Wall clock time and date at job start Mon Mar 30 2020 06:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.46833 * 2 1 4 4 C 1.46906 * 111.00299 * 75.89183 * 3 2 1 5 5 C 1.50695 * 109.47549 * 195.64083 * 4 3 2 6 6 H 1.08006 * 120.00057 * 355.32161 * 5 4 3 7 7 C 1.37872 * 120.00297 * 175.31679 * 5 4 3 8 8 N 1.31515 * 120.00157 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00203 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47413 * 59.99850 * 9 7 5 11 11 H 1.48503 * 109.47366 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47034 * 299.99852 * 9 7 5 13 13 C 1.39349 * 111.00089 * 199.84279 * 3 2 1 14 14 C 1.39186 * 119.90825 * 296.04807 * 13 3 2 15 15 C 1.37620 * 120.16350 * 179.97438 * 14 13 3 16 16 C 1.39851 * 119.97566 * 0.02562 * 15 14 13 17 17 C 1.43201 * 120.08756 * 179.97438 * 16 15 14 18 18 N 7.38963 * 158.46958 * 308.35616 * 2 1 3 19 19 C 1.40034 * 119.82247 * 0.02562 * 16 15 14 20 20 F 1.35102 * 120.08053 * 180.02562 * 19 16 15 21 21 C 1.38122 * 119.83971 * 359.74062 * 19 16 15 22 22 F 1.35101 * 119.99412 * 180.25383 * 21 19 16 23 23 H 1.08999 * 109.47118 * 302.16852 * 1 2 3 24 24 H 1.08996 * 109.47384 * 62.16667 * 1 2 3 25 25 H 1.09000 * 109.47013 * 182.17753 * 1 2 3 26 26 H 1.08993 * 109.47193 * 240.00608 * 2 1 3 27 27 H 1.09001 * 109.47523 * 119.99835 * 2 1 3 28 28 H 1.09004 * 109.46688 * 315.64435 * 4 3 2 29 29 H 1.08996 * 109.47320 * 75.63557 * 4 3 2 30 30 H 0.96992 * 120.00254 * 179.97438 * 8 7 5 31 31 H 1.08000 * 119.92249 * 359.97438 * 14 13 3 32 32 H 1.08003 * 120.01169 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8799 1.9929 1.3301 5 6 2.0202 3.4889 1.2161 6 1 2.2705 3.9370 0.2657 7 6 1.8290 4.2858 2.3248 8 7 1.5237 3.7404 3.4819 9 14 2.0023 6.1403 2.1832 10 1 1.0188 6.6556 1.1972 11 1 1.7497 6.7637 3.5072 12 1 3.3770 6.4761 1.7329 13 6 3.3397 1.4480 -0.4416 14 6 4.3477 0.8309 0.2936 15 6 5.6532 0.8894 -0.1379 16 6 5.9693 1.5707 -1.3176 17 6 7.3270 1.6335 -1.7686 18 7 8.4040 1.6829 -2.1266 19 6 4.9547 2.1922 -2.0561 20 9 5.2541 2.8513 -3.1968 21 6 3.6463 2.1247 -1.6187 22 9 2.6644 2.7188 -2.3314 23 1 -0.3633 0.5471 0.8699 24 1 -0.3634 0.4798 -0.9087 25 1 -0.3633 -1.0269 0.0390 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.8992 1.7500 1.7393 29 1 2.6553 1.6045 1.9903 30 1 1.3895 4.3010 4.2620 31 1 4.1047 0.3049 1.2050 32 1 6.4333 0.4093 0.4343 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233446840.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:34 Heat of formation + Delta-G solvation = -40.867764 kcal Electronic energy + Delta-G solvation = -19854.060352 eV Core-core repulsion = 16450.549470 eV Total energy + Delta-G solvation = -3403.510881 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.56755 -49.54993 -40.87539 -38.51849 -37.11257 -34.75682 -32.47780 -31.56405 -30.67956 -28.48188 -25.30966 -24.29262 -23.91678 -21.92206 -20.53122 -18.98169 -18.46316 -18.05740 -17.51979 -17.40898 -16.74511 -16.47212 -16.03739 -15.54988 -15.39294 -15.34298 -14.91861 -14.70923 -14.49657 -14.24743 -13.90336 -13.52479 -13.34001 -13.10093 -12.94295 -12.79896 -12.66965 -12.57350 -12.43267 -12.11721 -11.61003 -11.34244 -10.58689 -9.90116 -9.79523 -9.27933 -8.19364 -6.25989 -0.63806 -0.10495 1.38333 1.41588 1.42657 1.50196 1.63704 2.31724 2.41329 2.50916 2.66375 3.08256 3.16737 3.35472 3.75981 3.79607 4.09324 4.30092 4.37800 4.49957 4.72032 4.83932 4.89767 4.93908 5.07762 5.08366 5.24714 5.31236 5.41453 5.51030 5.66644 6.03819 6.23384 6.36904 6.54970 6.86494 7.42440 8.90166 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.015602 B = 0.007375 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.224926 B = 3795.756452 C = 4528.203964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.056 3.944 3 N -0.528 5.528 4 C 0.212 3.788 5 C -0.523 4.523 6 H 0.049 0.951 7 C 0.018 3.982 8 N -0.923 5.923 9 Si 0.946 3.054 10 H -0.276 1.276 11 H -0.280 1.280 12 H -0.272 1.272 13 C 0.146 3.854 14 C -0.130 4.130 15 C -0.013 4.013 16 C -0.052 4.052 17 C 0.282 3.718 18 N -0.436 5.436 19 C 0.110 3.890 20 F -0.128 7.128 21 C 0.064 3.936 22 F -0.129 7.129 23 H 0.038 0.962 24 H 0.051 0.949 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.026 0.974 29 H -0.003 1.003 30 H 0.265 0.735 31 H 0.162 0.838 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 -9.425 -5.672 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 N -0.251 5.251 4 C 0.089 3.911 5 C -0.561 4.561 6 H 0.067 0.933 7 C -0.181 4.181 8 N -0.563 5.563 9 Si 0.772 3.228 10 H -0.201 1.201 11 H -0.205 1.205 12 H -0.197 1.197 13 C 0.049 3.951 14 C -0.150 4.150 15 C -0.034 4.034 16 C -0.056 4.056 17 C -0.033 4.033 18 N -0.112 5.112 19 C 0.087 3.913 20 F -0.107 7.107 21 C 0.043 3.957 22 F -0.107 7.107 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.015 0.985 30 H 0.074 0.926 31 H 0.179 0.821 32 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.502 -8.994 -6.432 12.351 hybrid contribution -0.408 1.240 0.349 1.351 sum 5.094 -7.755 -6.083 11.095 Atomic orbital electron populations 1.21720 0.94379 1.02107 1.01575 1.22215 0.96896 0.86181 1.01661 1.59512 1.15518 1.19580 1.30465 1.19611 0.96227 0.93202 0.82105 1.21344 1.47078 0.92778 0.94918 0.93317 1.25557 0.95010 1.02530 0.95023 1.69990 1.48871 1.36957 1.00503 0.85788 0.78797 0.80939 0.77288 1.20108 1.20531 1.19745 1.19062 0.91776 0.93116 0.91166 1.21831 0.92016 1.00360 1.00785 1.21296 0.97270 0.93471 0.91322 1.15695 0.84037 1.06983 0.98904 1.25112 0.92111 0.93044 0.93010 1.81247 1.12274 1.09244 1.08437 1.17447 0.91358 0.97515 0.85002 1.91521 1.93623 1.78452 1.47070 1.17499 0.83542 1.00888 0.93795 1.91490 1.60844 1.81612 1.76772 0.94304 0.92953 0.89716 0.89646 0.93121 0.95589 0.98543 0.92597 0.82061 0.79441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 10.05 71.98 0.72 -3.19 16 2 C 0.06 1.59 5.25 86.30 0.45 2.04 16 3 N -0.53 -19.74 4.18 -699.37 -2.92 -22.67 16 4 C 0.21 9.73 4.45 85.55 0.38 10.11 16 5 C -0.52 -27.63 8.86 25.60 0.23 -27.40 16 6 H 0.05 2.66 7.73 -2.91 -0.02 2.63 16 7 C 0.02 0.97 5.46 84.65 0.46 1.43 16 8 N -0.92 -51.42 13.29 21.45 0.28 -51.14 16 9 Si 0.95 43.12 29.54 68.60 2.03 45.14 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 C 0.15 4.82 4.02 38.40 0.15 4.98 16 14 C -0.13 -3.28 8.56 22.35 0.19 -3.09 16 15 C -0.01 -0.26 9.74 22.51 0.22 -0.04 16 16 C -0.05 -1.27 5.75 -21.21 -0.12 -1.39 16 17 C 0.28 7.33 14.97 88.33 1.32 8.65 16 18 N -0.44 -12.79 18.54 19.00 0.35 -12.43 16 19 C 0.11 3.29 7.28 22.68 0.17 3.45 16 20 F -0.13 -4.03 16.72 44.97 0.75 -3.28 16 21 C 0.06 2.19 7.30 22.47 0.16 2.35 16 22 F -0.13 -5.00 16.98 44.97 0.76 -4.23 16 23 H 0.04 1.27 6.71 -2.39 -0.02 1.26 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.09 2.05 7.91 -2.39 -0.02 2.03 16 27 H 0.05 1.32 7.92 -2.39 -0.02 1.30 16 28 H 0.03 1.30 6.52 -2.39 -0.02 1.29 16 29 H 0.00 -0.14 6.76 -2.39 -0.02 -0.16 16 30 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.16 3.63 7.33 -2.91 -0.02 3.61 16 32 H 0.19 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -61.65 295.80 6.75 -54.89 By element: Atomic # 1 Polarization: -5.36 SS G_CDS: 1.16 Total: -4.20 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 4.34 Total: -2.08 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -2.29 Total: -86.24 kcal Atomic # 9 Polarization: -9.03 SS G_CDS: 1.52 Total: -7.52 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -61.65 6.75 -54.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233446840.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.025 kcal (2) G-P(sol) polarization free energy of solvation -61.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds