Wall clock time and date at job start Mon Mar 30 2020 07:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35905 * 116.99842 * 2 1 4 4 C 1.38757 * 120.05461 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.93863 * 179.97438 * 4 3 2 6 6 C 1.38280 * 120.06013 * 0.02562 * 5 4 3 7 7 C 1.38240 * 120.11169 * 359.97438 * 6 5 4 8 8 C 1.38169 * 120.05510 * 359.68546 * 7 6 5 9 9 C 1.50701 * 120.02936 * 180.29773 * 8 7 6 10 10 O 1.42897 * 109.47098 * 335.31578 * 9 8 7 11 11 Si 1.63100 * 114.00240 * 210.00128 * 10 9 8 12 12 C 1.86306 * 109.47176 * 59.99902 * 11 10 9 13 13 C 1.86298 * 109.47597 * 179.97438 * 11 10 9 14 14 C 1.86302 * 109.47044 * 300.00332 * 11 10 9 15 15 C 1.50699 * 109.47280 * 95.31540 * 9 8 7 16 16 N 1.27941 * 120.00002 * 130.00067 * 15 9 8 17 17 Si 1.86793 * 120.00172 * 310.00087 * 15 9 8 18 18 H 1.48505 * 109.47201 * 359.97438 * 17 15 9 19 19 H 1.48497 * 109.47636 * 119.99953 * 17 15 9 20 20 H 1.48502 * 109.47309 * 239.99956 * 17 15 9 21 21 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47054 * 299.99727 * 1 2 3 23 23 H 1.09000 * 109.47187 * 59.99782 * 1 2 3 24 24 H 1.07997 * 120.02528 * 359.97438 * 4 3 2 25 25 H 1.08005 * 119.96887 * 180.02562 * 5 4 3 26 26 H 1.08002 * 119.94689 * 179.97438 * 6 5 4 27 27 H 1.07998 * 119.97593 * 179.97438 * 7 6 5 28 28 H 1.08999 * 109.46909 * 215.31616 * 9 8 7 29 29 H 1.08998 * 109.46941 * 59.99914 * 12 11 10 30 30 H 1.08998 * 109.47481 * 180.02562 * 12 11 10 31 31 H 1.09009 * 109.46916 * 300.00304 * 12 11 10 32 32 H 1.09003 * 109.47086 * 60.00101 * 13 11 10 33 33 H 1.08998 * 109.47229 * 180.02562 * 13 11 10 34 34 H 1.08998 * 109.46878 * 300.00306 * 13 11 10 35 35 H 1.09000 * 109.47589 * 59.99435 * 14 11 10 36 36 H 1.09002 * 109.47088 * 180.02562 * 14 11 10 37 37 H 1.09003 * 109.46937 * 299.99469 * 14 11 10 38 38 H 0.96997 * 120.00130 * 359.97438 * 16 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0005 7 6 4.0559 2.5172 0.0000 8 6 3.4311 1.2849 0.0066 9 6 4.2537 0.0222 0.0128 10 8 5.5392 0.2885 -0.5517 11 14 6.2118 -0.9929 -1.3039 12 6 5.1044 -1.5476 -2.6957 13 6 7.8746 -0.5081 -1.9899 14 6 6.4240 -2.3868 -0.0862 15 6 4.4182 -0.4633 1.4299 16 7 4.1647 -1.6829 1.7217 17 14 4.9920 0.7156 2.7604 18 1 5.2166 2.0589 2.1683 19 1 3.9561 0.8082 3.8202 20 1 6.2603 0.2168 3.3503 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2128 2.3203 0.0005 25 1 1.3340 4.5114 0.0019 26 1 3.7922 4.6381 0.0005 27 1 5.1343 2.5753 -0.0008 28 1 3.7492 -0.7429 -0.5772 29 1 4.9802 -0.7321 -3.4082 30 1 5.5536 -2.4043 -3.1982 31 1 4.1312 -1.8313 -2.2947 32 1 8.5228 -0.1833 -1.1759 33 1 8.3239 -1.3643 -2.4929 34 1 7.7500 0.3073 -2.7024 35 1 5.4510 -2.6704 0.3148 36 1 6.8740 -3.2430 -0.5887 37 1 7.0720 -2.0623 0.7281 38 1 3.8664 -2.2950 1.0310 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196122514.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:28 Heat of formation + Delta-G solvation = -57.362322 kcal Electronic energy + Delta-G solvation = -19293.053257 eV Core-core repulsion = 16453.005685 eV Total energy + Delta-G solvation = -2840.047572 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.42174 -39.25208 -38.03247 -35.80725 -32.64963 -31.05731 -29.57883 -28.62420 -28.42511 -28.26194 -27.22322 -23.20787 -22.98431 -21.78050 -19.14066 -18.22992 -17.61593 -17.16358 -16.64803 -16.56421 -15.87331 -15.44174 -15.17897 -14.53047 -14.37518 -14.21944 -13.92416 -13.85784 -13.68617 -13.45882 -13.26116 -13.15060 -13.11373 -12.86765 -12.83135 -12.68691 -12.40153 -12.19643 -12.00731 -11.72946 -11.61956 -11.41395 -10.74119 -10.73354 -10.22590 -9.66855 -9.13222 0.25226 0.47899 0.70910 1.18633 1.44404 1.63206 1.83035 1.87295 1.92039 2.01823 2.32149 2.42219 2.78567 3.65597 3.72944 3.92225 4.05973 4.10724 4.31566 4.35036 4.44437 4.49345 4.56577 4.63773 4.68355 4.70002 4.71059 4.74065 4.78449 4.80125 4.83301 5.03465 5.08414 5.37628 5.44409 5.52729 5.54944 5.61357 5.67601 5.87862 6.37841 6.73767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.121 3.879 4 C -0.218 4.218 5 C -0.077 4.077 6 C -0.167 4.167 7 C -0.057 4.057 8 C -0.148 4.148 9 C 0.152 3.848 10 O -0.614 6.614 11 Si 1.281 2.719 12 C -0.517 4.517 13 C -0.467 4.467 14 C -0.523 4.523 15 C -0.045 4.045 16 N -0.621 5.621 17 Si 1.056 2.944 18 H -0.214 1.214 19 H -0.263 1.263 20 H -0.252 1.252 21 H 0.112 0.888 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.145 0.855 25 H 0.147 0.853 26 H 0.146 0.854 27 H 0.152 0.848 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 2.693 -1.467 3.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.075 3.925 4 C -0.237 4.237 5 C -0.095 4.095 6 C -0.185 4.185 7 C -0.075 4.075 8 C -0.149 4.149 9 C 0.093 3.907 10 O -0.571 6.571 11 Si 1.417 2.583 12 C -0.618 4.618 13 C -0.574 4.574 14 C -0.624 4.624 15 C -0.291 4.291 16 N -0.237 5.237 17 Si 0.869 3.131 18 H -0.136 1.136 19 H -0.188 1.188 20 H -0.176 1.176 21 H 0.130 0.870 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.163 0.837 25 H 0.165 0.835 26 H 0.164 0.836 27 H 0.169 0.831 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.199 2.703 0.080 2.958 hybrid contribution -0.821 -1.133 -1.796 2.276 sum -2.020 1.570 -1.715 3.081 Atomic orbital electron populations 1.23309 0.76560 1.05292 1.02364 1.86011 1.23305 1.27069 1.88648 1.19003 0.91582 0.85111 0.96794 1.21461 1.01011 0.92055 1.09147 1.21358 0.95112 0.97652 0.95343 1.21439 0.94141 0.99238 1.03647 1.21172 1.01683 0.90323 0.94320 1.19056 0.90018 0.95552 1.10320 1.20344 0.82650 0.95165 0.92559 1.85359 1.33627 1.63307 1.74834 0.76805 0.64803 0.54748 0.61987 1.27077 1.11273 1.06799 1.16622 1.26281 1.17336 1.06410 1.07397 1.27382 1.04711 1.16986 1.13364 1.32384 0.94485 0.99309 1.02893 1.69470 1.07810 1.04473 1.41931 0.83703 0.79413 0.76676 0.73259 1.13566 1.18755 1.17573 0.86974 0.91672 0.91541 0.83702 0.83483 0.83587 0.83086 0.90511 0.91107 0.90249 0.92106 0.90422 0.89808 0.90494 0.92044 0.90264 0.91213 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.28 9.63 -92.49 -0.89 -2.17 16 3 C 0.12 0.51 6.66 22.51 0.15 0.66 16 4 C -0.22 -0.22 9.04 22.37 0.20 -0.02 16 5 C -0.08 0.05 10.04 22.25 0.22 0.27 16 6 C -0.17 0.01 10.04 22.28 0.22 0.23 16 7 C -0.06 -0.13 7.37 22.25 0.16 0.03 16 8 C -0.15 -0.65 4.15 -19.77 -0.08 -0.73 16 9 C 0.15 0.56 1.77 29.10 0.05 0.61 16 10 O -0.61 -1.08 6.89 -148.98 -1.03 -2.11 16 11 Si 1.28 -1.55 12.68 68.60 0.87 -0.68 16 12 C -0.52 -0.19 8.56 113.37 0.97 0.78 16 13 C -0.47 0.80 8.65 113.37 0.98 1.79 16 14 C -0.52 -0.65 7.98 113.37 0.90 0.26 16 15 C -0.05 -0.22 4.12 88.67 0.37 0.14 16 16 N -0.62 -3.77 11.99 24.11 0.29 -3.48 16 17 Si 1.06 3.97 28.18 68.60 1.93 5.90 16 18 H -0.21 -0.11 5.68 99.48 0.56 0.45 16 19 H -0.26 -1.50 7.11 99.48 0.71 -0.79 16 20 H -0.25 -1.08 7.11 99.48 0.71 -0.37 16 21 H 0.11 -0.64 8.14 -2.39 -0.02 -0.66 16 22 H 0.06 -0.30 7.66 -2.38 -0.02 -0.31 16 23 H 0.07 -0.33 7.66 -2.39 -0.02 -0.35 16 24 H 0.15 -0.44 6.30 -2.91 -0.02 -0.46 16 25 H 0.15 -0.79 8.06 -2.91 -0.02 -0.82 16 26 H 0.15 -0.64 8.06 -2.91 -0.02 -0.67 16 27 H 0.15 0.03 7.12 -2.91 -0.02 0.00 16 28 H 0.08 0.23 5.42 -2.39 -0.01 0.22 16 29 H 0.07 0.07 7.96 -2.39 -0.02 0.05 16 30 H 0.08 -0.06 7.96 -2.39 -0.02 -0.08 16 31 H 0.06 0.08 7.10 -2.38 -0.02 0.07 16 32 H 0.08 -0.14 7.96 -2.39 -0.02 -0.16 16 33 H 0.08 -0.25 7.96 -2.39 -0.02 -0.27 16 34 H 0.08 -0.14 7.96 -2.39 -0.02 -0.16 16 35 H 0.06 0.15 4.71 -2.39 -0.01 0.14 16 36 H 0.08 -0.01 7.96 -2.39 -0.02 -0.03 16 37 H 0.07 0.17 7.96 -2.39 -0.02 0.15 16 38 H 0.33 1.23 7.11 -92.71 -0.66 0.57 16 Total: 0.00 -8.37 310.56 7.45 -0.93 By element: Atomic # 1 Polarization: -4.48 SS G_CDS: 1.00 Total: -3.47 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 5.27 Total: 5.08 kcal Atomic # 7 Polarization: -3.77 SS G_CDS: 0.29 Total: -3.48 kcal Atomic # 8 Polarization: -2.36 SS G_CDS: -1.92 Total: -4.28 kcal Atomic # 14 Polarization: 2.42 SS G_CDS: 2.80 Total: 5.23 kcal Total: -8.37 7.45 -0.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196122514.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.437 kcal (2) G-P(sol) polarization free energy of solvation -8.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -0.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds