Wall clock time and date at job start Mon Mar 30 2020 07:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99680 * 2 1 4 4 H 1.48504 * 109.46752 * 239.99990 * 3 2 1 5 5 H 1.48500 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47058 * 120.00290 * 3 2 1 7 7 C 1.37881 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99571 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.46806 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47124 * 179.97438 * 10 9 7 12 12 C 1.46847 * 110.99812 * 314.21081 * 11 10 9 13 13 C 1.53034 * 109.52486 * 174.15668 * 12 11 10 14 14 C 1.53126 * 109.27454 * 59.18079 * 13 12 11 15 15 C 1.53114 * 109.16071 * 302.34640 * 14 13 12 16 16 C 1.46848 * 111.00135 * 190.00156 * 11 10 9 17 17 H 1.09002 * 109.45169 * 65.82734 * 16 11 10 18 18 C 1.50699 * 109.45889 * 305.85196 * 16 11 10 19 19 N 1.29022 * 124.91872 * 314.64189 * 18 16 11 20 20 C 1.31781 * 117.12295 * 179.81666 * 19 18 16 21 21 C 1.33638 * 114.50249 * 0.47267 * 20 19 18 22 22 S 1.70976 * 124.91334 * 134.95085 * 18 16 11 23 23 H 0.96997 * 120.00415 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47018 * 59.99849 * 9 7 2 25 25 H 1.09000 * 109.46836 * 299.99768 * 9 7 2 26 26 H 1.08999 * 109.47724 * 60.00325 * 10 9 7 27 27 H 1.09000 * 109.47436 * 299.99648 * 10 9 7 28 28 H 1.08999 * 109.46634 * 54.14179 * 12 11 10 29 29 H 1.09006 * 109.46422 * 294.18075 * 12 11 10 30 30 H 1.08997 * 109.50792 * 299.24185 * 13 12 11 31 31 H 1.09006 * 109.50471 * 179.11839 * 13 12 11 32 32 H 1.09001 * 109.52438 * 62.24983 * 14 13 12 33 33 H 1.09004 * 109.51760 * 182.43886 * 14 13 12 34 34 H 1.08994 * 109.50522 * 177.59764 * 15 14 13 35 35 H 1.09010 * 109.49966 * 297.67525 * 15 14 13 36 36 H 1.08000 * 122.75117 * 180.23072 * 20 19 18 37 37 H 1.08003 * 126.04255 * 179.72237 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5109 -4.9343 0.0012 12 6 0.4203 -4.9118 0.9842 13 6 -0.4101 -6.1909 0.8562 14 6 0.4919 -7.4051 1.0945 15 6 1.6464 -7.3785 0.0891 16 6 2.4172 -6.0650 0.2393 17 1 2.8256 -5.9967 1.2476 18 6 3.5427 -6.0258 -0.7621 19 7 3.3987 -5.8168 -2.0271 20 6 4.4917 -5.8112 -2.7633 21 6 5.6194 -6.0374 -2.0829 22 16 5.1944 -6.2594 -0.3874 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8720 -3.6043 -0.8895 28 1 -0.2160 -4.0460 0.8011 29 1 0.8382 -4.8490 1.9890 30 1 -0.8396 -6.2474 -0.1440 31 1 -1.2101 -6.1810 1.5965 32 1 0.8909 -7.3692 2.1082 33 1 -0.0859 -8.3197 0.9616 34 1 2.3157 -8.2171 0.2812 35 1 1.2492 -7.4543 -0.9232 36 1 4.4769 -5.6418 -3.8299 37 1 6.6153 -6.0778 -2.4988 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195364130.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:07 Heat of formation + Delta-G solvation = 40.696694 kcal Electronic energy + Delta-G solvation = -18349.625832 eV Core-core repulsion = 15639.325331 eV Total energy + Delta-G solvation = -2710.300500 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.87723 -38.33555 -34.21082 -32.57774 -31.97123 -29.08793 -28.97892 -25.66310 -24.71064 -23.28270 -22.37317 -20.32888 -19.99243 -18.73202 -17.95280 -16.48282 -15.57590 -14.93747 -14.87479 -14.43044 -14.38993 -14.12510 -13.91227 -13.26754 -13.01876 -12.83459 -12.50104 -12.21738 -11.90086 -11.42605 -11.13379 -11.02411 -10.94517 -10.62032 -10.57414 -10.43289 -10.23544 -9.86045 -9.39590 -9.25835 -9.20484 -9.04101 -8.74307 -8.31576 -7.66905 -5.98151 -4.00048 0.84490 1.46713 1.85935 3.05333 3.34389 3.38492 3.41201 4.26855 4.37038 4.53136 4.93953 5.03757 5.13831 5.23474 5.37595 5.41938 5.43634 5.49422 5.61811 5.81344 5.86724 6.01030 6.07281 6.10358 6.25368 6.34714 6.37663 6.44715 6.60547 6.66603 6.97595 7.51287 7.61980 7.76635 7.89657 8.01234 8.07748 8.45624 9.05862 9.63165 11.13253 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016600 B = 0.006388 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.335406 B = 4382.085729 C = 5674.853384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.024 3.976 10 C 0.065 3.935 11 N -0.517 5.517 12 C 0.051 3.949 13 C -0.118 4.118 14 C -0.118 4.118 15 C -0.103 4.103 16 C 0.162 3.838 17 H 0.052 0.948 18 C 0.076 3.924 19 N -0.445 5.445 20 C 0.043 3.957 21 C -0.266 4.266 22 S 0.092 5.908 23 H 0.261 0.739 24 H 0.026 0.974 25 H 0.021 0.979 26 H 0.015 0.985 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.174 0.826 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.722 -16.279 0.510 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.070 0.930 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.242 5.242 12 C -0.077 4.077 13 C -0.156 4.156 14 C -0.155 4.155 15 C -0.142 4.142 16 C 0.049 3.951 17 H 0.070 0.930 18 C -0.203 4.203 19 N -0.158 5.158 20 C -0.109 4.109 21 C -0.405 4.405 22 S 0.346 5.654 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.191 0.809 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.401 -16.330 0.739 17.555 hybrid contribution 1.080 1.359 -0.246 1.753 sum 7.481 -14.971 0.494 16.743 Atomic orbital electron populations 1.69948 1.05975 1.26685 1.50662 1.24968 0.94827 0.99086 0.95295 0.86672 0.79614 0.83211 0.78591 1.20248 1.21217 1.20310 1.21129 0.92885 0.91049 1.50883 0.93009 1.19215 0.94011 0.90304 0.97778 1.22331 0.97131 0.88011 0.98720 1.62025 1.10599 1.02397 1.49226 1.22253 0.93748 0.99003 0.92683 1.21640 0.97578 0.94017 1.02371 1.21576 0.96729 0.98652 0.98585 1.21592 0.96919 0.94342 1.01364 1.20185 0.88673 0.94232 0.92003 0.93025 1.27062 0.96680 1.01810 0.94773 1.66232 1.31263 1.14486 1.03772 1.21932 0.86181 1.01120 1.01646 1.26990 1.04260 1.13717 0.95571 1.83915 1.05294 1.66813 1.09337 0.92938 0.95561 0.96129 0.96712 0.91869 0.88290 0.95491 0.90989 0.91770 0.92380 0.91802 0.92046 0.90199 0.80912 0.80880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.64 4.22 -27.89 -0.12 0.52 16 10 C 0.06 1.45 4.60 -3.82 -0.02 1.43 16 11 N -0.52 -9.82 4.61 -228.08 -1.05 -10.87 16 12 C 0.05 0.89 4.85 -3.84 -0.02 0.87 16 13 C -0.12 -1.64 6.09 -26.65 -0.16 -1.80 16 14 C -0.12 -1.40 6.00 -26.61 -0.16 -1.56 16 15 C -0.10 -1.36 5.36 -26.65 -0.14 -1.50 16 16 C 0.16 2.56 2.30 -68.88 -0.16 2.40 16 17 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 18 C 0.08 1.21 4.80 -13.46 -0.06 1.15 16 19 N -0.44 -7.62 10.03 -11.87 -0.12 -7.74 16 20 C 0.04 0.60 11.35 -19.19 -0.22 0.38 16 21 C -0.27 -3.24 11.37 29.12 0.33 -2.91 16 22 S 0.09 1.21 23.18 -107.50 -2.49 -1.29 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.02 0.56 6.21 -51.93 -0.32 0.24 16 26 H 0.01 0.33 8.08 -51.93 -0.42 -0.09 16 27 H 0.06 1.50 6.99 -51.93 -0.36 1.14 16 28 H 0.10 1.98 5.81 -51.93 -0.30 1.68 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 36 H 0.17 1.99 8.06 -52.49 -0.42 1.56 16 37 H 0.17 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 310.00 15.07 4.67 4.67 Total: -1.00 -31.54 310.00 -10.01 -41.56 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -5.60 Total: -2.20 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -1.14 Total: -14.80 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.43 Total: -44.96 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.49 Total: -1.29 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.54 -10.01 -41.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195364130.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.252 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds