Wall clock time and date at job start Mon Mar 30 2020 07:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47147 * 90.00197 * 9 7 5 11 11 H 1.48499 * 109.46797 * 209.99607 * 9 7 5 12 12 H 1.48500 * 109.47032 * 329.99738 * 9 7 5 13 13 O 1.45198 * 109.46884 * 294.99515 * 3 2 1 14 14 C 1.34232 * 116.99973 * 90.00459 * 13 3 2 15 15 O 1.20828 * 120.00187 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00321 * 180.02562 * 14 13 3 17 17 C 1.50698 * 109.47350 * 179.97438 * 16 14 13 18 18 C 1.38214 * 120.01580 * 99.99925 * 17 16 14 19 19 C 1.38221 * 120.02819 * 179.97438 * 18 17 16 20 20 C 1.38268 * 120.05104 * 0.02562 * 19 18 17 21 21 C 1.38176 * 120.02542 * 0.02562 * 20 19 18 22 22 C 1.38443 * 120.01116 * 279.72046 * 17 16 14 23 23 F 1.35103 * 120.02352 * 0.02562 * 22 17 16 24 24 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 25 25 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 26 26 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 28 28 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 29 29 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.47040 * 299.99732 * 16 14 13 31 31 H 1.09005 * 109.47258 * 59.99528 * 16 14 13 32 32 H 1.08002 * 119.99022 * 359.97438 * 18 17 16 33 33 H 1.08002 * 119.97794 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.99034 * 179.97438 * 20 19 18 35 35 H 1.07999 * 120.01154 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3107 2.1547 12 1 6.6131 0.8396 0.0270 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2561 15 8 -0.2193 2.7370 -0.2657 16 6 0.0069 3.4214 -2.5089 17 6 -1.3412 4.0486 -2.2634 18 6 -1.4355 5.4002 -1.9903 19 6 -2.6719 5.9759 -1.7657 20 6 -3.8157 5.2004 -1.8134 21 6 -3.7238 3.8488 -2.0852 22 6 -2.4862 3.2723 -2.3172 23 9 -2.3956 1.9520 -2.5891 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0608 2.9500 30 1 0.7239 4.1957 -2.7823 31 1 -0.0720 2.6967 -3.3193 32 1 -0.5428 6.0069 -1.9524 33 1 -2.7447 7.0320 -1.5519 34 1 -4.7812 5.6511 -1.6373 35 1 -4.6173 3.2432 -2.1220 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187999381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:23 Heat of formation + Delta-G solvation = -120.168547 kcal Electronic energy + Delta-G solvation = -20189.051290 eV Core-core repulsion = 16873.269222 eV Total energy + Delta-G solvation = -3315.782068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.79613 -39.82115 -38.76196 -35.80174 -33.49954 -32.90150 -31.30574 -30.55860 -28.11362 -26.96980 -23.33201 -22.82141 -22.21980 -20.55454 -19.38037 -17.56773 -17.02220 -16.67611 -16.47138 -15.78718 -15.53727 -15.24071 -14.99475 -14.40110 -14.18342 -13.34963 -13.32238 -12.98132 -12.78504 -12.51490 -12.23844 -11.86504 -11.52573 -11.39885 -11.27776 -11.12595 -11.06268 -10.91350 -10.63397 -10.26628 -9.76354 -9.62067 -9.33779 -8.99144 -8.77642 -8.64602 -8.43821 -6.17068 -4.24238 1.10960 1.18406 3.04884 3.24955 3.30284 3.33840 3.43213 3.90688 4.29427 4.35758 4.55494 4.69513 4.87808 5.12809 5.14882 5.26704 5.48390 5.56495 5.70677 5.90777 6.02357 6.10555 6.27007 6.28505 6.34021 6.35544 6.51392 6.85437 6.91829 7.01904 7.21123 7.30020 7.63725 7.76606 7.98172 8.18322 8.66386 8.91559 9.40968 10.89681 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.033989 B = 0.004767 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.595343 B = 5872.376508 C = 6242.851291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.047 0.953 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.356 6.356 14 C 0.454 3.546 15 O -0.510 6.510 16 C -0.081 4.081 17 C -0.100 4.100 18 C -0.079 4.079 19 C -0.132 4.132 20 C -0.094 4.094 21 C -0.156 4.156 22 C 0.118 3.882 23 F -0.135 7.135 24 H 0.051 0.949 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.041 0.959 28 H 0.108 0.892 29 H 0.266 0.734 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.261 8.550 -9.319 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.064 0.936 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.272 6.272 14 C 0.296 3.704 15 O -0.399 6.399 16 C -0.118 4.118 17 C -0.101 4.101 18 C -0.097 4.097 19 C -0.150 4.150 20 C -0.112 4.112 21 C -0.175 4.175 22 C 0.099 3.901 23 F -0.113 7.113 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.126 0.874 29 H 0.076 0.924 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.398 8.359 -8.824 16.663 hybrid contribution 0.858 -0.388 0.283 0.983 sum -10.541 7.971 -8.541 15.735 Atomic orbital electron populations 1.21852 0.98280 0.98972 1.00829 1.22012 0.92681 0.99346 1.03290 1.20671 0.94946 0.88794 0.78651 0.93565 1.21050 0.89708 1.38968 1.06224 0.91347 1.24889 0.99214 0.94761 0.95079 1.69901 1.35366 1.37838 1.09452 0.86288 0.83922 0.77679 0.78337 1.20425 1.20951 1.19586 1.86463 1.34123 1.62469 1.44187 1.22966 0.81031 0.77209 0.89207 1.90625 1.55343 1.58183 1.35745 1.20231 0.93972 1.01235 0.96394 1.19445 0.93175 0.94369 1.03093 1.20949 0.98415 0.93226 0.97104 1.21140 0.92262 1.00325 1.01317 1.20975 0.98964 0.92824 0.98424 1.21097 0.96276 0.96334 1.03765 1.17538 0.94125 0.77825 1.00644 1.91509 1.97060 1.31860 1.90912 0.92955 0.94771 0.94893 0.94001 0.87394 0.92409 0.86811 0.87198 0.84926 0.85359 0.85219 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.57 37.16 0.32 -2.95 16 2 C -0.14 -3.45 5.49 -26.73 -0.15 -3.60 16 3 C 0.22 5.99 2.25 -27.88 -0.06 5.93 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.71 8.90 -34.44 -0.31 -15.01 16 6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.30 11.30 55.43 0.63 -24.68 16 9 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 O -0.36 -8.55 9.81 -39.26 -0.39 -8.94 16 14 C 0.45 9.54 6.40 36.00 0.23 9.77 16 15 O -0.51 -12.03 13.10 -18.75 -0.25 -12.27 16 16 C -0.08 -1.23 5.67 -29.04 -0.16 -1.39 16 17 C -0.10 -1.45 4.43 -104.56 -0.46 -1.91 16 18 C -0.08 -0.96 9.67 -39.60 -0.38 -1.34 16 19 C -0.13 -1.37 10.04 -39.58 -0.40 -1.77 16 20 C -0.09 -0.96 10.04 -39.59 -0.40 -1.36 16 21 C -0.16 -1.89 10.03 -39.51 -0.40 -2.29 16 22 C 0.12 1.76 7.14 -39.42 -0.28 1.47 16 23 F -0.13 -2.22 16.66 2.25 0.04 -2.19 16 24 H 0.05 1.26 7.80 -51.93 -0.40 0.85 16 25 H 0.03 0.76 6.06 -51.93 -0.31 0.45 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.11 2.97 5.95 -51.93 -0.31 2.66 16 29 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.11 1.40 8.01 -51.93 -0.42 0.98 16 31 H 0.11 1.51 7.94 -51.93 -0.41 1.10 16 32 H 0.13 1.34 8.04 -52.49 -0.42 0.92 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 303.15 15.07 4.57 4.57 Total: -1.00 -31.67 303.15 -7.27 -38.94 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.31 Total: 1.29 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -2.54 Total: -12.81 kcal Atomic # 7 Polarization: -25.30 SS G_CDS: 0.63 Total: -24.68 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.63 Total: -21.21 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.67 -7.27 -38.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187999381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.229 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds