Wall clock time and date at job start Mon Mar 30 2020 06:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38308 * 119.91904 * 2 1 4 4 C 1.38077 * 120.07870 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.04161 * 180.02562 * 4 3 2 6 6 C 1.38974 * 119.91936 * 0.02562 * 4 3 2 7 7 S 1.76209 * 120.07829 * 180.02562 * 6 4 3 8 8 C 1.81400 * 103.00153 * 89.99724 * 7 6 4 9 9 C 1.52999 * 109.46735 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47362 * 304.99284 * 9 8 7 11 11 O 1.42895 * 109.47283 * 65.00148 * 9 8 7 12 12 C 1.50706 * 109.46573 * 184.99941 * 9 8 7 13 13 H 1.07995 * 120.00167 * 359.72054 * 12 9 8 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 9 17 17 H 1.48490 * 109.47405 * 60.00219 * 16 14 12 18 18 H 1.48503 * 109.46845 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47399 * 299.99813 * 16 14 12 20 20 C 1.38976 * 119.84159 * 0.27357 * 6 4 3 21 21 C 1.50698 * 120.04027 * 179.72954 * 20 6 4 22 22 C 1.38085 * 119.91343 * 359.40540 * 20 6 4 23 23 H 1.08999 * 109.47781 * 89.99714 * 1 2 3 24 24 H 1.09004 * 109.47249 * 210.00570 * 1 2 3 25 25 H 1.09009 * 109.46892 * 329.99939 * 1 2 3 26 26 H 1.07997 * 119.96062 * 359.97438 * 3 2 1 27 27 H 1.09007 * 109.47060 * 269.97796 * 5 4 3 28 28 H 1.09000 * 109.47078 * 29.97432 * 5 4 3 29 29 H 1.08997 * 109.47783 * 149.97576 * 5 4 3 30 30 H 1.08994 * 109.47292 * 59.99830 * 8 7 6 31 31 H 1.08998 * 109.46594 * 300.00098 * 8 7 6 32 32 H 0.96695 * 114.00385 * 60.00116 * 11 9 8 33 33 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 34 34 H 1.08994 * 109.47597 * 89.99824 * 21 20 6 35 35 H 1.09000 * 109.46705 * 210.00009 * 21 20 6 36 36 H 1.09005 * 109.47338 * 330.00030 * 21 20 6 37 37 H 1.08002 * 119.95714 * 180.31637 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1988 0.0000 4 6 3.5776 1.2026 0.0005 5 6 4.3284 2.5092 0.0011 6 6 4.2741 0.0000 0.0005 7 16 6.0362 0.0000 0.0019 8 6 6.4430 -0.0007 1.7697 9 6 7.9631 -0.0001 1.9432 10 1 8.3913 -0.8415 1.3984 11 8 8.5004 1.2214 1.4321 12 6 8.3016 -0.1245 3.4064 13 1 7.5116 -0.1922 4.1396 14 6 9.6200 -0.1466 3.8094 15 7 10.5820 -0.0586 2.9170 16 14 10.0397 -0.3015 5.6231 17 1 9.4810 -1.5708 6.1538 18 1 11.5151 -0.3008 5.7915 19 1 9.4567 0.8447 6.3658 20 6 3.5776 -1.2026 -0.0058 21 6 4.3284 -2.5092 -0.0119 22 6 2.1968 -1.1986 0.0004 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8901 0.5139 26 1 1.6549 2.1329 -0.0004 27 1 4.5102 2.8243 -1.0265 28 1 3.7374 3.2677 0.5145 29 1 5.2807 2.3810 0.5156 30 1 6.0237 -0.8908 2.2387 31 1 6.0236 0.8891 2.2393 32 1 8.1628 2.0139 1.8715 33 1 11.5095 -0.0738 3.2007 34 1 4.5090 -2.8294 1.0141 35 1 3.7379 -3.2650 -0.5298 36 1 5.2813 -2.3783 -0.5247 37 1 1.6548 -2.1328 0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211533683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:36 Heat of formation + Delta-G solvation = -50.011270 kcal Electronic energy + Delta-G solvation = -17688.871726 eV Core-core repulsion = 14942.345082 eV Total energy + Delta-G solvation = -2746.526644 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.44227 -35.85811 -33.50681 -33.49762 -32.17413 -29.65175 -27.89289 -26.74231 -26.63196 -25.29395 -21.30913 -20.67396 -20.55688 -17.22518 -16.89264 -15.94726 -14.72739 -14.63667 -14.39247 -14.20979 -14.17074 -13.87984 -13.26893 -13.24272 -12.98235 -12.92432 -12.64114 -12.52672 -12.19059 -11.70709 -11.41832 -11.32843 -11.16493 -11.13480 -10.96224 -10.88311 -10.72800 -10.09681 -9.85264 -9.11679 -8.65098 -8.48421 -8.41949 -8.11397 -6.98379 -6.06245 -4.26471 1.13404 1.44778 2.33385 3.26177 3.26788 3.31892 3.34145 3.81059 4.35402 4.77248 4.77366 4.93368 5.20538 5.22907 5.29883 5.42748 5.53603 5.54211 5.65788 5.76578 5.81732 5.86133 5.86210 5.95282 5.96209 6.06862 6.26297 6.30526 6.43208 6.54726 6.55849 6.67733 6.69602 7.02717 7.60589 7.76404 8.05781 8.74970 9.32359 9.50809 10.97516 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028600 B = 0.004598 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.771809 B = 6087.591821 C = 6241.952415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.067 4.067 3 C -0.142 4.142 4 C -0.033 4.033 5 C -0.121 4.121 6 C -0.126 4.126 7 S -0.155 6.155 8 C -0.104 4.104 9 C 0.248 3.752 10 H 0.065 0.935 11 O -0.556 6.556 12 C -0.572 4.572 13 H 0.056 0.944 14 C 0.082 3.918 15 N -0.856 5.856 16 Si 0.893 3.107 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.034 4.034 21 C -0.125 4.125 22 C -0.141 4.141 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.121 0.879 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.345 0.655 33 H 0.263 0.737 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.047 0.383 -5.488 17.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.067 4.067 3 C -0.161 4.161 4 C -0.035 4.035 5 C -0.178 4.178 6 C -0.237 4.237 7 S 0.079 5.921 8 C -0.252 4.252 9 C 0.188 3.812 10 H 0.083 0.917 11 O -0.358 6.358 12 C -0.611 4.611 13 H 0.075 0.925 14 C -0.125 4.125 15 N -0.491 5.491 16 Si 0.720 3.280 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.036 4.036 21 C -0.182 4.182 22 C -0.161 4.161 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.139 0.861 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.189 0.811 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.766 -0.038 -6.821 17.178 hybrid contribution -1.141 0.193 2.497 2.752 sum -16.907 0.155 -4.324 17.452 Atomic orbital electron populations 1.20800 0.91305 1.02692 1.02222 1.19953 0.95841 0.93177 0.97716 1.20850 0.93317 0.97450 1.04501 1.20243 0.93422 0.95092 0.94760 1.20975 1.01076 0.92780 1.02977 1.21844 0.98887 0.94198 1.08736 1.85618 0.95375 1.96926 1.14143 1.24754 1.05649 1.03767 0.91046 1.19147 0.82216 0.85626 0.94189 0.91693 1.86605 1.71098 1.15283 1.62833 1.21497 0.92362 1.55231 0.92047 0.92530 1.25023 0.96323 0.93645 0.97533 1.70068 0.99647 1.46113 1.33241 0.86672 0.77365 0.78801 0.85173 1.20078 1.21063 1.20088 1.20255 0.93457 0.95081 0.94829 1.21010 1.01310 0.92856 1.03016 1.20849 0.93318 0.97454 1.04484 0.91164 0.91576 0.91574 0.86116 0.90680 0.92054 0.89528 0.90779 0.91393 0.81120 0.92725 0.90859 0.91891 0.89217 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 2 C -0.07 -0.82 5.88 -104.58 -0.62 -1.43 16 3 C -0.14 -1.85 9.35 -39.61 -0.37 -2.22 16 4 C -0.03 -0.49 5.90 -104.41 -0.62 -1.11 16 5 C -0.12 -1.66 9.57 36.01 0.34 -1.32 16 6 C -0.13 -2.10 5.70 -39.04 -0.22 -2.32 16 7 S -0.16 -2.95 17.88 -107.50 -1.92 -4.87 16 8 C -0.10 -2.18 5.50 37.16 0.20 -1.97 16 9 C 0.25 6.23 2.82 -27.88 -0.08 6.15 16 10 H 0.07 1.82 8.14 -51.93 -0.42 1.39 16 11 O -0.56 -14.20 12.49 -35.23 -0.44 -14.64 16 12 C -0.57 -15.45 8.76 -34.44 -0.30 -15.76 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 15 N -0.86 -25.02 12.84 55.43 0.71 -24.31 16 16 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C -0.03 -0.51 5.90 -104.41 -0.62 -1.12 16 21 C -0.13 -1.72 9.57 36.00 0.34 -1.38 16 22 C -0.14 -1.85 9.35 -39.62 -0.37 -2.22 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 25 H 0.07 0.51 8.08 -51.92 -0.42 0.09 16 26 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 29 H 0.09 1.34 6.78 -51.93 -0.35 0.99 16 30 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.07 1.37 8.13 -51.93 -0.42 0.95 16 32 H 0.35 7.80 9.04 45.56 0.41 8.21 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 36 H 0.09 1.35 6.79 -51.93 -0.35 0.99 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 323.73 15.07 4.88 4.88 Total: -1.00 -30.21 323.73 -8.72 -38.93 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.89 Total: 7.32 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -2.03 Total: -23.16 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.71 Total: -24.31 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.44 Total: -14.64 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -1.92 Total: -4.87 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.21 -8.72 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211533683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.079 kcal (2) G-P(sol) polarization free energy of solvation -30.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds