Wall clock time and date at job start Mon Mar 30 2020 07:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35905 * 116.99842 * 2 1 4 4 C 1.38757 * 120.05461 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.93863 * 179.97438 * 4 3 2 6 6 C 1.38280 * 120.06013 * 0.02562 * 5 4 3 7 7 C 1.38240 * 120.11169 * 359.97438 * 6 5 4 8 8 C 1.38169 * 120.05510 * 359.68546 * 7 6 5 9 9 C 1.50701 * 120.02936 * 180.29773 * 8 7 6 10 10 O 1.42897 * 109.47098 * 335.31578 * 9 8 7 11 11 Si 1.63100 * 114.00240 * 210.00128 * 10 9 8 12 12 C 1.86306 * 109.47176 * 59.99902 * 11 10 9 13 13 C 1.86298 * 109.47597 * 179.97438 * 11 10 9 14 14 C 1.86302 * 109.47044 * 300.00332 * 11 10 9 15 15 C 1.50699 * 109.47280 * 95.31540 * 9 8 7 16 16 N 1.27941 * 120.00002 * 130.00067 * 15 9 8 17 17 Si 1.86793 * 120.00172 * 310.00087 * 15 9 8 18 18 H 1.48505 * 109.47201 * 359.97438 * 17 15 9 19 19 H 1.48497 * 109.47636 * 119.99953 * 17 15 9 20 20 H 1.48502 * 109.47309 * 239.99956 * 17 15 9 21 21 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47054 * 299.99727 * 1 2 3 23 23 H 1.09000 * 109.47187 * 59.99782 * 1 2 3 24 24 H 1.07997 * 120.02528 * 359.97438 * 4 3 2 25 25 H 1.08005 * 119.96887 * 180.02562 * 5 4 3 26 26 H 1.08002 * 119.94689 * 179.97438 * 6 5 4 27 27 H 1.07998 * 119.97593 * 179.97438 * 7 6 5 28 28 H 1.08999 * 109.46909 * 215.31616 * 9 8 7 29 29 H 1.08998 * 109.46941 * 59.99914 * 12 11 10 30 30 H 1.08998 * 109.47481 * 180.02562 * 12 11 10 31 31 H 1.09009 * 109.46916 * 300.00304 * 12 11 10 32 32 H 1.09003 * 109.47086 * 60.00101 * 13 11 10 33 33 H 1.08998 * 109.47229 * 180.02562 * 13 11 10 34 34 H 1.08998 * 109.46878 * 300.00306 * 13 11 10 35 35 H 1.09000 * 109.47589 * 59.99435 * 14 11 10 36 36 H 1.09002 * 109.47088 * 180.02562 * 14 11 10 37 37 H 1.09003 * 109.46937 * 299.99469 * 14 11 10 38 38 H 0.96997 * 120.00130 * 359.97438 * 16 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0005 7 6 4.0559 2.5172 0.0000 8 6 3.4311 1.2849 0.0066 9 6 4.2537 0.0222 0.0128 10 8 5.5392 0.2885 -0.5517 11 14 6.2118 -0.9929 -1.3039 12 6 5.1044 -1.5476 -2.6957 13 6 7.8746 -0.5081 -1.9899 14 6 6.4240 -2.3868 -0.0862 15 6 4.4182 -0.4633 1.4299 16 7 4.1647 -1.6829 1.7217 17 14 4.9920 0.7156 2.7604 18 1 5.2166 2.0589 2.1683 19 1 3.9561 0.8082 3.8202 20 1 6.2603 0.2168 3.3503 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2128 2.3203 0.0005 25 1 1.3340 4.5114 0.0019 26 1 3.7922 4.6381 0.0005 27 1 5.1343 2.5753 -0.0008 28 1 3.7492 -0.7429 -0.5772 29 1 4.9802 -0.7321 -3.4082 30 1 5.5536 -2.4043 -3.1982 31 1 4.1312 -1.8313 -2.2947 32 1 8.5228 -0.1833 -1.1759 33 1 8.3239 -1.3643 -2.4929 34 1 7.7500 0.3073 -2.7024 35 1 5.4510 -2.6704 0.3148 36 1 6.8740 -3.2430 -0.5887 37 1 7.0720 -2.0623 0.7281 38 1 3.8664 -2.2950 1.0310 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196122514.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:28 Heat of formation + Delta-G solvation = -67.667637 kcal Electronic energy + Delta-G solvation = -19293.500129 eV Core-core repulsion = 16453.005685 eV Total energy + Delta-G solvation = -2840.494444 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.120 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.42000 -39.21641 -38.03256 -35.70260 -32.64382 -31.07200 -29.59462 -28.65774 -28.42282 -28.35389 -27.18741 -23.18467 -22.97170 -21.69897 -19.15100 -18.20509 -17.52293 -17.17267 -16.67277 -16.58370 -15.76039 -15.48142 -15.19138 -14.57018 -14.38033 -14.22921 -13.89163 -13.81532 -13.70099 -13.43516 -13.31892 -13.16287 -13.14807 -12.87970 -12.75116 -12.65443 -12.41837 -12.21854 -12.04949 -11.69268 -11.55181 -11.32039 -10.74598 -10.69255 -10.16353 -9.63016 -9.11512 0.27711 0.49256 0.81044 1.31287 1.45978 1.74459 1.81336 1.96478 1.97968 2.05903 2.25940 2.41181 2.79447 3.68876 3.78664 3.88934 4.04210 4.09264 4.17589 4.21328 4.37034 4.47426 4.52762 4.61152 4.65189 4.68418 4.70093 4.72441 4.73841 4.80063 4.83904 5.02370 5.08039 5.35832 5.43778 5.51332 5.55618 5.58351 5.67966 5.85150 6.35604 6.84951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.137 3.863 4 C -0.211 4.211 5 C -0.072 4.072 6 C -0.162 4.162 7 C -0.046 4.046 8 C -0.132 4.132 9 C 0.151 3.849 10 O -0.610 6.610 11 Si 1.250 2.750 12 C -0.509 4.509 13 C -0.463 4.463 14 C -0.514 4.514 15 C -0.044 4.044 16 N -0.606 5.606 17 Si 1.055 2.945 18 H -0.233 1.233 19 H -0.250 1.250 20 H -0.247 1.247 21 H 0.101 0.899 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.130 0.870 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.146 0.854 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.474 1.934 -1.087 2.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.091 3.909 4 C -0.230 4.230 5 C -0.090 4.090 6 C -0.180 4.180 7 C -0.064 4.064 8 C -0.134 4.134 9 C 0.092 3.908 10 O -0.567 6.567 11 Si 1.387 2.613 12 C -0.611 4.611 13 C -0.570 4.570 14 C -0.616 4.616 15 C -0.290 4.290 16 N -0.221 5.221 17 Si 0.868 3.132 18 H -0.156 1.156 19 H -0.174 1.174 20 H -0.171 1.171 21 H 0.119 0.881 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.148 0.852 25 H 0.145 0.855 26 H 0.146 0.854 27 H 0.163 0.837 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.101 1.949 0.468 2.287 hybrid contribution -0.809 -0.880 -1.919 2.261 sum -1.909 1.069 -1.452 2.626 Atomic orbital electron populations 1.23106 0.77851 1.04249 1.01634 1.86037 1.21834 1.26863 1.88536 1.18785 0.91283 0.84586 0.96199 1.21202 1.00135 0.92168 1.09508 1.21046 0.94864 0.97039 0.96077 1.21157 0.93844 0.98716 1.04279 1.20994 1.01184 0.90190 0.94005 1.18901 0.89688 0.95194 1.09583 1.20403 0.82394 0.95069 0.92934 1.85369 1.33869 1.62684 1.74789 0.77320 0.65193 0.55768 0.63005 1.26979 1.11231 1.06649 1.16253 1.26250 1.17464 1.06036 1.07217 1.27251 1.05127 1.16109 1.13120 1.32252 0.95009 0.99428 1.02307 1.69467 1.07153 1.04036 1.41446 0.83687 0.80147 0.75669 0.73701 1.15576 1.17400 1.17085 0.88074 0.92325 0.92400 0.85191 0.85544 0.85393 0.83668 0.90553 0.90825 0.90721 0.91617 0.90566 0.90476 0.90649 0.91478 0.90757 0.90627 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 9.81 101.05 0.99 0.95 16 2 O -0.32 -0.49 9.63 -19.44 -0.19 -0.68 16 3 C 0.14 0.26 6.66 -39.22 -0.26 0.00 16 4 C -0.21 -0.14 9.04 -39.43 -0.36 -0.49 16 5 C -0.07 -0.01 10.04 -39.61 -0.40 -0.41 16 6 C -0.16 -0.05 10.04 -39.57 -0.40 -0.45 16 7 C -0.05 -0.05 7.37 -39.61 -0.29 -0.35 16 8 C -0.13 -0.26 4.15 -104.47 -0.43 -0.69 16 9 C 0.15 0.22 1.77 -29.03 -0.05 0.17 16 10 O -0.61 -0.42 6.89 -35.23 -0.24 -0.66 16 11 Si 1.25 -0.96 12.68 -169.99 -2.16 -3.12 16 12 C -0.51 0.02 8.56 101.05 0.87 0.88 16 13 C -0.46 0.33 8.65 101.05 0.87 1.21 16 14 C -0.51 -0.14 7.98 101.05 0.81 0.66 16 15 C -0.04 -0.09 4.12 -13.90 -0.06 -0.15 16 16 N -0.61 -1.48 11.99 56.23 0.67 -0.81 16 17 Si 1.05 1.63 28.18 -169.99 -4.79 -3.17 16 18 H -0.23 -0.08 5.68 56.52 0.32 0.25 16 19 H -0.25 -0.56 7.11 56.52 0.40 -0.16 16 20 H -0.25 -0.43 7.11 56.52 0.40 -0.03 16 21 H 0.10 -0.30 8.14 -51.93 -0.42 -0.72 16 22 H 0.06 -0.13 7.66 -51.93 -0.40 -0.53 16 23 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 24 H 0.13 -0.16 6.30 -52.49 -0.33 -0.49 16 25 H 0.13 -0.24 8.06 -52.48 -0.42 -0.67 16 26 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 27 H 0.15 0.02 7.12 -52.49 -0.37 -0.35 16 28 H 0.08 0.07 5.42 -51.93 -0.28 -0.21 16 29 H 0.07 0.02 7.96 -51.93 -0.41 -0.39 16 30 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 31 H 0.06 0.02 7.10 -51.92 -0.37 -0.35 16 32 H 0.08 -0.06 7.96 -51.93 -0.41 -0.47 16 33 H 0.08 -0.10 7.96 -51.93 -0.41 -0.51 16 34 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 35 H 0.07 0.05 4.71 -51.93 -0.24 -0.20 16 36 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 37 H 0.07 0.06 7.96 -51.93 -0.41 -0.35 16 38 H 0.32 0.39 7.11 -40.82 -0.29 0.10 16 LS Contribution 310.56 15.07 4.68 4.68 Total: 0.00 -3.55 310.56 -6.46 -10.01 By element: Atomic # 1 Polarization: -1.87 SS G_CDS: -5.72 Total: -7.60 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 1.29 Total: 1.34 kcal Atomic # 7 Polarization: -1.48 SS G_CDS: 0.67 Total: -0.81 kcal Atomic # 8 Polarization: -0.91 SS G_CDS: -0.43 Total: -1.34 kcal Atomic # 14 Polarization: 0.67 SS G_CDS: -6.95 Total: -6.28 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -3.55 -6.46 -10.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196122514.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.659 kcal (2) G-P(sol) polarization free energy of solvation -3.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds