Wall clock time and date at job start Mon Mar 30 2020 07:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47032 * 2 1 4 4 H 1.09004 * 109.47509 * 305.52767 * 3 2 1 5 5 C 1.50700 * 109.47152 * 185.52285 * 3 2 1 6 6 H 1.07999 * 119.99898 * 272.39462 * 5 3 2 7 7 C 1.37874 * 119.99688 * 92.40531 * 5 3 2 8 8 N 1.31513 * 119.99726 * 177.33491 * 7 5 3 9 9 Si 1.86799 * 120.00370 * 357.32796 * 7 5 3 10 10 H 1.48504 * 109.46627 * 84.80318 * 9 7 5 11 11 H 1.48494 * 109.47395 * 204.80544 * 9 7 5 12 12 H 1.48500 * 109.46891 * 324.80762 * 9 7 5 13 13 O 1.45203 * 109.46802 * 65.52252 * 3 2 1 14 14 C 1.34730 * 117.00363 * 269.99665 * 13 3 2 15 15 O 1.21486 * 119.99866 * 0.02562 * 14 13 3 16 16 C 1.47592 * 120.00044 * 179.97438 * 14 13 3 17 17 C 1.39725 * 120.12676 * 353.80778 * 16 14 13 18 18 C 1.37792 * 119.87813 * 179.97438 * 17 16 14 19 19 C 1.38691 * 120.12620 * 359.97438 * 18 17 16 20 20 F 1.35099 * 119.87821 * 180.02562 * 19 18 17 21 21 C 1.38648 * 120.24517 * 359.97438 * 19 18 17 22 22 C 1.37838 * 120.12356 * 359.78891 * 21 19 18 23 23 C 1.50709 * 120.06262 * 180.25147 * 22 21 19 24 24 H 1.09000 * 109.47071 * 299.99530 * 1 2 3 25 25 H 1.09004 * 109.47137 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47401 * 60.00085 * 1 2 3 27 27 H 1.08997 * 109.47401 * 119.99915 * 2 1 3 28 28 H 1.09000 * 109.47071 * 240.00470 * 2 1 3 29 29 H 0.97008 * 120.00066 * 179.97438 * 8 7 5 30 30 H 1.08000 * 120.06064 * 359.97438 * 17 16 14 31 31 H 1.08002 * 119.93983 * 180.02562 * 18 17 16 32 32 H 1.08004 * 119.93781 * 180.02562 * 21 19 18 33 33 H 1.09005 * 109.47037 * 263.96320 * 23 22 21 34 34 H 1.09001 * 109.46807 * 23.96614 * 23 22 21 35 35 H 1.08997 * 109.46938 * 143.96402 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5981 1.9842 -0.8364 5 6 3.5407 1.4447 -0.1367 6 1 4.1632 1.3765 0.7432 7 6 4.1190 1.5341 -1.3852 8 7 5.4279 1.5889 -1.5011 9 14 3.0435 1.5772 -2.9119 10 1 2.6033 2.9721 -3.1679 11 1 3.8183 1.0807 -4.0773 12 1 1.8539 0.7130 -2.7038 13 8 1.6665 2.0878 1.2460 14 6 0.4791 2.7239 1.2735 15 8 -0.2252 2.7386 0.2837 16 6 0.0335 3.4019 2.5064 17 6 0.7771 3.2778 3.6829 18 6 0.3567 3.9134 4.8309 19 6 -0.8019 4.6757 4.8201 20 9 -1.2093 5.2971 5.9484 21 6 -1.5431 4.8032 3.6553 22 6 -1.1294 4.1758 2.4999 23 6 -1.9330 4.3199 1.2331 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 5.8348 1.6514 -2.3795 30 1 1.6797 2.6848 3.6924 31 1 0.9309 3.8185 5.7407 32 1 -2.4444 5.3984 3.6524 33 1 -2.6024 3.4660 1.1284 34 1 -2.5192 5.2379 1.2772 35 1 -1.2588 4.3601 0.3777 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188063783.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:51 Heat of formation + Delta-G solvation = -133.046292 kcal Electronic energy + Delta-G solvation = -20157.572739 eV Core-core repulsion = 16841.232251 eV Total energy + Delta-G solvation = -3316.340488 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.04432 -41.69428 -39.82311 -37.61861 -35.38645 -33.97618 -33.70040 -32.01610 -29.77949 -28.31373 -25.41953 -24.60888 -23.34721 -22.21927 -21.41972 -19.57832 -18.58281 -18.27314 -17.90470 -17.46524 -16.98145 -16.68289 -16.41916 -15.48146 -15.12941 -14.85613 -14.65688 -14.56716 -14.29419 -14.10441 -13.85022 -13.81218 -13.46539 -13.21683 -12.93523 -12.89604 -12.81658 -12.58725 -12.10420 -11.94078 -11.75679 -11.39631 -11.22508 -10.96658 -10.71442 -10.05649 -9.84848 -8.45959 -6.55303 -0.49408 0.13203 1.26516 1.30048 1.40620 1.49415 1.91150 2.21197 2.54064 2.91450 3.04310 3.59527 3.67398 3.81946 4.04165 4.17271 4.19375 4.26160 4.37924 4.58486 4.59047 4.68375 4.79115 4.83410 4.97997 5.02116 5.05405 5.09541 5.11588 5.19600 5.34412 5.41141 5.48751 5.66222 5.76686 6.17986 6.53039 6.91811 7.13039 8.69323 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028017 B = 0.005265 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.168459 B = 5316.470952 C = 5634.974436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.133 4.133 3 C 0.196 3.804 4 H 0.036 0.964 5 C -0.533 4.533 6 H 0.047 0.953 7 C 0.035 3.965 8 N -0.925 5.925 9 Si 0.925 3.075 10 H -0.271 1.271 11 H -0.270 1.270 12 H -0.240 1.240 13 O -0.355 6.355 14 C 0.492 3.508 15 O -0.524 6.524 16 C -0.158 4.158 17 C -0.033 4.033 18 C -0.167 4.167 19 C 0.133 3.867 20 F -0.132 7.132 21 C -0.163 4.163 22 C 0.003 3.997 23 C -0.122 4.122 24 H 0.041 0.959 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.275 0.725 30 H 0.147 0.853 31 H 0.167 0.833 32 H 0.171 0.829 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.463 4.635 9.830 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C 0.142 3.858 4 H 0.054 0.946 5 C -0.570 4.570 6 H 0.065 0.935 7 C -0.166 4.166 8 N -0.563 5.563 9 Si 0.748 3.252 10 H -0.197 1.197 11 H -0.195 1.195 12 H -0.164 1.164 13 O -0.271 6.271 14 C 0.339 3.661 15 O -0.417 6.417 16 C -0.159 4.159 17 C -0.051 4.051 18 C -0.186 4.186 19 C 0.114 3.886 20 F -0.111 7.111 21 C -0.181 4.181 22 C 0.002 3.998 23 C -0.178 4.178 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.165 0.835 31 H 0.185 0.815 32 H 0.189 0.811 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.481 4.635 9.439 18.714 hybrid contribution 0.304 0.056 -0.689 0.755 sum -15.177 4.690 8.750 18.136 Atomic orbital electron populations 1.21815 0.95128 1.01673 1.01096 1.22072 0.95686 0.96869 1.02447 1.20729 0.93831 0.90318 0.80878 0.94578 1.20946 0.89691 1.52158 0.94215 0.93510 1.25638 0.96148 0.93074 1.01746 1.69973 1.11145 1.49427 1.25759 0.86085 0.80127 0.79908 0.79100 1.19673 1.19485 1.16365 1.86633 1.35434 1.63077 1.41963 1.21521 0.79820 0.76349 0.88429 1.90707 1.55079 1.58792 1.37086 1.19292 0.99414 1.04888 0.92355 1.21443 0.98072 0.95193 0.90432 1.21306 0.97115 0.99653 1.00504 1.18048 0.94351 0.93627 0.82578 1.91528 1.90031 1.80225 1.49273 1.21152 1.02781 1.04032 0.90145 1.20007 0.91877 0.91269 0.96636 1.21123 0.99625 1.03408 0.93599 0.93962 0.91053 0.93470 0.91576 0.91282 0.91560 0.83498 0.81512 0.81127 0.89933 0.89004 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 8.57 71.98 0.62 -4.43 16 2 C -0.13 -5.62 5.37 30.59 0.16 -5.46 16 3 C 0.20 9.59 1.83 29.85 0.05 9.65 16 4 H 0.04 1.84 4.81 -2.39 -0.01 1.83 16 5 C -0.53 -30.53 9.25 25.60 0.24 -30.29 16 6 H 0.05 2.96 8.06 -2.91 -0.02 2.93 16 7 C 0.03 1.98 5.47 84.65 0.46 2.45 16 8 N -0.93 -55.85 13.96 21.45 0.30 -55.55 16 9 Si 0.93 43.28 26.32 68.60 1.81 45.08 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.24 -10.50 6.33 99.48 0.63 -9.87 16 13 O -0.35 -16.04 9.08 -56.40 -0.51 -16.55 16 14 C 0.49 19.31 6.29 70.29 0.44 19.75 16 15 O -0.52 -21.43 10.53 19.88 0.21 -21.23 16 16 C -0.16 -4.91 5.87 -20.10 -0.12 -5.02 16 17 C -0.03 -0.89 9.61 22.52 0.22 -0.67 16 18 C -0.17 -3.52 10.01 22.27 0.22 -3.30 16 19 C 0.13 2.74 7.31 22.48 0.16 2.91 16 20 F -0.13 -2.62 17.26 44.97 0.78 -1.84 16 21 C -0.16 -3.25 9.64 22.27 0.21 -3.04 16 22 C 0.00 0.07 5.91 -19.61 -0.12 -0.05 16 23 C -0.12 -2.89 8.74 71.24 0.62 -2.27 16 24 H 0.04 1.52 6.05 -2.39 -0.01 1.50 16 25 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.05 1.76 7.82 -2.39 -0.02 1.74 16 27 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.07 2.94 7.01 -2.39 -0.02 2.92 16 29 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 30 H 0.15 4.01 7.62 -2.91 -0.02 3.99 16 31 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.09 1.56 8.04 -2.39 -0.02 1.54 16 35 H 0.07 2.20 5.84 -2.39 -0.01 2.19 16 Total: -1.00 -64.91 295.66 6.79 -58.12 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.03 Total: 11.74 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 3.18 Total: -19.78 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.30 Total: -55.55 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -0.30 Total: -37.78 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.78 Total: -1.84 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.81 Total: 45.08 kcal Total: -64.91 6.79 -58.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188063783.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.924 kcal (2) G-P(sol) polarization free energy of solvation -64.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds