119.99803 * 119.99585 * 5 3 2 7 7 C 1.37878 * 120.00158 * 300.00568 * 5 3 2 8 8 N 1.31516 * 119.99684 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00169 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47502 * 89.99371 * 9 7 5 11 11 H 1.48500 * 109.47230 * 209.99667 * 9 7 5 12 12 H 1.48504 * 109.47223 * 329.99787 * 9 7 5 13 13 O 1.45198 * 109.47116 * 295.00145 * 3 2 1 14 14 C 1.34714 * 117.00129 * 89.99754 * 13 3 2 15 15 O 1.21467 * 119.99882 * 0.02562 * 14 13 3 16 16 C 1.47735 * 120.00150 * 179.97438 * 14 13 3 17 17 C 1.39617 * 120.13621 * 353.76523 * 16 14 13 18 18 C 1.38155 * 119.81974 * 179.81040 * 17 16 14 19 19 F 1.35101 * 119.95189 * 180.20861 * 18 17 16 20 20 C 1.38604 * 120.09761 * 0.44485 * 18 17 16 21 21 C 1.38305 * 120.27637 * 359.78551 * 20 18 17 22 22 C 1.37968 * 120.17766 * 0.02562 * 21 20 18 23 23 C 1.50710 * 120.04842 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.46964 * 300.00515 * 1 2 3 25 25 H 1.08998 * 109.47633 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46980 * 59.99629 * 1 2 3 27 27 H 1.08994 * 109.47094 * 119.99949 * 2 1 3 28 28 H 1.09000 * 109.46882 * 240.00266 * 2 1 3 29 29 H 0.97005 * 119.99518 * 180.02562 * 8 7 5 30 30 H 1.08007 * 120.08729 * 0.02562 * 17 16 14 31 31 H 1.08001 * 119.85680 * 179.76552 * 20 18 17 32 32 H 1.08002 * 119.90764 * 179.97438 * 21 20 18 33 33 H 1.09002 * 109.46826 * 263.43694 * 23 22 21 34 34 H 1.08993 * 109.47038 * 23.43423 * 23 22 21 35 35 H 1.09003 * 109.46856 * 143.43931 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8799 1.3811 10 1 6.4429 2.1128 2.0836 11 1 6.4390 -0.3112 2.1545 12 1 6.6131 0.8394 0.0270 13 8 1.6559 2.0917 -1.2407 14 6 0.4685 2.7277 -1.2560 15 8 -0.2268 2.7401 -0.2600 16 6 0.0123 3.4112 -2.4838 17 6 0.8623 3.5121 -3.5868 18 6 0.4276 4.1492 -4.7330 19 9 1.2463 4.2446 -5.8035 20 6 -0.8455 4.6949 -4.7847 21 6 -1.6890 4.6014 -3.6927 22 6 -1.2681 3.9643 -2.5436 23 6 -2.1895 3.8647 -1.3552 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8293 -0.0606 2.9502 30 1 1.8556 3.0902 -3.5453 31 1 -1.1799 5.1954 -5.6814 32 1 -2.6797 5.0291 -3.7393 33 1 -1.9640 4.6669 -0.6525 34 1 -3.2233 3.9536 -1.6886 35 1 -2.0473 2.9016 -0.8650 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187902590.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:39 Heat of formation + Delta-G solvation = -117.661803 kcal Electronic energy + Delta-G solvation = -20163.500855 eV Core-core repulsion = 16847.827488 eV Total energy + Delta-G solvation = -3315.673367 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.88634 -40.17545 -38.48943 -35.85913 -33.60299 -32.24266 -31.68774 -31.13633 -27.44027 -26.69854 -24.32495 -23.16866 -21.94826 -20.73612 -19.65351 -17.92316 -16.92970 -16.55383 -15.90370 -15.73687 -15.61205 -15.27483 -15.05511 -14.43351 -13.86920 -13.52486 -13.47970 -13.02954 -12.85086 -12.25357 -11.98575 -11.80283 -11.68370 -11.49974 -11.41738 -11.31982 -11.21275 -10.94700 -10.68792 -10.28269 -9.79870 -9.50309 -9.38559 -9.18702 -8.84222 -8.58164 -8.47696 -6.21046 -4.28103 0.69858 1.10739 2.90785 3.23376 3.28891 3.32234 3.52548 3.75636 4.17659 4.31777 4.61025 4.81703 4.88112 5.11106 5.12453 5.41197 5.64670 5.81379 5.85410 5.91347 5.95450 6.07137 6.19983 6.26288 6.29574 6.40091 6.55626 6.75108 6.86162 6.93003 7.13126 7.21308 7.58693 7.70258 7.89690 8.12192 8.56358 8.84268 9.37189 10.85731 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022731 B = 0.005517 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.526986 B = 5074.179965 C = 5912.622473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.049 0.951 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.349 6.349 14 C 0.496 3.504 15 O -0.502 6.502 16 C -0.090 4.090 17 C -0.093 4.093 18 C 0.075 3.925 19 F -0.139 7.139 20 C -0.125 4.125 21 C -0.110 4.110 22 C -0.034 4.034 23 C -0.123 4.123 24 H 0.054 0.946 25 H 0.033 0.967 26 H 0.031 0.969 27 H 0.109 0.891 28 H 0.042 0.958 29 H 0.266 0.734 30 H 0.154 0.846 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.286 6.362 -10.487 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.266 6.266 14 C 0.340 3.660 15 O -0.393 6.393 16 C -0.091 4.091 17 C -0.112 4.112 18 C 0.056 3.944 19 F -0.118 7.118 20 C -0.144 4.144 21 C -0.128 4.128 22 C -0.034 4.034 23 C -0.179 4.179 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.127 0.873 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.171 0.829 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.388 6.227 -10.021 15.077 hybrid contribution 1.115 -0.044 -0.050 1.117 sum -8.273 6.184 -10.071 14.426 Atomic orbital electron populations 1.21869 0.98375 0.99099 1.00701 1.22027 0.92663 0.99282 1.03437 1.20729 0.95086 0.88768 0.78385 0.93327 1.21033 0.89604 1.39062 1.06319 0.91316 1.24871 0.99243 0.94688 0.95044 1.69889 1.35403 1.37796 1.09436 0.86286 0.83859 0.77713 0.78381 1.20393 1.20922 1.19582 1.86538 1.33370 1.62291 1.44360 1.20769 0.81209 0.76989 0.87019 1.90732 1.54617 1.58929 1.35026 1.19142 0.94635 1.01993 0.93353 1.21554 1.01540 0.97242 0.90864 1.17534 0.89479 1.02632 0.84747 1.91507 1.71895 1.94622 1.53735 1.21306 0.92560 1.00323 1.00215 1.20832 1.00145 0.99942 0.91845 1.20152 0.93212 0.93813 0.96271 1.21134 0.96063 1.05767 0.94923 0.92723 0.94766 0.94986 0.87254 0.93938 0.92359 0.82870 0.84464 0.84376 0.90320 0.92304 0.88223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.57 37.16 0.32 -2.74 16 2 C -0.14 -3.32 5.49 -26.73 -0.15 -3.47 16 3 C 0.22 5.80 2.25 -27.88 -0.06 5.73 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 5 C -0.52 -14.41 8.90 -34.44 -0.31 -14.72 16 6 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -24.70 11.29 55.43 0.63 -24.08 16 9 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 O -0.35 -8.15 9.08 -40.53 -0.37 -8.52 16 14 C 0.50 10.20 6.28 34.61 0.22 10.42 16 15 O -0.50 -10.85 10.52 -19.24 -0.20 -11.06 16 16 C -0.09 -1.49 5.87 -104.99 -0.62 -2.11 16 17 C -0.09 -1.43 9.59 -39.10 -0.38 -1.80 16 18 C 0.08 1.00 7.29 -39.48 -0.29 0.72 16 19 F -0.14 -1.89 17.26 2.25 0.04 -1.85 16 20 C -0.13 -1.36 10.02 -39.42 -0.39 -1.76 16 21 C -0.11 -1.19 9.66 -39.66 -0.38 -1.57 16 22 C -0.03 -0.47 5.91 -104.21 -0.62 -1.09 16 23 C -0.12 -1.61 8.73 36.01 0.31 -1.29 16 24 H 0.05 1.21 7.79 -51.93 -0.40 0.80 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.03 0.66 6.06 -51.93 -0.31 0.34 16 27 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 28 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 30 H 0.15 2.41 7.63 -52.48 -0.40 2.01 16 31 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.59 8.04 -51.93 -0.42 0.17 16 35 H 0.10 1.56 5.84 -51.93 -0.30 1.25 16 LS Contribution 298.00 15.07 4.49 4.49 Total: -1.00 -28.75 298.00 -7.05 -35.80 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -4.18 Total: 1.41 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -2.43 Total: -12.04 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.63 Total: -24.08 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.57 Total: -19.58 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.75 -7.05 -35.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187902590.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.861 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds