Wall clock time and date at job start Mon Mar 30 2020 07:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47239 * 2 1 4 4 S 1.81406 * 109.47092 * 119.99902 * 2 1 3 5 5 C 1.81400 * 102.99850 * 294.99882 * 4 2 1 6 6 H 1.09001 * 109.47003 * 304.99893 * 5 4 2 7 7 C 1.50693 * 109.47354 * 65.00074 * 5 4 2 8 8 H 1.07999 * 119.99774 * 234.27900 * 7 5 4 9 9 C 1.37876 * 120.00225 * 54.27227 * 7 5 4 10 10 N 1.31511 * 119.99770 * 349.11071 * 9 7 5 11 11 Si 1.86804 * 120.00123 * 169.10602 * 9 7 5 12 12 H 1.48493 * 109.46931 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.46764 * 120.00301 * 11 9 7 14 14 H 1.48506 * 109.46884 * 240.00175 * 11 9 7 15 15 C 1.50700 * 109.46852 * 185.00365 * 5 4 2 16 16 C 1.38235 * 119.99857 * 326.85659 * 15 5 4 17 17 C 1.38237 * 119.99854 * 180.02562 * 16 15 5 18 18 C 1.38231 * 119.99970 * 0.06805 * 17 16 15 19 19 C 1.38227 * 120.00242 * 359.97438 * 18 17 16 20 20 C 1.38237 * 120.00107 * 146.99629 * 15 5 4 21 21 C 1.52998 * 109.46878 * 239.99829 * 2 1 3 22 22 H 1.09003 * 109.47169 * 184.99927 * 21 2 1 23 23 C 1.53003 * 109.47378 * 65.00330 * 21 2 1 24 24 O 1.42895 * 109.47350 * 304.99948 * 21 2 1 25 25 H 1.09002 * 109.46554 * 300.00375 * 1 2 3 26 26 H 1.08999 * 109.47397 * 59.99824 * 1 2 3 27 27 H 1.08999 * 109.47579 * 180.02562 * 1 2 3 28 28 H 0.97003 * 120.00002 * 179.97438 * 10 9 7 29 29 H 1.08003 * 120.00316 * 0.11330 * 16 15 5 30 30 H 1.07998 * 119.99990 * 180.34551 * 17 16 15 31 31 H 1.08003 * 119.99823 * 179.97438 * 18 17 16 32 32 H 1.07994 * 120.00150 * 179.97438 * 19 18 17 33 33 H 1.07994 * 119.99755 * 359.97223 * 20 15 5 34 34 H 1.08997 * 109.46980 * 59.99541 * 23 21 2 35 35 H 1.08999 * 109.47147 * 179.97438 * 23 21 2 36 36 H 1.09003 * 109.46642 * 299.99920 * 23 21 2 37 37 H 0.96698 * 114.00047 * 59.99877 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1347 -0.8551 1.4812 5 6 1.5664 0.2154 2.8309 6 1 1.9277 1.2305 2.6662 7 6 0.0600 0.2184 2.8695 8 1 -0.4792 1.1535 2.8347 9 6 -0.6300 -0.9727 2.9491 10 7 0.0033 -2.1123 2.7765 11 14 -2.4643 -0.9677 3.3023 12 1 -2.9352 0.4323 3.4548 13 1 -3.1868 -1.6127 2.1767 14 1 -2.7291 -1.7188 4.5557 15 6 2.1015 -0.3017 4.1414 16 6 2.2723 -1.6604 4.3303 17 6 2.7627 -2.1348 5.5326 18 6 3.0809 -1.2506 6.5463 19 6 2.9093 0.1079 6.3577 20 6 2.4189 0.5824 5.1555 21 6 2.0399 -0.7213 -1.2492 22 1 3.1263 -0.7995 -1.2056 23 6 1.6352 0.0689 -2.4954 24 8 1.4701 -2.0304 -1.3094 25 1 -0.3632 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.4820 -2.9502 2.8329 29 1 2.0240 -2.3513 3.5381 30 1 2.9014 -3.1959 5.6782 31 1 3.4636 -1.6213 7.4858 32 1 3.1576 0.7987 7.1499 33 1 2.2838 1.6437 5.0085 34 1 2.0698 1.0674 -2.4494 35 1 1.9989 -0.4448 -3.3853 36 1 0.5489 0.1471 -2.5390 37 1 0.5041 -2.0373 -1.3503 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235556224.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:12 Heat of formation + Delta-G solvation = -42.246604 kcal Electronic energy + Delta-G solvation = -18634.004540 eV Core-core repulsion = 15887.814598 eV Total energy + Delta-G solvation = -2746.189942 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.78575 -38.90151 -35.71670 -33.58451 -32.64173 -31.41031 -30.25356 -28.78926 -25.66714 -25.04521 -23.11771 -22.08978 -21.31558 -18.48208 -17.99576 -17.12128 -16.87451 -16.45533 -16.22422 -15.74268 -15.64280 -15.12009 -14.74455 -14.29525 -13.94791 -13.82969 -13.55612 -13.28795 -13.02501 -12.78188 -12.74501 -12.60333 -12.44527 -12.32795 -11.93506 -11.83648 -11.66142 -11.39573 -11.36408 -10.86894 -10.35719 -9.93774 -9.48881 -9.17722 -8.39108 -7.11815 -6.08974 0.75172 0.87796 1.37827 1.46071 1.50729 1.62186 2.42147 2.51618 3.28634 3.33788 3.59915 3.98522 4.19738 4.28270 4.33351 4.33615 4.45394 4.48162 4.64919 4.67927 4.82058 4.89699 4.96686 5.00495 5.13510 5.15653 5.26133 5.34866 5.40253 5.57198 5.68795 5.82425 5.86596 5.99742 6.08555 6.26322 6.47537 6.72997 6.86680 7.45230 8.93998 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017983 B = 0.008481 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.617698 B = 3300.545707 C = 4160.430416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 H 0.069 0.931 4 S -0.291 6.291 5 C 0.122 3.878 6 H 0.032 0.968 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.058 3.942 10 N -0.812 5.812 11 Si 0.920 3.080 12 H -0.273 1.273 13 H -0.279 1.279 14 H -0.290 1.290 15 C -0.045 4.045 16 C -0.108 4.108 17 C -0.148 4.148 18 C -0.145 4.145 19 C -0.132 4.132 20 C -0.142 4.142 21 C 0.125 3.875 22 H 0.086 0.914 23 C -0.169 4.169 24 O -0.568 6.568 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.043 0.957 28 H 0.255 0.745 29 H 0.135 0.865 30 H 0.121 0.879 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.617 3.400 -2.437 4.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.200 4.200 3 H 0.087 0.913 4 S -0.058 6.058 5 C -0.005 4.005 6 H 0.050 0.950 7 C -0.565 4.565 8 H 0.071 0.929 9 C -0.152 4.152 10 N -0.445 5.445 11 Si 0.747 3.253 12 H -0.198 1.198 13 H -0.204 1.204 14 H -0.216 1.216 15 C -0.048 4.048 16 C -0.128 4.128 17 C -0.166 4.166 18 C -0.162 4.162 19 C -0.150 4.150 20 C -0.161 4.161 21 C 0.065 3.935 22 H 0.104 0.896 23 C -0.228 4.228 24 O -0.375 6.375 25 H 0.099 0.901 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.152 0.848 30 H 0.139 0.861 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.135 0.865 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 3.864 2.050 -2.415 4.997 hybrid contribution -2.488 1.171 0.244 2.761 sum 1.376 3.222 -2.171 4.121 Atomic orbital electron populations 1.22217 0.93529 1.01883 1.02888 1.23532 0.99894 1.00423 0.96176 0.91251 1.86306 1.71504 1.45536 1.02455 1.19632 0.97224 0.93607 0.90019 0.94998 1.20862 0.89567 0.92822 1.53230 0.92919 1.25210 0.99888 0.95433 0.94638 1.70415 1.35478 0.97344 1.41234 0.86104 0.83482 0.77971 0.77725 1.19803 1.20437 1.21630 1.20020 0.94454 0.94036 0.96267 1.21660 0.96480 0.96225 0.98387 1.21378 1.00974 0.99940 0.94278 1.21252 1.02217 0.93473 0.99307 1.21224 1.00685 0.96055 0.97022 1.21091 1.01573 0.99269 0.94209 1.21664 0.97411 0.82521 0.91908 0.89559 1.22431 1.02719 1.00848 0.96813 1.86530 1.25861 1.28437 1.96712 0.90116 0.92446 0.93786 0.93458 0.84781 0.86083 0.84210 0.84029 0.86498 0.90614 0.90939 0.91457 0.77429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.58 7.59 71.98 0.55 -5.03 16 2 C -0.07 -2.69 2.67 30.59 0.08 -2.61 16 3 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 4 S -0.29 -13.55 16.74 -56.49 -0.95 -14.49 16 5 C 0.12 5.84 2.75 29.10 0.08 5.92 16 6 H 0.03 1.50 8.07 -2.39 -0.02 1.49 16 7 C -0.52 -26.08 5.42 25.60 0.14 -25.95 16 8 H 0.05 2.66 7.71 -2.91 -0.02 2.64 16 9 C 0.06 2.89 4.43 84.65 0.37 3.27 16 10 N -0.81 -41.50 8.53 21.45 0.18 -41.32 16 11 Si 0.92 40.61 29.55 68.60 2.03 42.64 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 14 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 15 C -0.05 -2.12 4.75 -19.87 -0.09 -2.21 16 16 C -0.11 -5.08 7.94 22.27 0.18 -4.90 16 17 C -0.15 -5.87 10.05 22.27 0.22 -5.65 16 18 C -0.14 -4.97 10.05 22.27 0.22 -4.75 16 19 C -0.13 -4.57 10.05 22.27 0.22 -4.34 16 20 C -0.14 -5.77 9.69 22.27 0.22 -5.55 16 21 C 0.13 4.10 3.33 30.59 0.10 4.20 16 22 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 23 C -0.17 -4.09 9.29 71.98 0.67 -3.42 16 24 O -0.57 -20.71 12.99 -148.98 -1.94 -22.65 16 25 H 0.08 3.52 4.58 -2.39 -0.01 3.50 16 26 H 0.06 1.78 6.57 -2.39 -0.02 1.76 16 27 H 0.04 1.79 6.72 -2.39 -0.02 1.77 16 28 H 0.25 12.80 8.31 -92.71 -0.77 12.03 16 29 H 0.13 6.96 5.15 -2.91 -0.01 6.95 16 30 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 31 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 32 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 33 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.55 6.57 -2.39 -0.02 1.53 16 37 H 0.38 12.29 7.19 -74.06 -0.53 11.76 16 Total: -1.00 -56.56 302.77 2.82 -53.74 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 0.53 Total: 33.13 kcal Atomic # 6 Polarization: -54.00 SS G_CDS: 2.96 Total: -51.04 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.18 Total: -41.32 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -1.94 Total: -22.65 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: -13.55 SS G_CDS: -0.95 Total: -14.49 kcal Total: -56.56 2.82 -53.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235556224.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.492 kcal (2) G-P(sol) polarization free energy of solvation -56.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds