Wall clock time and date at job start Mon Mar 30 2020 06:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38308 * 119.91904 * 2 1 4 4 C 1.38077 * 120.07870 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.04161 * 180.02562 * 4 3 2 6 6 C 1.38974 * 119.91936 * 0.02562 * 4 3 2 7 7 S 1.76209 * 120.07829 * 180.02562 * 6 4 3 8 8 C 1.81400 * 103.00153 * 89.99724 * 7 6 4 9 9 C 1.52999 * 109.46735 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47362 * 304.99284 * 9 8 7 11 11 O 1.42895 * 109.47283 * 65.00148 * 9 8 7 12 12 C 1.50706 * 109.46573 * 184.99941 * 9 8 7 13 13 H 1.07995 * 120.00167 * 359.72054 * 12 9 8 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 9 17 17 H 1.48490 * 109.47405 * 60.00219 * 16 14 12 18 18 H 1.48503 * 109.46845 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47399 * 299.99813 * 16 14 12 20 20 C 1.38976 * 119.84159 * 0.27357 * 6 4 3 21 21 C 1.50698 * 120.04027 * 179.72954 * 20 6 4 22 22 C 1.38085 * 119.91343 * 359.40540 * 20 6 4 23 23 H 1.08999 * 109.47781 * 89.99714 * 1 2 3 24 24 H 1.09004 * 109.47249 * 210.00570 * 1 2 3 25 25 H 1.09009 * 109.46892 * 329.99939 * 1 2 3 26 26 H 1.07997 * 119.96062 * 359.97438 * 3 2 1 27 27 H 1.09007 * 109.47060 * 269.97796 * 5 4 3 28 28 H 1.09000 * 109.47078 * 29.97432 * 5 4 3 29 29 H 1.08997 * 109.47783 * 149.97576 * 5 4 3 30 30 H 1.08994 * 109.47292 * 59.99830 * 8 7 6 31 31 H 1.08998 * 109.46594 * 300.00098 * 8 7 6 32 32 H 0.96695 * 114.00385 * 60.00116 * 11 9 8 33 33 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 34 34 H 1.08994 * 109.47597 * 89.99824 * 21 20 6 35 35 H 1.09000 * 109.46705 * 210.00009 * 21 20 6 36 36 H 1.09005 * 109.47338 * 330.00030 * 21 20 6 37 37 H 1.08002 * 119.95714 * 180.31637 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1988 0.0000 4 6 3.5776 1.2026 0.0005 5 6 4.3284 2.5092 0.0011 6 6 4.2741 0.0000 0.0005 7 16 6.0362 0.0000 0.0019 8 6 6.4430 -0.0007 1.7697 9 6 7.9631 -0.0001 1.9432 10 1 8.3913 -0.8415 1.3984 11 8 8.5004 1.2214 1.4321 12 6 8.3016 -0.1245 3.4064 13 1 7.5116 -0.1922 4.1396 14 6 9.6200 -0.1466 3.8094 15 7 10.5820 -0.0586 2.9170 16 14 10.0397 -0.3015 5.6231 17 1 9.4810 -1.5708 6.1538 18 1 11.5151 -0.3008 5.7915 19 1 9.4567 0.8447 6.3658 20 6 3.5776 -1.2026 -0.0058 21 6 4.3284 -2.5092 -0.0119 22 6 2.1968 -1.1986 0.0004 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8901 0.5139 26 1 1.6549 2.1329 -0.0004 27 1 4.5102 2.8243 -1.0265 28 1 3.7374 3.2677 0.5145 29 1 5.2807 2.3810 0.5156 30 1 6.0237 -0.8908 2.2387 31 1 6.0236 0.8891 2.2393 32 1 8.1628 2.0139 1.8715 33 1 11.5095 -0.0738 3.2007 34 1 4.5090 -2.8294 1.0141 35 1 3.7379 -3.2650 -0.5298 36 1 5.2813 -2.3783 -0.5247 37 1 1.6548 -2.1328 0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211533683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:36 Heat of formation + Delta-G solvation = -67.538410 kcal Electronic energy + Delta-G solvation = -17689.631760 eV Core-core repulsion = 14942.345082 eV Total energy + Delta-G solvation = -2747.286677 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.48323 -37.87585 -34.57182 -34.45569 -34.29535 -31.56145 -28.83540 -27.80477 -27.65964 -27.28432 -23.11616 -21.74150 -21.72676 -19.25103 -18.16897 -17.04617 -16.70487 -16.36101 -16.04382 -15.64309 -15.28799 -15.25935 -14.86186 -14.09326 -14.07215 -13.93394 -13.84203 -13.58060 -13.42973 -13.30611 -13.10070 -12.77720 -12.75139 -12.54886 -12.40051 -12.16336 -11.97213 -11.90661 -11.41469 -10.93337 -10.73660 -10.31132 -9.53765 -9.41559 -8.48542 -8.16560 -6.44872 -0.01804 0.39055 0.95941 1.41167 1.42583 1.51212 1.85695 2.38528 2.68996 3.09064 3.79740 3.87772 3.90139 4.08599 4.22234 4.34171 4.36680 4.38491 4.56602 4.58205 4.66945 4.73087 4.77868 4.83250 4.87644 4.88982 4.97967 5.10138 5.28440 5.34688 5.48618 5.52427 5.56139 5.61161 5.64376 5.97333 6.01874 6.64486 7.28143 7.47806 8.87489 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028600 B = 0.004598 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.771809 B = 6087.591821 C = 6241.952415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.059 4.059 3 C -0.146 4.146 4 C -0.045 4.045 5 C -0.119 4.119 6 C -0.154 4.154 7 S -0.171 6.171 8 C -0.090 4.090 9 C 0.251 3.749 10 H 0.027 0.973 11 O -0.570 6.570 12 C -0.587 4.587 13 H 0.061 0.939 14 C 0.030 3.970 15 N -0.897 5.897 16 Si 0.964 3.036 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.266 1.266 20 C -0.047 4.047 21 C -0.123 4.123 22 C -0.146 4.146 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.148 0.852 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.357 0.643 33 H 0.264 0.736 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.993 0.573 -4.833 20.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.060 4.060 3 C -0.165 4.165 4 C -0.048 4.048 5 C -0.176 4.176 6 C -0.265 4.265 7 S 0.064 5.936 8 C -0.237 4.237 9 C 0.192 3.808 10 H 0.045 0.955 11 O -0.374 6.374 12 C -0.626 4.626 13 H 0.080 0.920 14 C -0.174 4.174 15 N -0.533 5.533 16 Si 0.788 3.212 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.050 4.050 21 C -0.180 4.180 22 C -0.165 4.165 23 H 0.104 0.896 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.165 0.835 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.201 0.799 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.722 0.154 -6.159 19.710 hybrid contribution -0.376 0.143 2.194 2.230 sum -19.098 0.297 -3.965 19.508 Atomic orbital electron populations 1.20885 0.88345 1.04043 1.03557 1.20445 0.97958 0.92456 0.95092 1.21185 0.92431 0.99133 1.03753 1.20474 0.94625 0.94791 0.94911 1.20955 1.00226 0.93113 1.03290 1.21822 0.96643 0.95872 1.12169 1.85553 0.99071 1.97096 1.11914 1.24289 1.02492 1.03662 0.93303 1.18870 0.84685 0.84362 0.92897 0.95514 1.86540 1.71780 1.15906 1.63176 1.21880 0.92794 1.54781 0.93141 0.92048 1.25907 0.96162 0.93081 1.02233 1.70211 0.99995 1.47515 1.35613 0.85551 0.77086 0.79193 0.79397 1.19255 1.20812 1.19065 1.20475 0.94675 0.94763 0.95099 1.20987 1.00810 0.93381 1.02820 1.21180 0.92416 0.99153 1.03778 0.89633 0.90307 0.90253 0.83463 0.90167 0.89737 0.91921 0.91130 0.91004 0.79853 0.92726 0.91300 0.89215 0.91211 0.83539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 71.24 0.71 -0.73 16 2 C -0.06 -1.25 5.88 -19.83 -0.12 -1.37 16 3 C -0.15 -3.38 9.35 22.25 0.21 -3.17 16 4 C -0.05 -1.32 5.90 -19.73 -0.12 -1.43 16 5 C -0.12 -3.17 9.57 71.24 0.68 -2.49 16 6 C -0.15 -5.12 5.70 22.62 0.13 -4.99 16 7 S -0.17 -6.73 17.88 -56.49 -1.01 -7.74 16 8 C -0.09 -3.88 5.50 71.98 0.40 -3.48 16 9 C 0.25 13.15 2.82 29.85 0.08 13.24 16 10 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 11 O -0.57 -30.25 12.49 -148.98 -1.86 -32.11 16 12 C -0.59 -32.35 8.76 25.60 0.22 -32.12 16 13 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 14 C 0.03 1.64 5.40 84.66 0.46 2.10 16 15 N -0.90 -53.78 12.84 21.45 0.28 -53.50 16 16 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 20 C -0.05 -1.39 5.90 -19.72 -0.12 -1.51 16 21 C -0.12 -3.35 9.57 71.24 0.68 -2.67 16 22 C -0.15 -3.42 9.35 22.25 0.21 -3.21 16 23 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.08 0.86 8.08 -2.38 -0.02 0.84 16 25 H 0.08 0.85 8.08 -2.38 -0.02 0.84 16 26 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 27 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.08 1.79 8.09 -2.39 -0.02 1.78 16 29 H 0.06 1.97 6.78 -2.39 -0.02 1.95 16 30 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.07 2.98 8.13 -2.39 -0.02 2.96 16 32 H 0.36 16.67 9.04 -74.06 -0.67 16.00 16 33 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.09 1.89 8.09 -2.39 -0.02 1.87 16 36 H 0.07 2.16 6.79 -2.38 -0.02 2.15 16 37 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -66.37 323.73 3.25 -63.12 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.39 Total: 27.01 kcal Atomic # 6 Polarization: -45.27 SS G_CDS: 3.43 Total: -41.84 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.28 Total: -53.50 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.86 Total: -32.11 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -6.73 SS G_CDS: -1.01 Total: -7.74 kcal Total: -66.37 3.25 -63.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211533683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.418 kcal (2) G-P(sol) polarization free energy of solvation -66.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds