Wall clock time and date at job start Mon Mar 30 2020 07:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34228 * 117.00100 * 89.99663 * 13 3 2 15 15 O 1.20817 * 119.99998 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99508 * 179.97438 * 14 13 3 17 17 C 1.50702 * 109.46995 * 179.97438 * 16 14 13 18 18 C 1.38249 * 119.97139 * 269.72974 * 17 16 14 19 19 C 1.38205 * 120.02095 * 179.72536 * 18 17 16 20 20 C 1.38463 * 119.97169 * 0.56344 * 19 18 17 21 21 F 1.35103 * 120.01850 * 179.67919 * 20 19 18 22 22 C 1.38450 * 119.95108 * 359.71110 * 20 19 18 23 23 C 1.38198 * 119.97572 * 359.97438 * 22 20 19 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.47381 * 299.99866 * 16 14 13 31 31 H 1.08995 * 109.47448 * 60.00218 * 16 14 13 32 32 H 1.07992 * 119.99061 * 359.97430 * 18 17 16 33 33 H 1.07996 * 120.01017 * 180.25531 * 19 18 17 34 34 H 1.08008 * 120.01344 * 179.97438 * 22 20 19 35 35 H 1.08000 * 119.98829 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2558 15 8 -0.2192 2.7369 -0.2654 16 6 0.0074 3.4227 -2.5083 17 6 -1.3408 4.0497 -2.2628 18 6 -2.4937 3.3306 -2.5182 19 6 -3.7306 3.9026 -2.2881 20 6 -3.8149 5.2004 -1.8127 21 9 -5.0237 5.7627 -1.5936 22 6 -2.6597 5.9214 -1.5627 23 6 -1.4239 5.3451 -1.7874 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8293 -0.0605 2.9501 30 1 0.7244 4.1970 -2.7808 31 1 -0.0713 2.6987 -3.3193 32 1 -2.4277 2.3203 -2.8938 33 1 -4.6310 3.3394 -2.4838 34 1 -2.7244 6.9339 -1.1922 35 1 -0.5227 5.9075 -1.5928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188119430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:28 Heat of formation + Delta-G solvation = -122.103248 kcal Electronic energy + Delta-G solvation = -19743.357384 eV Core-core repulsion = 16427.491421 eV Total energy + Delta-G solvation = -3315.865962 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.93636 -39.95464 -38.77395 -35.80458 -33.52927 -32.56765 -31.33778 -31.19138 -27.89498 -26.89235 -23.33048 -23.12299 -22.14267 -20.58525 -19.40963 -17.72217 -17.02152 -16.70465 -16.49247 -15.66811 -15.60530 -15.32018 -15.13143 -14.42758 -14.03210 -13.67640 -13.49500 -13.00756 -12.88859 -12.47974 -12.15834 -11.77964 -11.70172 -11.42965 -11.30113 -11.17310 -11.03482 -10.94634 -10.67977 -10.29213 -9.80880 -9.63853 -9.37639 -9.14357 -8.81560 -8.60503 -8.46835 -6.19984 -4.27248 1.05860 1.20087 3.00666 3.23089 3.28416 3.31532 3.39197 3.91824 4.20716 4.33895 4.63100 4.63902 4.82855 5.11861 5.14874 5.20602 5.51853 5.57829 5.71142 5.84801 6.00190 6.05478 6.16549 6.21372 6.27958 6.44643 6.45884 6.82756 6.85701 6.95820 7.15598 7.25569 7.60542 7.72668 7.94707 8.14832 8.63147 8.88313 9.38216 10.86725 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.037102 B = 0.004072 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.489642 B = 6874.071519 C = 7102.627678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.357 6.357 14 C 0.451 3.549 15 O -0.509 6.509 16 C -0.080 4.080 17 C -0.074 4.074 18 C -0.075 4.075 19 C -0.153 4.153 20 C 0.092 3.908 21 F -0.144 7.144 22 C -0.152 4.152 23 C -0.074 4.074 24 H 0.052 0.948 25 H 0.032 0.968 26 H 0.031 0.969 27 H 0.108 0.892 28 H 0.041 0.959 29 H 0.266 0.734 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.968 6.793 -9.787 15.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.273 6.273 14 C 0.293 3.707 15 O -0.398 6.398 16 C -0.118 4.118 17 C -0.074 4.074 18 C -0.093 4.093 19 C -0.171 4.171 20 C 0.073 3.927 21 F -0.123 7.123 22 C -0.171 4.171 23 C -0.092 4.092 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.126 0.874 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.160 6.682 -9.271 15.292 hybrid contribution 0.629 -0.026 0.395 0.743 sum -9.531 6.656 -8.876 14.626 Atomic orbital electron populations 1.21851 0.98360 0.98936 1.00740 1.22017 0.92629 0.99401 1.03342 1.20667 0.94961 0.88750 0.78681 0.93544 1.21050 0.89725 1.39005 1.06256 0.91342 1.24885 0.99226 0.94742 0.95079 1.69891 1.35397 1.37814 1.09435 0.86290 0.83903 0.77703 0.78348 1.20415 1.20950 1.19584 1.86468 1.34199 1.62506 1.44174 1.23061 0.80993 0.77309 0.89336 1.90635 1.55362 1.58110 1.35737 1.20310 0.94372 1.01053 0.96040 1.19444 0.94128 0.94229 0.99613 1.20886 0.90931 0.99491 0.97973 1.21069 0.99207 0.94050 1.02816 1.17714 0.80287 0.92709 1.01951 1.91481 1.42873 1.85239 1.92669 1.21074 0.91404 1.01071 1.03576 1.20902 0.97276 0.94624 0.96425 0.92845 0.94873 0.94972 0.87377 0.93989 0.92385 0.87119 0.87242 0.84998 0.84813 0.84788 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.56 37.16 0.32 -2.74 16 2 C -0.14 -3.33 5.49 -26.73 -0.15 -3.48 16 3 C 0.22 5.79 2.25 -27.88 -0.06 5.72 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.40 8.90 -34.44 -0.31 -14.71 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.86 11.29 55.43 0.63 -24.24 16 9 Si 0.91 20.78 29.54 -169.99 -5.02 15.75 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 O -0.36 -8.14 9.81 -39.25 -0.38 -8.52 16 14 C 0.45 8.78 6.41 36.01 0.23 9.02 16 15 O -0.51 -11.32 13.17 -18.74 -0.25 -11.57 16 16 C -0.08 -1.07 5.94 -29.03 -0.17 -1.24 16 17 C -0.07 -0.97 4.37 -104.62 -0.46 -1.42 16 18 C -0.07 -0.91 9.70 -39.59 -0.38 -1.30 16 19 C -0.15 -1.81 10.03 -39.51 -0.40 -2.20 16 20 C 0.09 1.16 7.30 -39.42 -0.29 0.87 16 21 F -0.14 -1.84 17.27 2.25 0.04 -1.80 16 22 C -0.15 -1.82 10.03 -39.52 -0.40 -2.21 16 23 C -0.07 -0.92 9.70 -39.59 -0.38 -1.30 16 24 H 0.05 1.22 7.80 -51.93 -0.40 0.82 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 27 H 0.11 2.89 5.95 -51.93 -0.31 2.58 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.11 1.23 8.09 -51.93 -0.42 0.81 16 31 H 0.11 1.20 8.08 -51.93 -0.42 0.78 16 32 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 304.13 15.07 4.58 4.58 Total: -1.00 -30.49 304.13 -7.27 -37.75 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.32 Total: 1.41 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -2.54 Total: -13.38 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.63 Total: -24.24 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.63 Total: -20.09 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.49 -7.27 -37.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188119430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.350 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds