Wall clock time and date at job start Mon Mar 30 2020 06:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09008 * 109.47300 * 2 1 4 4 C 1.50700 * 109.47356 * 240.00094 * 2 1 3 5 5 H 1.08002 * 119.99576 * 239.99656 * 4 2 1 6 6 C 1.37878 * 120.00183 * 59.99846 * 4 2 1 7 7 N 1.31509 * 119.99692 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99775 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47292 * 59.99923 * 8 6 4 10 10 H 1.48499 * 109.46675 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46901 * 299.99772 * 8 6 4 12 12 N 1.46901 * 109.47317 * 119.99625 * 2 1 3 13 13 C 1.46899 * 110.99889 * 299.74551 * 12 2 1 14 14 C 1.39340 * 111.00155 * 175.78780 * 12 2 1 15 15 C 1.39185 * 119.91084 * 61.54743 * 14 12 2 16 16 C 1.37629 * 120.16016 * 180.23085 * 15 14 12 17 17 C 1.39844 * 119.98088 * 359.49446 * 16 15 14 18 18 C 1.43193 * 120.09220 * 180.22897 * 17 16 15 19 19 N 7.38990 * 167.25802 * 136.10898 * 2 1 3 20 20 C 1.40050 * 119.81877 * 0.25688 * 17 16 15 21 21 F 1.35097 * 120.08000 * 179.97438 * 20 17 16 22 22 C 1.38118 * 119.83976 * 359.97438 * 20 17 16 23 23 F 1.35096 * 119.99222 * 180.02562 * 22 20 17 24 24 H 1.09000 * 109.47419 * 185.98495 * 1 2 3 25 25 H 1.08999 * 109.47633 * 305.98817 * 1 2 3 26 26 H 1.08999 * 109.47269 * 65.99360 * 1 2 3 27 27 H 0.97005 * 119.99653 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.47159 * 296.03995 * 13 12 2 29 29 H 1.09000 * 109.47654 * 56.04133 * 13 12 2 30 30 H 1.09007 * 109.47210 * 176.04411 * 13 12 2 31 31 H 1.07994 * 119.92029 * 0.02562 * 15 14 12 32 32 H 1.08003 * 120.00449 * 179.76759 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8260 -2.5202 -4.0076 10 1 1.8271 -0.4200 -5.2204 11 1 3.8065 -1.1209 -4.0080 12 7 2.0196 -0.6924 1.1995 13 6 1.5536 -0.0227 2.4210 14 6 3.4092 -0.7943 1.1849 15 6 4.1896 0.3581 1.1790 16 6 5.5625 0.2635 1.1598 17 6 6.1764 -0.9930 1.1569 18 6 7.6047 -1.0943 1.1419 19 7 8.7378 -1.1746 1.1300 20 6 5.3904 -2.1521 1.1681 21 9 5.9779 -3.3687 1.1648 22 6 4.0132 -2.0485 1.1825 23 9 3.2520 -3.1645 1.1938 24 1 -0.3634 -1.0220 0.1071 25 1 -0.3634 0.6039 0.8315 26 1 -0.3634 0.4181 -0.9388 27 1 0.7087 1.1612 -3.4845 28 1 1.9782 0.9801 2.4702 29 1 0.4657 0.0437 2.4067 30 1 1.8713 -0.5948 3.2928 31 1 3.7167 1.3290 1.1861 32 1 6.1656 1.1594 1.1515 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235419978.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:15 Heat of formation + Delta-G solvation = -18.823446 kcal Electronic energy + Delta-G solvation = -20121.271050 eV Core-core repulsion = 16718.716082 eV Total energy + Delta-G solvation = -3402.554968 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.24662 -48.16798 -39.59043 -37.23064 -35.85331 -33.07593 -30.58398 -30.29147 -28.78720 -26.34165 -24.65899 -23.00779 -22.66578 -20.03740 -19.25696 -17.55780 -17.05733 -16.29625 -16.13830 -16.03051 -15.29678 -14.86401 -14.54907 -14.07076 -13.92063 -13.85160 -13.67887 -13.38308 -13.20177 -12.64733 -12.42183 -12.07746 -11.91305 -11.80314 -11.47403 -11.13382 -10.85757 -10.82693 -10.51542 -10.42549 -10.09705 -9.18058 -8.65314 -8.62203 -8.43613 -7.77722 -6.17317 -4.23258 0.61206 1.12812 2.58704 2.86905 3.26403 3.30355 3.35026 3.57420 3.72186 3.91391 4.28379 4.47356 4.63982 4.92440 5.02034 5.16173 5.40108 5.60117 5.74486 5.79265 5.97454 6.12847 6.20747 6.31756 6.60335 6.66527 6.82930 6.86804 7.17010 7.42212 7.48032 7.64140 7.93277 8.06018 8.26340 8.80877 9.43149 10.88484 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.007746 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.255159 B = 3613.926131 C = 4211.876979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.218 3.782 3 H 0.012 0.988 4 C -0.512 4.512 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.515 5.515 13 C 0.028 3.972 14 C 0.176 3.824 15 C -0.131 4.131 16 C -0.041 4.041 17 C -0.064 4.064 18 C 0.266 3.734 19 N -0.417 5.417 20 C 0.112 3.888 21 F -0.123 7.123 22 C 0.084 3.916 23 F -0.111 7.111 24 H 0.037 0.963 25 H 0.012 0.988 26 H 0.093 0.907 27 H 0.264 0.736 28 H 0.026 0.974 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.146 0.854 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.521 0.543 8.645 9.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.115 3.885 3 H 0.029 0.971 4 C -0.551 4.551 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.527 5.527 8 Si 0.720 3.280 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.238 5.238 13 C -0.119 4.119 14 C 0.079 3.921 15 C -0.151 4.151 16 C -0.062 4.062 17 C -0.069 4.069 18 C -0.049 4.049 19 N -0.093 5.093 20 C 0.089 3.911 21 F -0.101 7.101 22 C 0.063 3.937 23 F -0.089 7.089 24 H 0.056 0.944 25 H 0.031 0.969 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.163 0.837 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.938 -0.022 8.467 9.802 hybrid contribution 0.057 -0.111 -1.035 1.043 sum 4.995 -0.133 7.432 8.955 Atomic orbital electron populations 1.21880 0.96814 0.99328 1.01417 1.19478 0.92922 0.91919 0.84172 0.97060 1.21038 1.31648 1.12658 0.89717 0.92127 1.24841 0.94829 0.94884 0.98975 1.69845 1.36219 1.22694 1.23946 0.86616 0.79382 0.80014 0.81939 1.19967 1.21142 1.20072 1.59792 1.03752 1.55191 1.05015 1.22437 1.01906 0.96125 0.91393 1.18801 0.91684 0.90041 0.91565 1.21608 0.93081 0.99767 1.00676 1.20886 0.94685 0.94992 0.95672 1.15654 0.84567 0.93153 1.13507 1.25222 0.92168 0.93957 0.93547 1.81207 1.11779 1.06865 1.09412 1.17380 0.89161 0.80052 1.04545 1.91531 1.83988 1.40941 1.93665 1.17264 0.85734 0.83887 1.06863 1.91539 1.74888 1.48868 1.93648 0.94364 0.96901 0.88883 0.92619 0.95520 0.90272 0.92350 0.83654 0.83829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.63 37.15 0.32 -2.66 16 2 C 0.22 4.86 1.78 -68.87 -0.12 4.73 16 3 H 0.01 0.28 7.33 -51.92 -0.38 -0.10 16 4 C -0.51 -12.96 8.04 -34.44 -0.28 -13.24 16 5 H 0.06 1.58 6.85 -52.49 -0.36 1.22 16 6 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 7 N -0.89 -23.45 11.29 55.43 0.63 -22.83 16 8 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.52 -9.78 4.42 -172.60 -0.76 -10.54 16 13 C 0.03 0.42 9.08 60.06 0.55 0.96 16 14 C 0.18 3.08 3.49 -83.74 -0.29 2.79 16 15 C -0.13 -1.91 8.57 -39.45 -0.34 -2.25 16 16 C -0.04 -0.51 9.74 -39.20 -0.38 -0.90 16 17 C -0.06 -0.91 5.75 -106.69 -0.61 -1.52 16 18 C 0.27 3.93 14.97 -22.47 -0.34 3.60 16 19 N -0.42 -6.75 18.54 41.84 0.78 -5.97 16 20 C 0.11 1.79 7.28 -38.95 -0.28 1.51 16 21 F -0.12 -2.02 16.72 2.25 0.04 -1.98 16 22 C 0.08 1.48 6.83 -39.27 -0.27 1.22 16 23 F -0.11 -2.14 16.98 2.25 0.04 -2.10 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.01 0.23 6.65 -51.93 -0.35 -0.11 16 26 H 0.09 2.27 5.93 -51.93 -0.31 1.97 16 27 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.03 0.36 7.23 -51.93 -0.38 -0.02 16 29 H 0.08 1.17 6.24 -51.93 -0.32 0.84 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.15 1.97 7.02 -52.49 -0.37 1.60 16 32 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 288.17 15.07 4.34 4.34 Total: -1.00 -27.23 288.17 -4.97 -32.20 By element: Atomic # 1 Polarization: -1.69 SS G_CDS: -2.86 Total: -4.55 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -2.14 Total: -4.12 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.64 Total: -39.34 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.08 Total: -4.08 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.23 -4.97 -32.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235419978.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.375 kcal (2) G-P(sol) polarization free energy of solvation -27.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds