Wall clock time and date at job start Mon Mar 30 2020 07:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99680 * 2 1 4 4 H 1.48504 * 109.46752 * 239.99990 * 3 2 1 5 5 H 1.48500 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47058 * 120.00290 * 3 2 1 7 7 C 1.37881 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99571 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.46806 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47124 * 179.97438 * 10 9 7 12 12 C 1.46847 * 110.99812 * 314.21081 * 11 10 9 13 13 C 1.53034 * 109.52486 * 174.15668 * 12 11 10 14 14 C 1.53126 * 109.27454 * 59.18079 * 13 12 11 15 15 C 1.53114 * 109.16071 * 302.34640 * 14 13 12 16 16 C 1.46848 * 111.00135 * 190.00156 * 11 10 9 17 17 H 1.09002 * 109.45169 * 65.82734 * 16 11 10 18 18 C 1.50699 * 109.45889 * 305.85196 * 16 11 10 19 19 N 1.29022 * 124.91872 * 314.64189 * 18 16 11 20 20 C 1.31781 * 117.12295 * 179.81666 * 19 18 16 21 21 C 1.33638 * 114.50249 * 0.47267 * 20 19 18 22 22 S 1.70976 * 124.91334 * 134.95085 * 18 16 11 23 23 H 0.96997 * 120.00415 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47018 * 59.99849 * 9 7 2 25 25 H 1.09000 * 109.46836 * 299.99768 * 9 7 2 26 26 H 1.08999 * 109.47724 * 60.00325 * 10 9 7 27 27 H 1.09000 * 109.47436 * 299.99648 * 10 9 7 28 28 H 1.08999 * 109.46634 * 54.14179 * 12 11 10 29 29 H 1.09006 * 109.46422 * 294.18075 * 12 11 10 30 30 H 1.08997 * 109.50792 * 299.24185 * 13 12 11 31 31 H 1.09006 * 109.50471 * 179.11839 * 13 12 11 32 32 H 1.09001 * 109.52438 * 62.24983 * 14 13 12 33 33 H 1.09004 * 109.51760 * 182.43886 * 14 13 12 34 34 H 1.08994 * 109.50522 * 177.59764 * 15 14 13 35 35 H 1.09010 * 109.49966 * 297.67525 * 15 14 13 36 36 H 1.08000 * 122.75117 * 180.23072 * 20 19 18 37 37 H 1.08003 * 126.04255 * 179.72237 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5109 -4.9343 0.0012 12 6 0.4203 -4.9118 0.9842 13 6 -0.4101 -6.1909 0.8562 14 6 0.4919 -7.4051 1.0945 15 6 1.6464 -7.3785 0.0891 16 6 2.4172 -6.0650 0.2393 17 1 2.8256 -5.9967 1.2476 18 6 3.5427 -6.0258 -0.7621 19 7 3.3987 -5.8168 -2.0271 20 6 4.4917 -5.8112 -2.7633 21 6 5.6194 -6.0374 -2.0829 22 16 5.1944 -6.2594 -0.3874 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8720 -3.6043 -0.8895 28 1 -0.2160 -4.0460 0.8011 29 1 0.8382 -4.8490 1.9890 30 1 -0.8396 -6.2474 -0.1440 31 1 -1.2101 -6.1810 1.5965 32 1 0.8909 -7.3692 2.1082 33 1 -0.0859 -8.3197 0.9616 34 1 2.3157 -8.2171 0.2812 35 1 1.2492 -7.4543 -0.9232 36 1 4.4769 -5.6418 -3.8299 37 1 6.6153 -6.0778 -2.4988 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195364130.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:06 Heat of formation + Delta-G solvation = 20.148877 kcal Electronic energy + Delta-G solvation = -18350.516852 eV Core-core repulsion = 15639.325331 eV Total energy + Delta-G solvation = -2711.191520 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07165 -39.59111 -35.97285 -34.35417 -33.27643 -30.87837 -30.16691 -27.15816 -26.19551 -24.93100 -23.56732 -21.82873 -21.37774 -19.95319 -19.12151 -18.52579 -16.89183 -16.62546 -16.18576 -16.03664 -15.69496 -15.45076 -15.12408 -14.51888 -14.41208 -14.24568 -13.99755 -13.87955 -13.25065 -13.11336 -12.86284 -12.48964 -12.44044 -12.22156 -12.05891 -11.77426 -11.57010 -11.55006 -11.28865 -11.01390 -10.56362 -10.45237 -10.27797 -9.79386 -9.18383 -8.22816 -6.34483 -0.21960 0.42788 0.81011 1.36554 1.40117 1.48169 1.95679 2.37483 3.00428 3.09973 3.20600 3.81615 3.91941 4.02876 4.23240 4.28707 4.34436 4.41207 4.41859 4.54704 4.59463 4.61822 4.86852 4.89953 4.97189 5.03175 5.07847 5.20215 5.25738 5.31772 5.39820 5.49061 5.63163 5.75307 6.06490 6.24054 6.31585 6.80449 6.93553 7.34098 8.88999 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016600 B = 0.006388 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.335406 B = 4382.085729 C = 5674.853384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.053 0.947 9 C 0.036 3.964 10 C 0.089 3.911 11 N -0.529 5.529 12 C 0.051 3.949 13 C -0.112 4.112 14 C -0.111 4.111 15 C -0.097 4.097 16 C 0.158 3.842 17 H 0.059 0.941 18 C 0.042 3.958 19 N -0.482 5.482 20 C 0.015 3.985 21 C -0.248 4.248 22 S 0.130 5.870 23 H 0.265 0.735 24 H -0.012 1.012 25 H 0.006 0.994 26 H 0.013 0.987 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.030 0.970 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.190 0.810 37 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.569 -17.276 1.092 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.586 4.586 8 H 0.071 0.929 9 C -0.001 4.001 10 C -0.039 4.039 11 N -0.255 5.255 12 C -0.077 4.077 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.136 4.136 16 C 0.046 3.954 17 H 0.077 0.923 18 C -0.236 4.236 19 N -0.196 5.196 20 C -0.135 4.135 21 C -0.387 4.387 22 S 0.383 5.617 23 H 0.074 0.926 24 H 0.007 0.993 25 H 0.024 0.976 26 H 0.031 0.969 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.207 0.793 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 8.248 -17.351 1.327 19.257 hybrid contribution 0.540 1.640 -0.455 1.785 sum 8.788 -15.711 0.872 18.023 Atomic orbital electron populations 1.70084 1.07704 1.27938 1.51072 1.25925 0.95780 1.03162 0.94437 0.85516 0.78371 0.78110 0.79151 1.19439 1.20361 1.19001 1.21532 0.93211 0.92439 1.51460 0.92865 1.19002 0.94090 0.91841 0.95186 1.21844 0.95710 0.88581 0.97741 1.61925 1.11364 1.01882 1.50286 1.22220 0.93320 0.99766 0.92391 1.21604 0.97894 0.93039 1.02413 1.21574 0.96011 0.98427 0.98831 1.21583 0.97542 0.93604 1.00858 1.20337 0.88723 0.93806 0.92492 0.92286 1.27067 0.98315 1.03558 0.94700 1.66197 1.33426 1.15229 1.04782 1.22258 0.86202 1.02478 1.02604 1.27455 1.05290 1.10942 0.95002 1.83704 1.02688 1.65695 1.09585 0.92609 0.99321 0.97563 0.96886 0.93440 0.92060 0.95166 0.92144 0.89776 0.91011 0.89113 0.89482 0.91916 0.79274 0.77333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 2 C 0.01 0.32 5.46 84.66 0.46 0.78 16 3 Si 0.96 45.39 29.54 68.60 2.03 47.42 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -32.75 9.11 25.60 0.23 -32.51 16 8 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.04 2.03 4.22 29.85 0.13 2.15 16 10 C 0.09 4.14 4.60 86.30 0.40 4.54 16 11 N -0.53 -20.74 4.61 -875.50 -4.03 -24.77 16 12 C 0.05 1.84 4.85 86.32 0.42 2.25 16 13 C -0.11 -3.03 6.09 30.65 0.19 -2.85 16 14 C -0.11 -2.37 6.00 30.67 0.18 -2.18 16 15 C -0.10 -2.40 5.36 30.64 0.16 -2.24 16 16 C 0.16 4.94 2.30 44.19 0.10 5.04 16 17 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 18 C 0.04 1.31 4.80 88.52 0.42 1.73 16 19 N -0.48 -16.56 10.03 -191.45 -1.92 -18.48 16 20 C 0.01 0.41 11.35 83.66 0.95 1.36 16 21 C -0.25 -5.43 11.37 66.78 0.76 -4.67 16 22 S 0.13 3.13 23.18 -56.49 -1.31 1.82 16 23 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 24 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 25 H 0.01 0.36 6.21 -2.39 -0.01 0.35 16 26 H 0.01 0.60 8.08 -2.39 -0.02 0.58 16 27 H 0.05 2.34 6.99 -2.39 -0.02 2.32 16 28 H 0.06 2.64 5.81 -2.39 -0.01 2.63 16 29 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.19 4.20 8.06 -2.91 -0.02 4.18 16 37 H 0.21 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -70.61 310.00 0.50 -70.11 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.04 Total: 7.95 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 4.41 Total: -26.60 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -5.67 Total: -100.70 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -1.31 Total: 1.82 kcal Total: -70.61 0.50 -70.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195364130.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.263 kcal (2) G-P(sol) polarization free energy of solvation -70.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds