Wall clock time and date at job start Mon Mar 30 2020 07:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99837 * 2 1 4 4 H 1.48497 * 109.47410 * 270.00197 * 3 2 1 5 5 H 1.48503 * 109.47196 * 30.00193 * 3 2 1 6 6 H 1.48504 * 109.46947 * 150.00373 * 3 2 1 7 7 C 1.37877 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00134 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47217 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47055 * 179.97438 * 10 9 7 12 12 C 1.46847 * 111.00144 * 66.04768 * 11 10 9 13 13 C 1.53044 * 109.51335 * 185.83239 * 12 11 10 14 14 C 1.53117 * 109.27792 * 300.82256 * 13 12 11 15 15 C 1.53127 * 109.15989 * 57.65607 * 14 13 12 16 16 H 1.08997 * 109.50037 * 62.28538 * 15 14 13 17 17 C 1.50694 * 109.50110 * 182.36245 * 15 14 13 18 18 N 1.29023 * 124.91574 * 240.00043 * 17 15 14 19 19 C 1.31785 * 117.12323 * 179.97438 * 18 17 15 20 20 C 1.33636 * 114.50192 * 359.97438 * 19 18 17 21 21 S 1.70976 * 124.91464 * 59.69927 * 17 15 14 22 22 C 1.46830 * 110.98168 * 190.26186 * 11 10 9 23 23 H 0.96994 * 120.00121 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47363 * 60.00069 * 9 7 2 25 25 H 1.09006 * 109.47115 * 300.00220 * 9 7 2 26 26 H 1.08999 * 109.47028 * 59.99704 * 10 9 7 27 27 H 1.08996 * 109.47036 * 299.99497 * 10 9 7 28 28 H 1.09002 * 109.46448 * 65.81961 * 12 11 10 29 29 H 1.08994 * 109.45958 * 305.84326 * 12 11 10 30 30 H 1.09001 * 109.49858 * 60.76701 * 13 12 11 31 31 H 1.09002 * 109.49779 * 180.84687 * 13 12 11 32 32 H 1.08997 * 109.52073 * 177.56286 * 14 13 12 33 33 H 1.08998 * 109.52156 * 297.68928 * 14 13 12 34 34 H 1.07999 * 122.74843 * 180.02562 * 19 18 17 35 35 H 1.07999 * 126.03939 * 179.97438 * 20 19 18 36 36 H 1.08995 * 109.46742 * 54.13906 * 22 11 10 37 37 H 1.09004 * 109.46459 * 294.16736 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 0.0001 12 6 0.7653 -5.1121 -1.2525 13 6 -0.0992 -6.3715 -1.1584 14 6 0.8000 -7.5838 -0.9012 15 6 1.6012 -7.3518 0.3830 16 1 0.9175 -7.2606 1.2269 17 6 2.5315 -8.5148 0.6126 18 7 2.5138 -9.2810 1.6506 19 6 3.3995 -10.2559 1.6929 20 6 4.2091 -10.3157 0.6314 21 16 3.7585 -9.0146 -0.4682 22 6 2.4163 -6.0640 0.2443 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5570 0.8897 26 1 2.8721 -3.6043 0.8894 27 1 2.8720 -3.6043 -0.8905 28 1 1.4662 -5.2136 -2.0811 29 1 0.1267 -4.2450 -1.4212 30 1 -0.8096 -6.2647 -0.3387 31 1 -0.6410 -6.5115 -2.0938 32 1 0.1848 -8.4767 -0.7904 33 1 1.4840 -7.7144 -1.7397 34 1 3.4652 -10.9501 2.5176 35 1 4.9981 -11.0361 0.4738 36 1 2.9769 -5.8883 1.1624 37 1 3.1095 -6.1612 -0.5913 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195348372.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:16 Heat of formation + Delta-G solvation = 32.818577 kcal Electronic energy + Delta-G solvation = -17745.782382 eV Core-core repulsion = 15035.140261 eV Total energy + Delta-G solvation = -2710.642121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.95722 -38.61044 -34.53967 -32.68077 -31.73927 -29.64613 -28.94599 -25.34324 -25.09856 -22.90662 -22.69975 -20.40723 -20.28156 -19.31690 -17.86262 -16.49211 -15.80437 -15.22340 -14.86797 -14.57729 -14.47854 -14.39460 -13.92963 -13.42541 -13.08440 -13.01180 -12.64493 -12.14371 -11.98484 -11.67492 -11.25589 -11.16559 -10.95300 -10.75933 -10.61093 -10.46101 -10.30778 -9.82432 -9.73075 -9.53101 -9.36264 -9.12646 -8.96259 -8.31974 -7.75442 -5.98795 -4.01112 0.57343 1.23547 1.64612 2.71039 3.32678 3.39084 3.42354 3.86401 4.41886 4.57567 4.79317 4.85858 4.97160 5.02537 5.25651 5.32169 5.37222 5.44994 5.47712 5.66458 5.80294 5.85786 5.94907 5.98626 6.04941 6.16417 6.25687 6.38897 6.52350 6.53675 6.96372 7.48044 7.55919 7.62957 7.79235 7.90380 8.08842 8.44133 9.06065 9.62487 11.12547 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035727 B = 0.003780 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.527963 B = 7405.901735 C = 7784.145552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.535 5.535 12 C 0.051 3.949 13 C -0.114 4.114 14 C -0.111 4.111 15 C -0.013 4.013 16 H 0.111 0.889 17 C 0.071 3.929 18 N -0.478 5.478 19 C 0.039 3.961 20 C -0.271 4.271 21 S 0.119 5.881 22 C 0.065 3.935 23 H 0.260 0.740 24 H 0.018 0.982 25 H 0.025 0.975 26 H 0.061 0.939 27 H 0.021 0.979 28 H 0.027 0.973 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.174 0.826 35 H 0.175 0.825 36 H 0.075 0.925 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.390 -20.397 -2.091 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.062 4.062 11 N -0.259 5.259 12 C -0.077 4.077 13 C -0.152 4.152 14 C -0.150 4.150 15 C -0.036 4.036 16 H 0.129 0.871 17 C -0.207 4.207 18 N -0.191 5.191 19 C -0.112 4.112 20 C -0.411 4.411 21 S 0.373 5.627 22 C -0.064 4.064 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.044 0.956 26 H 0.080 0.920 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.191 0.809 35 H 0.192 0.808 36 H 0.094 0.906 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.877 -19.822 -2.249 20.537 hybrid contribution 1.286 0.158 0.143 1.303 sum 6.163 -19.664 -2.107 20.715 Atomic orbital electron populations 1.69967 1.06002 1.26575 1.50650 1.24985 0.94826 0.99147 0.95312 0.86604 0.79870 0.83537 0.78042 1.20729 1.21200 1.19895 1.21189 0.92983 0.91068 1.50878 0.92818 1.19103 0.93953 0.89984 0.97874 1.22341 0.96795 0.88057 0.99053 1.61955 1.27356 1.02012 1.34600 1.22170 0.96936 0.98588 0.90016 1.21590 0.97959 0.93479 1.02205 1.21702 0.98557 0.99148 0.95547 1.19963 0.94595 0.88232 1.00780 0.87108 1.27247 0.99934 1.00707 0.92839 1.66327 1.23903 1.05448 1.23452 1.21825 0.92543 0.97473 0.99336 1.27086 1.08528 1.05869 0.99569 1.84078 1.29992 1.24361 1.24266 1.22079 0.93642 0.89949 1.00779 0.92998 0.96394 0.95617 0.92024 0.96113 0.95513 0.89108 0.90642 0.91310 0.91534 0.92087 0.80882 0.80764 0.90620 0.95226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.73 4.91 -27.88 -0.14 0.59 16 10 C 0.06 1.34 4.90 -3.82 -0.02 1.33 16 11 N -0.53 -9.58 4.65 -234.68 -1.09 -10.67 16 12 C 0.05 0.82 5.30 -3.83 -0.02 0.80 16 13 C -0.11 -1.48 6.09 -26.65 -0.16 -1.65 16 14 C -0.11 -1.31 5.20 -26.61 -0.14 -1.45 16 15 C -0.01 -0.18 2.78 -91.69 -0.25 -0.43 16 16 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 17 C 0.07 0.91 6.04 -13.46 -0.08 0.83 16 18 N -0.48 -6.44 10.54 -11.87 -0.13 -6.57 16 19 C 0.04 0.42 11.35 -19.18 -0.22 0.20 16 20 C -0.27 -2.53 11.37 29.12 0.33 -2.20 16 21 S 0.12 1.26 22.46 -107.50 -2.41 -1.15 16 22 C 0.07 0.98 4.65 -3.84 -0.02 0.97 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.02 0.48 6.44 -51.93 -0.33 0.15 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.29 7.98 -51.93 -0.41 0.87 16 27 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 1.67 6.22 -51.93 -0.32 1.34 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.68 7.85 -51.93 -0.41 0.28 16 34 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.08 1.17 8.01 -51.93 -0.42 0.76 16 37 H 0.03 0.43 7.91 -51.93 -0.41 0.02 16 LS Contribution 312.50 15.07 4.71 4.71 Total: -1.00 -30.66 312.50 -9.99 -40.65 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -5.65 Total: -3.05 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -1.13 Total: -14.49 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.48 Total: -43.27 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.41 Total: -1.15 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.66 -9.99 -40.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195348372.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.468 kcal (2) G-P(sol) polarization free energy of solvation -30.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds