Wall clock time and date at job start Mon Mar 30 2020 07:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.47005 * 2 1 4 4 H 1.08997 * 109.46794 * 55.00316 * 3 2 1 5 5 C 1.50697 * 109.46947 * 175.00120 * 3 2 1 6 6 H 1.08001 * 120.00125 * 119.99947 * 5 3 2 7 7 C 1.37886 * 119.99908 * 300.00378 * 5 3 2 8 8 N 1.31513 * 119.99676 * 179.97438 * 7 5 3 9 9 Si 1.86792 * 119.99960 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47445 * 90.00159 * 9 7 5 11 11 H 1.48500 * 109.47174 * 210.00163 * 9 7 5 12 12 H 1.48501 * 109.47243 * 330.00140 * 9 7 5 13 13 O 1.45196 * 109.47338 * 295.00097 * 3 2 1 14 14 C 1.34715 * 116.99791 * 90.00221 * 13 3 2 15 15 O 1.21462 * 119.99987 * 359.97438 * 14 13 3 16 16 C 1.47732 * 119.99883 * 179.97438 * 14 13 3 17 17 C 1.39641 * 120.13706 * 179.97438 * 16 14 13 18 18 C 1.37937 * 119.89678 * 180.02562 * 17 16 14 19 19 C 1.50702 * 119.90556 * 179.97438 * 18 17 16 20 20 C 1.38344 * 120.18011 * 0.02562 * 18 17 16 21 21 C 1.38553 * 120.27948 * 0.02562 * 20 18 17 22 22 F 1.35102 * 119.95169 * 179.97438 * 21 20 18 23 23 C 1.38201 * 120.09999 * 359.67976 * 21 20 18 24 24 H 1.09003 * 109.46665 * 59.99514 * 1 2 3 25 25 H 1.08994 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46886 * 299.99990 * 1 2 3 27 27 H 1.09004 * 109.46842 * 240.00395 * 2 1 3 28 28 H 1.08994 * 109.46911 * 120.00633 * 2 1 3 29 29 H 0.97004 * 119.99650 * 179.97438 * 8 7 5 30 30 H 1.07994 * 120.05283 * 0.03070 * 17 16 14 31 31 H 1.09002 * 109.47093 * 90.00844 * 19 18 17 32 32 H 1.09000 * 109.47045 * 210.00148 * 19 18 17 33 33 H 1.09003 * 109.47589 * 330.00420 * 19 18 17 34 34 H 1.08003 * 119.85900 * 179.97438 * 20 18 17 35 35 H 1.08002 * 120.09252 * 180.29966 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8782 1.2280 8 7 5.4541 0.8794 1.3357 9 14 3.0964 0.1099 2.5706 10 1 2.8745 -1.3262 2.2645 11 1 3.7942 0.2357 3.8754 12 1 1.7882 0.8092 2.6394 13 8 1.6559 2.0917 -1.2406 14 6 0.4685 2.7278 -1.2559 15 8 -0.2271 2.7393 -0.2602 16 6 0.0124 3.4112 -2.4836 17 6 -1.2182 4.0710 -2.5027 18 6 -1.6394 4.7071 -3.6519 19 6 -2.9677 5.4187 -3.6730 20 6 -0.8464 4.6927 -4.7854 21 6 0.3754 4.0394 -4.7749 22 9 1.1443 4.0291 -5.8858 23 6 0.8115 3.4035 -3.6280 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 5.8771 0.4815 2.1127 30 1 -1.8391 4.0833 -1.6192 31 1 -2.8292 6.4558 -3.3673 32 1 -3.3797 5.3892 -4.6817 33 1 -3.6550 4.9258 -2.9853 34 1 -1.1815 5.1921 -5.6825 35 1 1.7661 2.8985 -3.6185 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188039769.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:13 Heat of formation + Delta-G solvation = -113.729208 kcal Electronic energy + Delta-G solvation = -19940.725847 eV Core-core repulsion = 16625.223010 eV Total energy + Delta-G solvation = -3315.502837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.96190 -40.21726 -38.78255 -36.05830 -33.77395 -32.94535 -31.93589 -30.85001 -27.93786 -27.23876 -24.70178 -22.77695 -22.00494 -21.16284 -19.78359 -17.88831 -16.98541 -16.74066 -16.28681 -16.09749 -15.79473 -15.62154 -15.39634 -14.51354 -13.83946 -13.64040 -13.50296 -13.46606 -12.94256 -12.61077 -12.35573 -12.06034 -12.04165 -11.79153 -11.67652 -11.57993 -11.45696 -11.26300 -10.78360 -10.14767 -10.00914 -9.66830 -9.57369 -9.13338 -9.11261 -8.81313 -8.68550 -6.25710 -4.28507 0.58807 1.02082 2.73813 3.16254 3.26974 3.29077 3.31664 3.65643 4.04993 4.23623 4.47030 4.69702 4.96030 4.99452 5.03606 5.15220 5.27489 5.34865 5.52401 5.69348 5.77759 5.85217 5.89132 5.90291 5.95195 6.13548 6.23995 6.39791 6.53258 6.62942 6.67384 6.69187 6.99666 7.29226 7.45921 8.15467 8.50521 8.81124 9.30805 10.86233 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027665 B = 0.005137 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.849774 B = 5448.864366 C = 6053.143844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.149 4.149 3 C 0.198 3.802 4 H 0.048 0.952 5 C -0.527 4.527 6 H 0.088 0.912 7 C 0.081 3.919 8 N -0.887 5.887 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.260 1.260 13 O -0.333 6.333 14 C 0.497 3.503 15 O -0.508 6.508 16 C -0.080 4.080 17 C -0.072 4.072 18 C -0.073 4.073 19 C -0.113 4.113 20 C -0.130 4.130 21 C 0.090 3.910 22 F -0.136 7.136 23 C -0.102 4.102 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.270 0.730 30 H 0.144 0.856 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.138 0.862 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.933 6.208 -10.321 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.186 4.186 3 C 0.144 3.856 4 H 0.066 0.934 5 C -0.564 4.564 6 H 0.106 0.894 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.705 3.295 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.185 1.185 13 O -0.249 6.249 14 C 0.341 3.659 15 O -0.399 6.399 16 C -0.082 4.082 17 C -0.090 4.090 18 C -0.073 4.073 19 C -0.169 4.169 20 C -0.149 4.149 21 C 0.071 3.929 22 F -0.115 7.115 23 C -0.121 4.121 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.161 0.839 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.156 0.844 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.887 6.125 -9.929 18.914 hybrid contribution -0.162 -0.594 0.640 0.888 sum -15.049 5.531 -9.288 18.529 Atomic orbital electron populations 1.21906 0.96961 1.00108 1.01775 1.22375 0.94392 0.99511 1.02343 1.21034 0.96441 0.88109 0.80002 0.93403 1.20782 0.87598 1.40080 1.07988 0.89428 1.24725 0.94948 0.95220 0.97348 1.69836 1.08496 1.44198 1.29803 0.87002 0.81014 0.80153 0.81301 1.19879 1.21627 1.18478 1.86558 1.33499 1.62168 1.42658 1.20878 0.80965 0.76853 0.87161 1.90779 1.55539 1.58614 1.34944 1.19174 0.95644 1.00886 0.92469 1.21235 0.94625 0.94689 0.98468 1.19641 0.97056 0.98291 0.92362 1.20803 0.92705 1.00234 1.03175 1.21201 0.93406 1.00512 0.99811 1.17513 0.90661 1.01207 0.83491 1.91523 1.74532 1.94978 1.50435 1.21586 1.01357 0.98412 0.90784 0.93607 0.93844 0.92484 0.91129 0.91678 0.92009 0.83861 0.90587 0.91136 0.90855 0.84384 0.82681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.56 37.16 0.32 -2.61 16 2 C -0.15 -3.33 5.15 -26.73 -0.14 -3.47 16 3 C 0.20 4.90 1.84 -27.89 -0.05 4.85 16 4 H 0.05 1.25 6.22 -51.93 -0.32 0.93 16 5 C -0.53 -14.93 9.48 -34.44 -0.33 -15.26 16 6 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 7 C 0.08 2.31 5.45 -17.82 -0.10 2.21 16 8 N -0.89 -26.49 13.96 55.43 0.77 -25.71 16 9 Si 0.88 21.39 24.41 -169.99 -4.15 17.24 16 10 H -0.27 -6.37 6.83 56.52 0.39 -5.98 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.26 -6.22 6.53 56.52 0.37 -5.85 16 13 O -0.33 -7.50 9.06 -40.53 -0.37 -7.86 16 14 C 0.50 9.84 6.35 34.61 0.22 10.06 16 15 O -0.51 -10.77 13.53 -19.24 -0.26 -11.03 16 16 C -0.08 -1.27 5.87 -104.99 -0.62 -1.88 16 17 C -0.07 -0.93 9.24 -39.17 -0.36 -1.29 16 18 C -0.07 -0.76 5.87 -104.69 -0.61 -1.37 16 19 C -0.11 -0.78 10.01 36.01 0.36 -0.42 16 20 C -0.13 -1.37 9.67 -39.43 -0.38 -1.75 16 21 C 0.09 1.16 7.29 -39.48 -0.29 0.87 16 22 F -0.14 -1.79 17.26 2.25 0.04 -1.75 16 23 C -0.10 -1.50 9.60 -39.09 -0.38 -1.88 16 24 H 0.04 0.87 6.06 -51.93 -0.31 0.55 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.14 7.79 -51.93 -0.40 0.74 16 27 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.07 1.51 3.22 -51.93 -0.17 1.34 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.14 1.77 7.65 -52.49 -0.40 1.36 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 34 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 35 H 0.16 2.35 7.61 -52.49 -0.40 1.95 16 LS Contribution 296.62 15.07 4.47 4.47 Total: -1.00 -30.62 296.62 -5.99 -36.61 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -4.15 Total: -0.01 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -2.35 Total: -11.94 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.77 Total: -25.71 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.63 Total: -18.90 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.15 Total: 17.24 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.62 -5.99 -36.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188039769.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.122 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds