Wall clock time and date at job start Mon Mar 30 2020 07:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34228 * 117.00100 * 89.99663 * 13 3 2 15 15 O 1.20817 * 119.99998 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99508 * 179.97438 * 14 13 3 17 17 C 1.50702 * 109.46995 * 179.97438 * 16 14 13 18 18 C 1.38249 * 119.97139 * 269.72974 * 17 16 14 19 19 C 1.38205 * 120.02095 * 179.72536 * 18 17 16 20 20 C 1.38463 * 119.97169 * 0.56344 * 19 18 17 21 21 F 1.35103 * 120.01850 * 179.67919 * 20 19 18 22 22 C 1.38450 * 119.95108 * 359.71110 * 20 19 18 23 23 C 1.38198 * 119.97572 * 359.97438 * 22 20 19 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.47381 * 299.99866 * 16 14 13 31 31 H 1.08995 * 109.47448 * 60.00218 * 16 14 13 32 32 H 1.07992 * 119.99061 * 359.97430 * 18 17 16 33 33 H 1.07996 * 120.01017 * 180.25531 * 19 18 17 34 34 H 1.08008 * 120.01344 * 179.97438 * 22 20 19 35 35 H 1.08000 * 119.98829 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2558 15 8 -0.2192 2.7369 -0.2654 16 6 0.0074 3.4227 -2.5083 17 6 -1.3408 4.0497 -2.2628 18 6 -2.4937 3.3306 -2.5182 19 6 -3.7306 3.9026 -2.2881 20 6 -3.8149 5.2004 -1.8127 21 9 -5.0237 5.7627 -1.5936 22 6 -2.6597 5.9214 -1.5627 23 6 -1.4239 5.3451 -1.7874 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8293 -0.0605 2.9501 30 1 0.7244 4.1970 -2.7808 31 1 -0.0713 2.6987 -3.3193 32 1 -2.4277 2.3203 -2.8938 33 1 -4.6310 3.3394 -2.4838 34 1 -2.7244 6.9339 -1.1922 35 1 -0.5227 5.9075 -1.5928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188119430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:27 Heat of formation + Delta-G solvation = -137.580808 kcal Electronic energy + Delta-G solvation = -19744.028541 eV Core-core repulsion = 16427.491421 eV Total energy + Delta-G solvation = -3316.537120 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.90789 -41.45034 -39.90848 -37.54732 -35.46756 -33.76029 -33.19511 -32.09915 -29.52270 -28.36772 -25.24186 -24.03797 -23.43412 -22.11418 -21.11202 -18.88506 -18.62753 -18.45676 -17.58815 -17.14358 -16.88996 -16.58787 -16.56010 -16.03910 -15.06804 -14.83439 -14.74884 -14.54939 -14.42567 -13.95728 -13.37016 -13.33362 -13.18515 -13.05361 -12.86401 -12.75689 -12.66581 -12.52819 -12.11992 -11.93485 -11.72810 -11.42218 -11.20218 -10.78229 -10.50778 -10.05295 -9.59172 -8.25874 -6.42584 0.07891 0.29084 1.42864 1.44187 1.47541 1.56171 2.08066 2.41503 2.76858 3.04122 3.27508 3.60385 3.74932 3.96853 4.15582 4.21433 4.31478 4.39559 4.42601 4.59510 4.61313 4.63118 4.86169 4.96866 5.00841 5.11464 5.14273 5.23680 5.24398 5.43146 5.51269 5.54197 5.70378 5.91394 6.02715 6.19991 6.63755 7.07808 7.30465 8.80639 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.037102 B = 0.004072 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.489642 B = 6874.071519 C = 7102.627678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.005 0.995 5 C -0.550 4.550 6 H 0.067 0.933 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.979 3.021 10 H -0.273 1.273 11 H -0.277 1.277 12 H -0.262 1.262 13 O -0.365 6.365 14 C 0.445 3.555 15 O -0.540 6.540 16 C -0.067 4.067 17 C -0.090 4.090 18 C -0.081 4.081 19 C -0.156 4.156 20 C 0.078 3.922 21 F -0.148 7.148 22 C -0.157 4.157 23 C -0.083 4.083 24 H 0.031 0.969 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.269 0.731 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 6.909 -11.145 16.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.168 4.168 3 C 0.173 3.827 4 H 0.023 0.977 5 C -0.587 4.587 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.802 3.198 10 H -0.199 1.199 11 H -0.202 1.202 12 H -0.186 1.186 13 O -0.282 6.282 14 C 0.289 3.711 15 O -0.431 6.431 16 C -0.104 4.104 17 C -0.090 4.090 18 C -0.099 4.099 19 C -0.175 4.175 20 C 0.059 3.941 21 F -0.127 7.127 22 C -0.176 4.176 23 C -0.101 4.101 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.169 0.831 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.935 6.810 -10.650 16.078 hybrid contribution 0.460 -0.007 0.821 0.941 sum -9.475 6.803 -9.829 15.253 Atomic orbital electron populations 1.21696 0.96181 1.00469 1.00179 1.21861 0.94533 0.98193 1.02256 1.20307 0.94350 0.89250 0.78821 0.97745 1.21369 0.90734 1.39794 1.06834 0.91499 1.25788 1.04106 0.93931 0.94437 1.70021 1.37401 1.38062 1.09848 0.85237 0.77899 0.77914 0.78708 1.19879 1.20225 1.18606 1.86458 1.36274 1.63170 1.42284 1.24292 0.79405 0.76336 0.91048 1.90625 1.55822 1.59086 1.37574 1.20421 0.94923 1.01804 0.93215 1.19561 0.94189 0.94695 1.00594 1.21149 0.90778 1.00224 0.97705 1.21327 0.99995 0.93944 1.02211 1.17964 0.80374 0.93295 1.02436 1.91470 1.43090 1.85342 1.92758 1.21310 0.91123 1.01944 1.03224 1.21147 0.97992 0.94796 0.96194 0.94942 0.92200 0.93904 0.89889 0.93447 0.92140 0.84555 0.84235 0.83324 0.82913 0.83087 0.83661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 8.56 71.98 0.62 -4.87 16 2 C -0.13 -6.46 5.49 30.59 0.17 -6.29 16 3 C 0.23 12.06 2.25 29.85 0.07 12.13 16 4 H 0.00 0.29 7.16 -2.38 -0.02 0.27 16 5 C -0.55 -30.73 8.90 25.60 0.23 -30.50 16 6 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 7 C 0.02 0.93 5.29 84.66 0.45 1.38 16 8 N -0.92 -52.17 11.29 21.45 0.24 -51.92 16 9 Si 0.98 42.39 29.54 68.60 2.03 44.41 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 13 O -0.37 -16.60 9.81 -51.40 -0.50 -17.11 16 14 C 0.44 17.01 6.41 71.24 0.46 17.46 16 15 O -0.54 -24.19 13.17 21.99 0.29 -23.90 16 16 C -0.07 -1.62 5.94 29.10 0.17 -1.45 16 17 C -0.09 -2.18 4.37 -19.86 -0.09 -2.27 16 18 C -0.08 -1.81 9.70 22.26 0.22 -1.59 16 19 C -0.16 -3.43 10.03 22.32 0.22 -3.20 16 20 C 0.08 1.87 7.30 22.37 0.16 2.03 16 21 F -0.15 -3.63 17.27 44.97 0.78 -2.85 16 22 C -0.16 -3.54 10.03 22.31 0.22 -3.32 16 23 C -0.08 -1.93 9.70 22.26 0.22 -1.72 16 24 H 0.03 1.49 7.80 -2.39 -0.02 1.47 16 25 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.04 1.71 6.06 -2.38 -0.01 1.69 16 27 H 0.08 4.54 5.95 -2.39 -0.01 4.53 16 28 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.27 14.40 8.31 -92.70 -0.77 13.63 16 30 H 0.14 2.64 8.09 -2.39 -0.02 2.62 16 31 H 0.14 2.58 8.08 -2.39 -0.02 2.56 16 32 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 33 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 34 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 35 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -66.81 304.13 7.03 -59.77 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 1.09 Total: 13.79 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 3.11 Total: -22.20 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.24 Total: -51.92 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -0.21 Total: -41.01 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.78 Total: -2.85 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -66.81 7.03 -59.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188119430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.808 kcal (2) G-P(sol) polarization free energy of solvation -66.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds