Wall clock time and date at job start Mon Mar 30 2020 06:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09008 * 109.47300 * 2 1 4 4 C 1.50700 * 109.47356 * 240.00094 * 2 1 3 5 5 H 1.08002 * 119.99576 * 239.99656 * 4 2 1 6 6 C 1.37878 * 120.00183 * 59.99846 * 4 2 1 7 7 N 1.31509 * 119.99692 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99775 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47292 * 59.99923 * 8 6 4 10 10 H 1.48499 * 109.46675 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46901 * 299.99772 * 8 6 4 12 12 N 1.46901 * 109.47317 * 119.99625 * 2 1 3 13 13 C 1.46899 * 110.99889 * 299.74551 * 12 2 1 14 14 C 1.39340 * 111.00155 * 175.78780 * 12 2 1 15 15 C 1.39185 * 119.91084 * 61.54743 * 14 12 2 16 16 C 1.37629 * 120.16016 * 180.23085 * 15 14 12 17 17 C 1.39844 * 119.98088 * 359.49446 * 16 15 14 18 18 C 1.43193 * 120.09220 * 180.22897 * 17 16 15 19 19 N 7.38990 * 167.25802 * 136.10898 * 2 1 3 20 20 C 1.40050 * 119.81877 * 0.25688 * 17 16 15 21 21 F 1.35097 * 120.08000 * 179.97438 * 20 17 16 22 22 C 1.38118 * 119.83976 * 359.97438 * 20 17 16 23 23 F 1.35096 * 119.99222 * 180.02562 * 22 20 17 24 24 H 1.09000 * 109.47419 * 185.98495 * 1 2 3 25 25 H 1.08999 * 109.47633 * 305.98817 * 1 2 3 26 26 H 1.08999 * 109.47269 * 65.99360 * 1 2 3 27 27 H 0.97005 * 119.99653 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.47159 * 296.03995 * 13 12 2 29 29 H 1.09000 * 109.47654 * 56.04133 * 13 12 2 30 30 H 1.09007 * 109.47210 * 176.04411 * 13 12 2 31 31 H 1.07994 * 119.92029 * 0.02562 * 15 14 12 32 32 H 1.08003 * 120.00449 * 179.76759 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8260 -2.5202 -4.0076 10 1 1.8271 -0.4200 -5.2204 11 1 3.8065 -1.1209 -4.0080 12 7 2.0196 -0.6924 1.1995 13 6 1.5536 -0.0227 2.4210 14 6 3.4092 -0.7943 1.1849 15 6 4.1896 0.3581 1.1790 16 6 5.5625 0.2635 1.1598 17 6 6.1764 -0.9930 1.1569 18 6 7.6047 -1.0943 1.1419 19 7 8.7378 -1.1746 1.1300 20 6 5.3904 -2.1521 1.1681 21 9 5.9779 -3.3687 1.1648 22 6 4.0132 -2.0485 1.1825 23 9 3.2520 -3.1645 1.1938 24 1 -0.3634 -1.0220 0.1071 25 1 -0.3634 0.6039 0.8315 26 1 -0.3634 0.4181 -0.9388 27 1 0.7087 1.1612 -3.4845 28 1 1.9782 0.9801 2.4702 29 1 0.4657 0.0437 2.4067 30 1 1.8713 -0.5948 3.2928 31 1 3.7167 1.3290 1.1861 32 1 6.1656 1.1594 1.1515 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235419978.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:15 Heat of formation + Delta-G solvation = -33.347220 kcal Electronic energy + Delta-G solvation = -20121.900848 eV Core-core repulsion = 16718.716082 eV Total energy + Delta-G solvation = -3403.184766 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.55509 -49.53538 -40.87672 -38.56128 -37.16530 -34.88067 -32.02574 -31.51906 -30.31184 -27.85242 -26.30790 -24.39319 -23.87915 -21.61840 -20.51385 -18.98332 -18.40667 -17.93766 -17.53547 -17.37103 -16.82571 -16.23716 -16.02840 -15.48283 -15.37786 -15.26396 -14.91035 -14.74626 -14.46421 -14.05464 -13.78331 -13.59478 -13.11659 -13.07600 -12.95870 -12.72786 -12.63737 -12.45310 -12.22967 -12.15581 -11.82600 -10.97575 -10.52184 -9.86894 -9.74111 -9.22597 -8.11829 -6.21589 -0.60344 -0.07696 1.38784 1.41690 1.44337 1.50282 1.65879 2.33855 2.42638 2.53626 2.69221 3.14333 3.20320 3.37873 3.79671 3.82585 4.16690 4.41183 4.59728 4.66235 4.81754 4.89718 4.97604 5.02135 5.10443 5.15275 5.19006 5.45358 5.49860 5.70089 5.81800 6.23795 6.27493 6.37465 6.60814 6.89725 7.47174 8.92537 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.007746 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.255159 B = 3613.926131 C = 4211.876979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.226 3.774 3 H 0.001 0.999 4 C -0.520 4.520 5 H 0.046 0.954 6 C 0.029 3.971 7 N -0.908 5.908 8 Si 0.936 3.064 9 H -0.280 1.280 10 H -0.281 1.281 11 H -0.273 1.273 12 N -0.531 5.531 13 C 0.027 3.973 14 C 0.157 3.843 15 C -0.128 4.128 16 C -0.014 4.014 17 C -0.056 4.056 18 C 0.283 3.717 19 N -0.438 5.438 20 C 0.109 3.891 21 F -0.129 7.129 22 C 0.061 3.939 23 F -0.129 7.129 24 H 0.028 0.972 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.263 0.737 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.474 1.621 9.318 10.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.121 3.879 3 H 0.018 0.982 4 C -0.558 4.558 5 H 0.064 0.936 6 C -0.171 4.171 7 N -0.547 5.547 8 Si 0.763 3.237 9 H -0.206 1.206 10 H -0.207 1.207 11 H -0.199 1.199 12 N -0.253 5.253 13 C -0.119 4.119 14 C 0.060 3.940 15 C -0.148 4.148 16 C -0.035 4.035 17 C -0.060 4.060 18 C -0.032 4.032 19 N -0.114 5.114 20 C 0.085 3.915 21 F -0.107 7.107 22 C 0.040 3.960 23 F -0.108 7.108 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.178 0.822 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.899 1.052 9.157 10.943 hybrid contribution -0.201 -0.454 -1.178 1.278 sum 5.698 0.598 7.979 9.823 Atomic orbital electron populations 1.21723 0.96823 0.98973 1.01100 1.19199 0.92831 0.91079 0.84746 0.98196 1.21263 1.31193 1.12148 0.91200 0.93572 1.25369 0.95261 0.95531 1.00916 1.69929 1.37060 1.23558 1.24171 0.85943 0.78944 0.78860 0.79966 1.20565 1.20653 1.19863 1.59566 1.05094 1.55577 1.05112 1.22531 1.01964 0.97141 0.90264 1.18956 0.91321 0.90804 0.92921 1.21772 0.93738 0.99303 1.00024 1.21277 0.94134 0.95654 0.92443 1.15686 0.84095 0.93174 1.13059 1.25131 0.91958 0.93277 0.92865 1.81239 1.12444 1.07540 1.10131 1.17453 0.88804 0.80385 1.04822 1.91513 1.83946 1.41523 1.93764 1.17487 0.86279 0.83651 1.08590 1.91482 1.75448 1.49790 1.94039 0.95312 0.94117 0.91562 0.92736 0.93721 0.90297 0.90559 0.82231 0.79658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.55 8.63 71.98 0.62 -4.92 16 2 C 0.23 9.90 1.78 44.17 0.08 9.97 16 3 H 0.00 0.02 7.33 -2.38 -0.02 0.01 16 4 C -0.52 -26.25 8.04 25.60 0.21 -26.04 16 5 H 0.05 2.43 6.85 -2.91 -0.02 2.41 16 6 C 0.03 1.51 5.29 84.66 0.45 1.96 16 7 N -0.91 -47.86 11.29 21.45 0.24 -47.61 16 8 Si 0.94 42.02 29.54 68.60 2.03 44.05 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 N -0.53 -19.58 4.42 -699.99 -3.09 -22.68 16 13 C 0.03 0.74 9.08 127.69 1.16 1.90 16 14 C 0.16 5.26 3.49 38.41 0.13 5.40 16 15 C -0.13 -3.38 8.57 22.35 0.19 -3.19 16 16 C -0.01 -0.31 9.74 22.51 0.22 -0.09 16 17 C -0.06 -1.43 5.75 -21.21 -0.12 -1.56 16 18 C 0.28 7.65 14.97 88.33 1.32 8.98 16 19 N -0.44 -13.25 18.54 19.00 0.35 -12.90 16 20 C 0.11 3.35 7.28 22.68 0.17 3.52 16 21 F -0.13 -4.17 16.72 44.97 0.75 -3.42 16 22 C 0.06 2.13 6.83 22.47 0.15 2.29 16 23 F -0.13 -5.04 16.98 44.97 0.76 -4.28 16 24 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.04 1.48 6.65 -2.39 -0.02 1.47 16 26 H 0.07 3.24 5.93 -2.39 -0.01 3.23 16 27 H 0.26 13.39 8.31 -92.70 -0.77 12.62 16 28 H 0.04 1.08 7.23 -2.39 -0.02 1.06 16 29 H 0.08 2.17 6.24 -2.39 -0.01 2.15 16 30 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.16 3.78 7.02 -2.91 -0.02 3.76 16 32 H 0.19 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -58.19 288.17 6.79 -51.40 By element: Atomic # 1 Polarization: -3.95 SS G_CDS: 1.17 Total: -2.78 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 4.58 Total: -1.78 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -2.50 Total: -83.19 kcal Atomic # 9 Polarization: -9.21 SS G_CDS: 1.52 Total: -7.70 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -58.19 6.79 -51.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235419978.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.052 kcal (2) G-P(sol) polarization free energy of solvation -58.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds