Wall clock time and date at job start Mon Mar 30 2020 07:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99837 * 2 1 4 4 H 1.48497 * 109.47410 * 270.00197 * 3 2 1 5 5 H 1.48503 * 109.47196 * 30.00193 * 3 2 1 6 6 H 1.48504 * 109.46947 * 150.00373 * 3 2 1 7 7 C 1.37877 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00134 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47217 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47055 * 179.97438 * 10 9 7 12 12 C 1.46847 * 111.00144 * 66.04768 * 11 10 9 13 13 C 1.53044 * 109.51335 * 185.83239 * 12 11 10 14 14 C 1.53117 * 109.27792 * 300.82256 * 13 12 11 15 15 C 1.53127 * 109.15989 * 57.65607 * 14 13 12 16 16 H 1.08997 * 109.50037 * 62.28538 * 15 14 13 17 17 C 1.50694 * 109.50110 * 182.36245 * 15 14 13 18 18 N 1.29023 * 124.91574 * 240.00043 * 17 15 14 19 19 C 1.31785 * 117.12323 * 179.97438 * 18 17 15 20 20 C 1.33636 * 114.50192 * 359.97438 * 19 18 17 21 21 S 1.70976 * 124.91464 * 59.69927 * 17 15 14 22 22 C 1.46830 * 110.98168 * 190.26186 * 11 10 9 23 23 H 0.96994 * 120.00121 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47363 * 60.00069 * 9 7 2 25 25 H 1.09006 * 109.47115 * 300.00220 * 9 7 2 26 26 H 1.08999 * 109.47028 * 59.99704 * 10 9 7 27 27 H 1.08996 * 109.47036 * 299.99497 * 10 9 7 28 28 H 1.09002 * 109.46448 * 65.81961 * 12 11 10 29 29 H 1.08994 * 109.45958 * 305.84326 * 12 11 10 30 30 H 1.09001 * 109.49858 * 60.76701 * 13 12 11 31 31 H 1.09002 * 109.49779 * 180.84687 * 13 12 11 32 32 H 1.08997 * 109.52073 * 177.56286 * 14 13 12 33 33 H 1.08998 * 109.52156 * 297.68928 * 14 13 12 34 34 H 1.07999 * 122.74843 * 180.02562 * 19 18 17 35 35 H 1.07999 * 126.03939 * 179.97438 * 20 19 18 36 36 H 1.08995 * 109.46742 * 54.13906 * 22 11 10 37 37 H 1.09004 * 109.46459 * 294.16736 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 0.0001 12 6 0.7653 -5.1121 -1.2525 13 6 -0.0992 -6.3715 -1.1584 14 6 0.8000 -7.5838 -0.9012 15 6 1.6012 -7.3518 0.3830 16 1 0.9175 -7.2606 1.2269 17 6 2.5315 -8.5148 0.6126 18 7 2.5138 -9.2810 1.6506 19 6 3.3995 -10.2559 1.6929 20 6 4.2091 -10.3157 0.6314 21 16 3.7585 -9.0146 -0.4682 22 6 2.4163 -6.0640 0.2443 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5570 0.8897 26 1 2.8721 -3.6043 0.8894 27 1 2.8720 -3.6043 -0.8905 28 1 1.4662 -5.2136 -2.0811 29 1 0.1267 -4.2450 -1.4212 30 1 -0.8096 -6.2647 -0.3387 31 1 -0.6410 -6.5115 -2.0938 32 1 0.1848 -8.4767 -0.7904 33 1 1.4840 -7.7144 -1.7397 34 1 3.4652 -10.9501 2.5176 35 1 4.9981 -11.0361 0.4738 36 1 2.9769 -5.8883 1.1624 37 1 3.1095 -6.1612 -0.5913 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195348372.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:16 Heat of formation + Delta-G solvation = 13.430608 kcal Electronic energy + Delta-G solvation = -17746.623108 eV Core-core repulsion = 15035.140261 eV Total energy + Delta-G solvation = -2711.482846 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.90382 -39.80405 -36.12079 -34.56360 -32.85254 -31.27363 -30.11559 -26.90925 -26.30087 -24.47038 -23.81931 -22.02117 -21.24425 -20.47566 -18.76638 -18.57337 -16.82636 -16.56275 -16.42178 -16.08445 -15.65286 -15.40915 -15.23010 -14.57900 -14.46135 -14.26092 -13.96638 -13.88773 -13.31802 -13.12026 -12.82272 -12.49611 -12.45327 -12.29587 -12.03556 -11.80704 -11.63114 -11.53133 -11.22134 -11.17274 -10.61204 -10.51352 -10.35706 -9.81447 -9.19982 -8.18705 -6.29830 -0.25663 0.42148 0.83039 1.41047 1.42572 1.53639 1.87179 2.40966 2.81153 3.14710 3.33404 3.75947 3.77233 4.00025 4.19442 4.26320 4.33773 4.41136 4.46637 4.55551 4.57351 4.57678 4.71737 4.74671 4.94968 4.98062 5.06392 5.08811 5.19472 5.24219 5.38452 5.47737 5.68690 5.79588 6.11334 6.27076 6.34447 6.79897 6.87202 7.39070 8.93367 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035727 B = 0.003780 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.527963 B = 7405.901735 C = 7784.145552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.037 3.963 10 C 0.080 3.920 11 N -0.548 5.548 12 C 0.050 3.950 13 C -0.107 4.107 14 C -0.103 4.103 15 C -0.006 4.006 16 H 0.092 0.908 17 C 0.045 3.955 18 N -0.505 5.505 19 C 0.018 3.982 20 C -0.253 4.253 21 S 0.139 5.861 22 C 0.070 3.930 23 H 0.264 0.736 24 H -0.001 1.001 25 H -0.009 1.009 26 H 0.060 0.940 27 H 0.024 0.976 28 H 0.035 0.965 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.197 0.803 35 H 0.209 0.791 36 H 0.067 0.933 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.132 -21.810 -2.793 23.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.047 4.047 11 N -0.273 5.273 12 C -0.077 4.077 13 C -0.145 4.145 14 C -0.142 4.142 15 C -0.028 4.028 16 H 0.110 0.890 17 C -0.233 4.233 18 N -0.220 5.220 19 C -0.132 4.132 20 C -0.392 4.392 21 S 0.392 5.608 22 C -0.059 4.059 23 H 0.072 0.928 24 H 0.017 0.983 25 H 0.010 0.990 26 H 0.079 0.921 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.214 0.786 35 H 0.226 0.774 36 H 0.086 0.914 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.622 -21.257 -2.952 22.459 hybrid contribution 0.764 0.514 0.370 0.993 sum 7.386 -20.742 -2.582 22.169 Atomic orbital electron populations 1.70106 1.07777 1.27752 1.51426 1.25944 0.95741 1.03247 0.94652 0.85446 0.78639 0.78432 0.78508 1.19673 1.20770 1.18808 1.21624 0.93509 0.92317 1.50904 0.92247 1.18918 0.94168 0.91721 0.95223 1.21964 0.95455 0.88228 0.99075 1.61846 1.27877 1.01735 1.35840 1.22176 0.96911 0.99119 0.89527 1.21548 0.97516 0.92315 1.03116 1.21662 0.98493 0.98887 0.95124 1.19766 0.94379 0.87780 1.00913 0.88953 1.27000 1.01229 1.01084 0.93947 1.66304 1.25197 1.06356 1.24130 1.22224 0.92584 0.97608 1.00767 1.27520 1.08224 1.05236 0.98197 1.83966 1.28654 1.24533 1.23625 1.22056 0.93526 0.89646 1.00682 0.92764 0.98304 0.99039 0.92136 0.95812 0.94656 0.92129 0.91623 0.88947 0.89997 0.90878 0.78621 0.77440 0.91438 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -31.40 9.11 25.60 0.23 -31.16 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.04 2.00 4.91 29.85 0.15 2.15 16 10 C 0.08 3.45 4.90 86.30 0.42 3.87 16 11 N -0.55 -20.07 4.65 -896.40 -4.17 -24.25 16 12 C 0.05 1.66 5.30 86.33 0.46 2.12 16 13 C -0.11 -2.70 6.09 30.65 0.19 -2.52 16 14 C -0.10 -2.28 5.20 30.68 0.16 -2.12 16 15 C -0.01 -0.16 2.78 -11.49 -0.03 -0.19 16 16 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 17 C 0.04 1.09 6.04 88.52 0.53 1.63 16 18 N -0.50 -13.04 10.54 -191.46 -2.02 -15.06 16 19 C 0.02 0.35 11.35 83.66 0.95 1.30 16 20 C -0.25 -3.90 11.37 66.78 0.76 -3.14 16 21 S 0.14 2.60 22.46 -56.49 -1.27 1.33 16 22 C 0.07 2.09 4.65 86.33 0.40 2.50 16 23 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 24 H 0.00 -0.07 6.44 -2.39 -0.02 -0.09 16 25 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 26 H 0.06 2.58 7.98 -2.39 -0.02 2.56 16 27 H 0.02 1.00 8.12 -2.39 -0.02 0.98 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 2.35 6.22 -2.39 -0.01 2.33 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.46 7.85 -2.39 -0.02 1.44 16 34 H 0.20 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.21 1.69 8.06 -2.91 -0.02 1.66 16 36 H 0.07 2.10 8.01 -2.39 -0.02 2.09 16 37 H 0.04 1.12 7.91 -2.38 -0.02 1.10 16 Total: -1.00 -67.36 312.50 0.57 -66.79 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 1.04 Total: 6.49 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 4.68 Total: -24.98 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -5.91 Total: -96.16 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.27 Total: 1.33 kcal Total: -67.36 0.57 -66.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195348372.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.223 kcal (2) G-P(sol) polarization free energy of solvation -67.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds