Wall clock time and date at job start Mon Mar 30 2020 07:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34233 * 117.00487 * 270.00398 * 13 3 2 15 15 O 1.20827 * 119.99435 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00238 * 180.02562 * 14 13 3 17 17 C 1.50695 * 109.47103 * 180.02562 * 16 14 13 18 18 C 1.38265 * 119.98505 * 269.72197 * 17 16 14 19 19 C 1.38229 * 120.05099 * 179.72563 * 18 17 16 20 20 C 1.38210 * 120.02326 * 0.54847 * 19 18 17 21 21 C 1.38441 * 119.97551 * 359.72655 * 20 19 18 22 22 F 1.35103 * 120.02346 * 180.02562 * 21 20 19 23 23 C 1.38176 * 119.98786 * 89.99799 * 17 16 14 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.46571 * 299.99629 * 16 14 13 31 31 H 1.09002 * 109.47135 * 59.99355 * 16 14 13 32 32 H 1.08004 * 119.97765 * 359.97438 * 18 17 16 33 33 H 1.07999 * 119.98480 * 180.27950 * 19 18 17 34 34 H 1.08000 * 120.01451 * 179.74884 * 20 19 18 35 35 H 1.07994 * 120.01717 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 8 1.6559 2.0916 1.2407 14 6 0.4727 2.7254 1.2561 15 8 -0.2189 2.7377 0.2653 16 6 0.0074 3.4225 2.5085 17 6 -1.3408 4.0494 2.2632 18 6 -1.4242 5.3472 1.7936 19 6 -2.6601 5.9217 1.5626 20 6 -3.8141 5.2031 1.8118 21 6 -3.7319 3.9055 2.2874 22 9 -4.8593 3.2020 2.5307 23 6 -2.4931 3.3291 2.5130 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8292 -0.0609 -2.9500 30 1 -0.0712 2.6983 3.3195 31 1 0.7245 4.1968 2.7811 32 1 -0.5230 5.9112 1.6032 33 1 -2.7239 6.9339 1.1915 34 1 -4.7797 5.6535 1.6351 35 1 -2.4278 2.3168 2.8836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187914131.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:20 Heat of formation + Delta-G solvation = -137.533898 kcal Electronic energy + Delta-G solvation = -19826.778816 eV Core-core repulsion = 16510.243730 eV Total energy + Delta-G solvation = -3316.535086 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.90867 -41.47679 -39.90756 -37.57898 -35.48341 -33.98049 -33.27705 -31.52398 -29.66044 -28.68742 -25.28857 -23.78112 -23.52687 -22.17158 -21.15802 -18.91317 -18.52675 -18.16462 -17.59444 -17.12703 -17.10030 -16.85078 -16.58783 -16.20775 -15.06241 -14.94719 -14.75617 -14.47943 -14.18617 -13.97152 -13.38636 -13.33137 -13.17573 -13.04909 -12.94103 -12.78226 -12.57399 -12.54069 -12.14753 -12.02961 -11.75809 -11.44229 -11.23408 -10.80855 -10.51178 -9.96124 -9.66248 -8.26029 -6.43093 0.12754 0.23396 1.42212 1.44177 1.46391 1.54434 2.06721 2.41510 2.75914 3.03771 3.21266 3.56733 3.80565 4.05932 4.12606 4.23865 4.30525 4.36765 4.39448 4.46884 4.57287 4.59452 4.82908 4.90414 5.07257 5.09281 5.13495 5.21625 5.33317 5.40105 5.48461 5.53046 5.68426 5.92805 6.00759 6.17711 6.62689 7.04964 7.29465 8.80372 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035218 B = 0.004302 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.861886 B = 6506.897549 C = 6883.942340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.006 0.994 5 C -0.551 4.551 6 H 0.067 0.933 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.980 3.020 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.268 1.268 13 O -0.364 6.364 14 C 0.446 3.554 15 O -0.540 6.540 16 C -0.069 4.069 17 C -0.054 4.054 18 C -0.121 4.121 19 C -0.088 4.088 20 C -0.154 4.154 21 C 0.075 3.925 22 F -0.149 7.149 23 C -0.152 4.152 24 H 0.039 0.961 25 H 0.059 0.941 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.270 0.730 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.165 0.835 34 H 0.156 0.844 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.747 9.114 10.250 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C 0.173 3.827 4 H 0.023 0.977 5 C -0.588 4.588 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.803 3.197 10 H -0.189 1.189 11 H -0.204 1.204 12 H -0.193 1.193 13 O -0.281 6.281 14 C 0.290 3.710 15 O -0.431 6.431 16 C -0.106 4.106 17 C -0.054 4.054 18 C -0.139 4.139 19 C -0.105 4.105 20 C -0.172 4.172 21 C 0.056 3.944 22 F -0.128 7.128 23 C -0.170 4.170 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.153 0.847 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.183 0.817 34 H 0.174 0.826 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.955 8.962 9.767 16.578 hybrid contribution 0.461 -0.547 -0.584 0.924 sum -9.494 8.415 9.183 15.661 Atomic orbital electron populations 1.21698 0.96359 1.00426 1.00070 1.21867 0.94344 0.98318 1.02288 1.20314 0.94431 0.89164 0.78777 0.97656 1.21330 0.90623 1.39977 1.06885 0.91444 1.25796 1.04161 0.93886 0.94376 1.70010 1.37514 1.37949 1.09867 0.85280 0.77791 0.78812 0.77819 1.18880 1.20420 1.19285 1.86456 1.36143 1.63142 1.42374 1.24212 0.79465 0.76371 0.90946 1.90626 1.55796 1.59090 1.37538 1.20448 0.94935 1.01949 0.93297 1.19258 0.92975 0.94553 0.98606 1.21450 0.99645 0.94627 0.98205 1.21344 0.90613 1.01268 0.97322 1.21460 1.01658 0.92637 1.01468 1.17880 0.81823 0.91783 1.02884 1.91466 1.50005 1.78936 1.92404 1.21128 0.91169 1.01158 1.03593 0.94231 0.92242 0.94846 0.93505 0.89749 0.92103 0.84663 0.83982 0.83760 0.81738 0.82596 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.57 71.98 0.62 -5.05 16 2 C -0.13 -6.55 5.49 30.59 0.17 -6.38 16 3 C 0.23 12.20 2.25 29.85 0.07 12.27 16 4 H 0.01 0.34 7.16 -2.39 -0.02 0.33 16 5 C -0.55 -30.90 8.90 25.60 0.23 -30.67 16 6 H 0.07 3.68 7.81 -2.91 -0.02 3.66 16 7 C 0.02 0.96 5.29 84.66 0.45 1.41 16 8 N -0.92 -52.35 11.29 21.45 0.24 -52.11 16 9 Si 0.98 42.44 29.54 68.60 2.03 44.47 16 10 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 13 O -0.36 -16.85 9.81 -51.44 -0.50 -17.35 16 14 C 0.45 17.51 6.41 71.24 0.46 17.96 16 15 O -0.54 -24.68 13.18 21.96 0.29 -24.39 16 16 C -0.07 -1.78 5.94 29.10 0.17 -1.60 16 17 C -0.05 -1.37 4.37 -19.87 -0.09 -1.46 16 18 C -0.12 -2.70 9.70 22.27 0.22 -2.48 16 19 C -0.09 -1.66 10.04 22.26 0.22 -1.43 16 20 C -0.15 -3.16 10.03 22.31 0.22 -2.94 16 21 C 0.08 1.91 7.30 22.38 0.16 2.07 16 22 F -0.15 -3.97 17.27 44.97 0.78 -3.19 16 23 C -0.15 -3.98 9.68 22.31 0.22 -3.76 16 24 H 0.04 1.65 6.06 -2.39 -0.01 1.63 16 25 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.03 1.57 7.80 -2.38 -0.02 1.56 16 27 H 0.05 2.25 8.14 -2.39 -0.02 2.24 16 28 H 0.08 4.67 5.95 -2.39 -0.01 4.65 16 29 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.14 2.79 8.08 -2.38 -0.02 2.77 16 31 H 0.14 2.82 8.08 -2.39 -0.02 2.80 16 32 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 35 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -67.60 304.14 7.03 -60.57 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 1.09 Total: 14.07 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 3.11 Total: -22.06 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.24 Total: -52.11 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.22 Total: -41.74 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.78 Total: -3.19 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -67.60 7.03 -60.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187914131.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.965 kcal (2) G-P(sol) polarization free energy of solvation -67.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds