Wall clock time and date at job start Mon Mar 30 2020 07:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47054 * 2 1 4 4 O 1.42900 * 109.47031 * 240.00065 * 2 1 3 5 5 C 1.53005 * 109.47002 * 120.00205 * 2 1 3 6 6 H 1.08999 * 109.47035 * 299.99833 * 5 2 1 7 7 C 1.53000 * 109.46648 * 180.02562 * 5 2 1 8 8 S 1.81394 * 109.47357 * 60.00037 * 5 2 1 9 9 C 1.81395 * 103.00161 * 184.99818 * 8 5 2 10 10 H 1.09001 * 109.47151 * 305.00403 * 9 8 5 11 11 C 1.50703 * 109.47101 * 64.99849 * 9 8 5 12 12 H 1.08002 * 119.99795 * 25.68171 * 11 9 8 13 13 C 1.37875 * 120.00157 * 205.68327 * 11 9 8 14 14 N 1.31511 * 120.00197 * 356.99610 * 13 11 9 15 15 Si 1.86796 * 119.99995 * 176.99622 * 13 11 9 16 16 H 1.48500 * 109.47111 * 269.99915 * 15 13 11 17 17 H 1.48505 * 109.47486 * 30.00047 * 15 13 11 18 18 H 1.48497 * 109.47379 * 149.99815 * 15 13 11 19 19 C 1.50699 * 109.47451 * 184.99977 * 9 8 5 20 20 C 1.38236 * 119.99664 * 301.60819 * 19 9 8 21 21 C 1.38235 * 119.99792 * 179.80789 * 20 19 9 22 22 C 1.38237 * 119.99868 * 0.39880 * 21 20 19 23 23 C 1.38229 * 120.00191 * 359.85851 * 22 21 20 24 24 C 1.38233 * 120.00070 * 121.88405 * 19 9 8 25 25 H 1.08999 * 109.47089 * 299.99995 * 1 2 3 26 26 H 1.08997 * 109.47212 * 60.00328 * 1 2 3 27 27 H 1.09004 * 109.47054 * 179.97438 * 1 2 3 28 28 H 0.96698 * 114.00239 * 299.99751 * 4 2 1 29 29 H 1.09007 * 109.47256 * 179.97438 * 7 5 2 30 30 H 1.08999 * 109.47172 * 299.99634 * 7 5 2 31 31 H 1.08997 * 109.47527 * 60.00221 * 7 5 2 32 32 H 0.97004 * 119.99646 * 356.05538 * 14 13 11 33 33 H 1.08000 * 120.00151 * 359.97438 * 20 19 9 34 34 H 1.08002 * 120.00512 * 180.23012 * 21 20 19 35 35 H 1.07998 * 120.00046 * 179.83137 * 22 21 20 36 36 H 1.08000 * 120.00749 * 179.97438 * 23 22 21 37 37 H 1.08000 * 120.00044 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2493 6 1 1.6767 -0.2075 2.1392 7 6 3.5700 -0.7207 1.2495 8 16 1.4354 -2.4315 1.2492 9 6 2.0036 -3.0653 2.8511 10 1 3.0810 -2.9237 2.9364 11 6 1.3095 -2.3192 3.9614 12 1 0.3449 -1.8660 3.7867 13 6 1.9060 -2.2151 5.2000 14 7 3.0526 -2.8165 5.4304 15 14 1.0855 -1.2197 6.5511 16 1 1.5537 0.1879 6.4828 17 1 -0.3880 -1.2606 6.3708 18 1 1.4384 -1.7952 7.8738 19 6 1.6803 -4.5336 2.9538 20 6 0.3711 -4.9626 2.8395 21 6 0.0750 -6.3098 2.9298 22 6 1.0869 -7.2272 3.1426 23 6 2.3953 -6.7977 3.2622 24 6 2.6920 -5.4508 3.1680 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7210 -1.5952 -1.2329 29 1 3.9334 -1.2342 2.1397 30 1 3.9337 -1.2343 0.3595 31 1 3.9330 0.3070 1.2498 32 1 3.4504 -3.3799 4.7482 33 1 -0.4199 -4.2455 2.6770 34 1 -0.9474 -6.6455 2.8368 35 1 0.8552 -8.2795 3.2158 36 1 3.1860 -7.5143 3.4288 37 1 3.7143 -5.1152 3.2614 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235593126.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:15 Heat of formation + Delta-G solvation = -51.078382 kcal Electronic energy + Delta-G solvation = -18319.178165 eV Core-core repulsion = 15572.605248 eV Total energy + Delta-G solvation = -2746.572917 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.50329 -37.61350 -34.17549 -32.47370 -30.95242 -30.19073 -29.60167 -26.91733 -23.60213 -23.30667 -21.79903 -21.24597 -20.49006 -17.19799 -16.56541 -15.96567 -15.85563 -14.95845 -14.67494 -14.14130 -13.93559 -13.83343 -13.30957 -13.04193 -12.85631 -12.58417 -12.37117 -12.19942 -11.79505 -11.53080 -11.43960 -11.32425 -10.94747 -10.65297 -10.53282 -10.39670 -10.26061 -10.17360 -9.70901 -9.21417 -8.91991 -8.67780 -8.20933 -7.77991 -6.93257 -6.43871 -4.35472 1.98903 2.12309 2.75361 3.30001 3.33505 3.49136 3.59261 4.32750 4.61358 4.67967 5.07227 5.15161 5.24778 5.48597 5.53156 5.56691 5.69860 5.75476 5.85351 5.94221 6.00675 6.16179 6.19745 6.23930 6.28460 6.40631 6.48540 6.53232 6.67006 6.71459 6.83682 7.14423 7.19608 7.47958 7.65357 7.79056 7.88360 8.18452 8.55340 9.32685 10.75506 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.013665 B = 0.008910 C = 0.006427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.589747 B = 3141.799131 C = 4355.479028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.124 3.876 3 H 0.099 0.901 4 O -0.563 6.563 5 C -0.076 4.076 6 H 0.097 0.903 7 C -0.136 4.136 8 S -0.314 6.314 9 C 0.125 3.875 10 H 0.055 0.945 11 C -0.584 4.584 12 H 0.065 0.935 13 C 0.030 3.970 14 N -0.893 5.893 15 Si 1.068 2.932 16 H -0.286 1.286 17 H -0.285 1.285 18 H -0.283 1.283 19 C -0.024 4.024 20 C -0.097 4.097 21 C -0.129 4.129 22 C -0.145 4.145 23 C -0.124 4.124 24 C -0.119 4.119 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.378 0.622 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.273 0.727 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 -0.149 -6.610 7.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.064 3.936 3 H 0.117 0.883 4 O -0.370 6.370 5 C -0.205 4.205 6 H 0.116 0.884 7 C -0.195 4.195 8 S -0.081 6.081 9 C -0.002 4.002 10 H 0.073 0.927 11 C -0.624 4.624 12 H 0.083 0.917 13 C -0.178 4.178 14 N -0.527 5.527 15 Si 0.896 3.104 16 H -0.212 1.212 17 H -0.211 1.211 18 H -0.208 1.208 19 C -0.027 4.027 20 C -0.117 4.117 21 C -0.147 4.147 22 C -0.164 4.164 23 C -0.142 4.142 24 C -0.139 4.139 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.226 0.774 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.902 0.474 -6.014 6.695 hybrid contribution 0.191 -0.526 -0.160 0.582 sum -2.711 -0.052 -6.175 6.744 Atomic orbital electron populations 1.22527 0.96137 1.03730 1.01866 1.21692 0.93151 0.95483 0.83269 0.88328 1.86446 1.77447 1.29541 1.43582 1.23636 0.98867 0.96183 1.01824 0.88431 1.21902 0.93727 1.01324 1.02574 1.85713 1.78167 1.12496 1.31744 1.19862 0.99244 0.90345 0.90765 0.92665 1.22034 1.07582 1.36271 0.96481 0.91709 1.25914 0.95467 0.97259 0.99169 1.70769 1.16664 1.27686 1.37567 0.83534 0.75311 0.75844 0.75741 1.21207 1.21092 1.20819 1.20124 0.93031 0.95214 0.94284 1.20933 0.96570 0.94869 0.99296 1.21014 0.98394 0.93622 1.01716 1.20872 0.93286 0.98627 1.03571 1.20940 0.96252 0.95543 1.01486 1.20958 0.98811 0.92735 1.01353 0.91568 0.92588 0.90769 0.77359 0.92185 0.91841 0.92994 0.91509 0.86277 0.87162 0.87303 0.87129 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 9.30 37.16 0.35 -2.26 16 2 C 0.12 1.89 3.38 -26.73 -0.09 1.80 16 3 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 4 O -0.56 -8.89 12.65 -35.23 -0.45 -9.34 16 5 C -0.08 -1.36 2.52 -26.73 -0.07 -1.43 16 6 H 0.10 1.91 7.85 -51.92 -0.41 1.50 16 7 C -0.14 -2.40 8.95 37.16 0.33 -2.07 16 8 S -0.31 -6.19 17.44 -107.50 -1.87 -8.06 16 9 C 0.12 2.89 1.83 -29.03 -0.05 2.83 16 10 H 0.06 1.38 5.46 -51.92 -0.28 1.10 16 11 C -0.58 -14.80 7.51 -34.44 -0.26 -15.06 16 12 H 0.06 1.68 7.80 -52.49 -0.41 1.27 16 13 C 0.03 0.80 5.46 -17.82 -0.10 0.70 16 14 N -0.89 -24.88 13.59 55.43 0.75 -24.12 16 15 Si 1.07 23.79 29.90 -169.99 -5.08 18.71 16 16 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.29 -6.11 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C -0.02 -0.53 4.67 -104.63 -0.49 -1.01 16 20 C -0.10 -2.04 8.88 -39.58 -0.35 -2.39 16 21 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 22 C -0.14 -2.50 10.05 -39.58 -0.40 -2.90 16 23 C -0.12 -2.26 10.05 -39.58 -0.40 -2.66 16 24 C -0.12 -2.48 9.03 -39.58 -0.36 -2.84 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.13 6.92 -51.93 -0.36 0.77 16 28 H 0.38 5.64 7.85 45.56 0.36 5.99 16 29 H 0.06 1.19 6.80 -51.93 -0.35 0.84 16 30 H 0.06 1.09 7.68 -51.93 -0.40 0.69 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.27 7.51 5.80 -40.82 -0.24 7.27 16 33 H 0.12 2.51 8.02 -52.49 -0.42 2.09 16 34 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.11 2.29 7.70 -52.49 -0.40 1.89 16 LS Contribution 315.20 15.07 4.75 4.75 Total: -1.00 -27.47 315.20 -8.85 -36.32 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -4.67 Total: 11.78 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: -2.28 Total: -30.03 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.75 Total: -24.12 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.45 Total: -9.34 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -5.08 Total: 18.71 kcal Atomic # 16 Polarization: -6.19 SS G_CDS: -1.87 Total: -8.06 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.47 -8.85 -36.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235593126.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.761 kcal (2) G-P(sol) polarization free energy of solvation -27.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds