Wall clock time and date at job start Mon Mar 30 2020 07:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39343 * 120.34223 * 74.41626 * 3 2 1 5 5 C 1.38302 * 120.19162 * 179.97438 * 4 3 2 6 6 C 1.38025 * 120.88385 * 359.58089 * 5 4 3 7 7 C 1.39029 * 120.26777 * 359.97438 * 6 5 4 8 8 C 1.40629 * 119.52945 * 0.18049 * 7 6 5 9 9 C 1.46033 * 106.14161 * 180.25326 * 8 7 6 10 10 C 1.34510 * 107.00689 * 359.76649 * 9 8 7 11 11 N 1.36608 * 109.89035 * 359.97438 * 10 9 8 12 12 C 1.46496 * 125.07671 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47262 * 265.42361 * 12 11 10 14 14 C 1.50701 * 115.55043 * 58.88629 * 13 12 11 15 15 H 1.07993 * 120.00420 * 219.63894 * 14 13 12 16 16 C 1.37880 * 119.99519 * 39.64248 * 14 13 12 17 17 N 1.31514 * 120.00144 * 11.71211 * 16 14 13 18 18 Si 1.86801 * 119.99675 * 191.70878 * 16 14 13 19 19 H 1.48507 * 109.47088 * 179.97438 * 18 16 14 20 20 H 1.48502 * 109.47252 * 299.99844 * 18 16 14 21 21 H 1.48495 * 109.47308 * 60.00159 * 18 16 14 22 22 C 1.53000 * 117.52120 * 204.59192 * 13 12 11 23 23 C 1.52994 * 60.00252 * 107.48231 * 22 13 12 24 24 H 1.08001 * 119.90232 * 359.52803 * 4 3 2 25 25 H 1.08009 * 119.55600 * 179.60067 * 5 4 3 26 26 H 1.07999 * 119.86995 * 180.02562 * 6 5 4 27 27 H 1.07995 * 126.49363 * 179.74319 * 9 8 7 28 28 H 1.08002 * 125.05506 * 179.97438 * 10 9 8 29 29 H 1.09007 * 109.47216 * 145.42786 * 12 11 10 30 30 H 1.08995 * 109.47411 * 25.42356 * 12 11 10 31 31 H 0.97002 * 120.00021 * 174.92560 * 17 16 14 32 32 H 1.09004 * 117.49864 * 214.97718 * 22 13 12 33 33 H 1.08999 * 117.49613 * 359.97438 * 22 13 12 34 34 H 1.09002 * 117.50006 * 252.51560 * 23 22 13 35 35 H 1.09004 * 117.49976 * 107.49000 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2721 -0.3221 -1.1584 5 6 4.6551 -0.3200 -1.1550 6 6 5.3603 0.0079 -0.0147 7 6 4.6861 0.3434 1.1540 8 6 3.2799 0.3427 1.1676 9 6 2.8867 0.7378 2.5173 10 6 4.0196 0.9407 3.2136 11 7 5.1036 0.7059 2.4161 12 6 6.5012 0.8286 2.8377 13 6 7.0233 2.2201 2.4743 14 6 6.2712 3.3758 3.0826 15 1 6.0827 4.2646 2.4988 16 6 5.8238 3.2983 4.3845 17 7 6.2435 2.3285 5.1674 18 14 4.6216 4.5708 5.0362 19 1 4.2981 4.2662 6.4532 20 1 5.2332 5.9211 4.9468 21 1 3.3772 4.5365 4.2266 22 6 8.5328 2.3814 2.2841 23 6 7.6012 2.4137 1.0709 24 1 2.7362 -0.5817 -2.0594 25 1 5.1905 -0.5781 -2.0569 26 1 6.4402 0.0047 -0.0306 27 1 1.8777 0.8469 2.8863 28 1 4.0654 1.2440 4.2491 29 1 7.1011 0.0720 2.3317 30 1 6.5694 0.6851 3.9160 31 1 5.9874 2.3152 6.1029 32 1 8.9820 3.3234 2.5990 33 1 9.1544 1.4961 2.4182 34 1 7.6097 1.5496 0.4066 35 1 7.4374 3.3769 0.5876 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236165736.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:38 Heat of formation + Delta-G solvation = 114.979937 kcal Electronic energy + Delta-G solvation = -19559.283879 eV Core-core repulsion = 16716.760591 eV Total energy + Delta-G solvation = -2842.523288 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.83557 -37.47875 -36.45364 -35.68926 -32.42734 -31.94844 -29.96520 -28.58043 -26.01498 -25.31464 -23.29021 -21.41264 -21.22499 -20.44666 -19.50875 -17.62674 -16.44696 -16.17594 -15.43899 -15.02443 -14.78049 -14.47708 -14.03941 -13.59514 -13.40334 -13.05013 -12.86519 -12.52127 -12.40975 -12.09750 -11.89318 -11.51580 -11.33332 -11.08241 -11.03804 -10.85310 -10.80245 -10.59015 -10.32851 -9.79420 -9.38832 -9.10577 -8.96185 -8.33936 -7.70183 -7.09170 -6.31121 -4.32864 0.99972 1.96366 2.98155 3.14404 3.20735 3.22079 3.28435 3.41619 3.66149 4.18994 4.27142 4.35859 4.75976 5.11883 5.21978 5.26689 5.49501 5.51085 5.67129 5.82580 5.95773 6.04553 6.13875 6.18876 6.34098 6.36847 6.39467 6.50108 6.67919 6.72331 6.75208 6.86196 7.00100 7.11582 7.13935 7.25459 7.67258 7.81430 7.86328 8.00946 8.17322 8.63015 9.27646 10.71731 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018602 B = 0.007723 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.826727 B = 3624.498222 C = 4640.369623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.274 3.726 3 C -0.010 4.010 4 C -0.094 4.094 5 C -0.127 4.127 6 C -0.081 4.081 7 C 0.095 3.905 8 C -0.061 4.061 9 C -0.258 4.258 10 C 0.128 3.872 11 N -0.436 5.436 12 C 0.136 3.864 13 C 0.032 3.968 14 C -0.477 4.477 15 H 0.061 0.939 16 C 0.073 3.927 17 N -0.890 5.890 18 Si 0.883 3.117 19 H -0.283 1.283 20 H -0.275 1.275 21 H -0.269 1.269 22 C -0.190 4.190 23 C -0.206 4.206 24 H 0.124 0.876 25 H 0.127 0.873 26 H 0.121 0.879 27 H 0.137 0.863 28 H 0.168 0.832 29 H 0.050 0.950 30 H 0.134 0.866 31 H 0.267 0.733 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 -5.478 -6.206 8.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.040 4.040 3 C -0.014 4.014 4 C -0.117 4.117 5 C -0.147 4.147 6 C -0.102 4.102 7 C -0.013 4.013 8 C -0.069 4.069 9 C -0.282 4.282 10 C -0.003 4.003 11 N -0.112 5.112 12 C 0.016 3.984 13 C 0.031 3.969 14 C -0.514 4.514 15 H 0.079 0.921 16 C -0.129 4.129 17 N -0.528 5.528 18 Si 0.710 3.290 19 H -0.209 1.209 20 H -0.201 1.201 21 H -0.194 1.194 22 C -0.229 4.229 23 C -0.243 4.243 24 H 0.142 0.858 25 H 0.145 0.855 26 H 0.139 0.861 27 H 0.154 0.846 28 H 0.185 0.815 29 H 0.068 0.932 30 H 0.152 0.848 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.659 -5.548 -5.872 8.105 hybrid contribution 0.036 0.973 0.447 1.071 sum -0.623 -4.575 -5.424 7.124 Atomic orbital electron populations 1.81152 1.12267 1.10285 1.08588 1.25786 0.92742 0.92782 0.92690 1.15331 0.83423 1.08278 0.94338 1.20745 0.94134 1.00889 0.95888 1.20497 0.93201 1.03387 0.97584 1.20269 0.99535 0.99959 0.90477 1.18117 0.92469 1.03237 0.87471 1.18900 0.92012 1.02741 0.93225 1.21436 0.97929 1.16235 0.92582 1.22016 0.84745 0.96187 0.97329 1.44103 1.07376 1.52913 1.06826 1.21767 0.76493 0.95859 1.04305 1.19273 0.91234 0.93700 0.92659 1.20461 1.33492 1.00096 0.97400 0.92107 1.24882 0.95722 0.95675 0.96580 1.69733 1.44726 1.32591 1.05779 0.86758 0.82238 0.81941 0.78055 1.20859 1.20086 1.19418 1.22928 0.95780 1.00954 1.03240 1.22958 1.08532 1.00801 0.92030 0.85837 0.85475 0.86066 0.84561 0.81468 0.93155 0.84802 0.92297 0.90022 0.91476 0.91188 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.03 18.54 41.84 0.78 -7.25 16 2 C 0.27 4.58 15.25 -22.47 -0.34 4.24 16 3 C -0.01 -0.16 5.76 -106.53 -0.61 -0.77 16 4 C -0.09 -1.25 9.75 -39.15 -0.38 -1.63 16 5 C -0.13 -1.62 9.99 -39.64 -0.40 -2.02 16 6 C -0.08 -1.23 9.87 -39.37 -0.39 -1.62 16 7 C 0.10 1.72 6.81 -83.99 -0.57 1.15 16 8 C -0.06 -1.11 6.17 -104.84 -0.65 -1.75 16 9 C -0.26 -4.81 10.93 -37.78 -0.41 -5.22 16 10 C 0.13 2.52 10.16 -16.74 -0.17 2.35 16 11 N -0.44 -8.52 2.60 -114.43 -0.30 -8.82 16 12 C 0.14 2.72 5.31 -4.04 -0.02 2.69 16 13 C 0.03 0.70 1.98 -155.66 -0.31 0.39 16 14 C -0.48 -11.67 8.58 -34.44 -0.30 -11.96 16 15 H 0.06 1.56 7.84 -52.49 -0.41 1.15 16 16 C 0.07 1.75 3.81 -17.82 -0.07 1.68 16 17 N -0.89 -21.20 10.45 55.43 0.58 -20.63 16 18 Si 0.88 19.38 29.56 -169.99 -5.02 14.35 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 C -0.19 -3.79 9.95 -26.73 -0.27 -4.05 16 23 C -0.21 -3.96 9.94 -26.73 -0.27 -4.22 16 24 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 25 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 26 H 0.12 1.69 6.55 -52.49 -0.34 1.34 16 27 H 0.14 2.35 8.06 -52.49 -0.42 1.93 16 28 H 0.17 3.35 6.98 -52.49 -0.37 2.98 16 29 H 0.05 0.90 8.11 -51.92 -0.42 0.47 16 30 H 0.13 2.91 5.87 -51.93 -0.30 2.60 16 31 H 0.27 6.17 8.32 -40.82 -0.34 5.83 16 32 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.19 6.51 -51.93 -0.34 0.85 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 305.50 15.07 4.60 4.60 Total: -1.00 -25.22 305.50 -8.37 -33.59 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -3.86 Total: 4.90 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -5.15 Total: -20.75 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 1.06 Total: -36.70 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -25.22 -8.37 -33.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236165736.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.572 kcal (2) G-P(sol) polarization free energy of solvation -25.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds