Wall clock time and date at job start Mon Mar 30 2020 07:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39343 * 120.34223 * 74.41626 * 3 2 1 5 5 C 1.38302 * 120.19162 * 179.97438 * 4 3 2 6 6 C 1.38025 * 120.88385 * 359.58089 * 5 4 3 7 7 C 1.39029 * 120.26777 * 359.97438 * 6 5 4 8 8 C 1.40629 * 119.52945 * 0.18049 * 7 6 5 9 9 C 1.46033 * 106.14161 * 180.25326 * 8 7 6 10 10 C 1.34510 * 107.00689 * 359.76649 * 9 8 7 11 11 N 1.36608 * 109.89035 * 359.97438 * 10 9 8 12 12 C 1.46496 * 125.07671 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47262 * 265.42361 * 12 11 10 14 14 C 1.50701 * 115.55043 * 58.88629 * 13 12 11 15 15 H 1.07993 * 120.00420 * 219.63894 * 14 13 12 16 16 C 1.37880 * 119.99519 * 39.64248 * 14 13 12 17 17 N 1.31514 * 120.00144 * 11.71211 * 16 14 13 18 18 Si 1.86801 * 119.99675 * 191.70878 * 16 14 13 19 19 H 1.48507 * 109.47088 * 179.97438 * 18 16 14 20 20 H 1.48502 * 109.47252 * 299.99844 * 18 16 14 21 21 H 1.48495 * 109.47308 * 60.00159 * 18 16 14 22 22 C 1.53000 * 117.52120 * 204.59192 * 13 12 11 23 23 C 1.52994 * 60.00252 * 107.48231 * 22 13 12 24 24 H 1.08001 * 119.90232 * 359.52803 * 4 3 2 25 25 H 1.08009 * 119.55600 * 179.60067 * 5 4 3 26 26 H 1.07999 * 119.86995 * 180.02562 * 6 5 4 27 27 H 1.07995 * 126.49363 * 179.74319 * 9 8 7 28 28 H 1.08002 * 125.05506 * 179.97438 * 10 9 8 29 29 H 1.09007 * 109.47216 * 145.42786 * 12 11 10 30 30 H 1.08995 * 109.47411 * 25.42356 * 12 11 10 31 31 H 0.97002 * 120.00021 * 174.92560 * 17 16 14 32 32 H 1.09004 * 117.49864 * 214.97718 * 22 13 12 33 33 H 1.08999 * 117.49613 * 359.97438 * 22 13 12 34 34 H 1.09002 * 117.50006 * 252.51560 * 23 22 13 35 35 H 1.09004 * 117.49976 * 107.49000 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2721 -0.3221 -1.1584 5 6 4.6551 -0.3200 -1.1550 6 6 5.3603 0.0079 -0.0147 7 6 4.6861 0.3434 1.1540 8 6 3.2799 0.3427 1.1676 9 6 2.8867 0.7378 2.5173 10 6 4.0196 0.9407 3.2136 11 7 5.1036 0.7059 2.4161 12 6 6.5012 0.8286 2.8377 13 6 7.0233 2.2201 2.4743 14 6 6.2712 3.3758 3.0826 15 1 6.0827 4.2646 2.4988 16 6 5.8238 3.2983 4.3845 17 7 6.2435 2.3285 5.1674 18 14 4.6216 4.5708 5.0362 19 1 4.2981 4.2662 6.4532 20 1 5.2332 5.9211 4.9468 21 1 3.3772 4.5365 4.2266 22 6 8.5328 2.3814 2.2841 23 6 7.6012 2.4137 1.0709 24 1 2.7362 -0.5817 -2.0594 25 1 5.1905 -0.5781 -2.0569 26 1 6.4402 0.0047 -0.0306 27 1 1.8777 0.8469 2.8863 28 1 4.0654 1.2440 4.2491 29 1 7.1011 0.0720 2.3317 30 1 6.5694 0.6851 3.9160 31 1 5.9874 2.3152 6.1029 32 1 8.9820 3.3234 2.5990 33 1 9.1544 1.4961 2.4182 34 1 7.6097 1.5496 0.4066 35 1 7.4374 3.3769 0.5876 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236165736.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:37 Heat of formation + Delta-G solvation = 105.754910 kcal Electronic energy + Delta-G solvation = -19559.683906 eV Core-core repulsion = 16716.760591 eV Total energy + Delta-G solvation = -2842.923315 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.16175 -38.86907 -37.91665 -36.96973 -34.23860 -33.27932 -31.26754 -29.84294 -27.73256 -26.85379 -24.55254 -22.94191 -22.44706 -21.84175 -21.12227 -19.09848 -17.97714 -17.55328 -16.85105 -16.52788 -16.20177 -15.91425 -15.44096 -14.98791 -14.90550 -14.42058 -14.28906 -13.93107 -13.67287 -13.53096 -13.42220 -13.13272 -12.87316 -12.64601 -12.45312 -12.35581 -12.20443 -12.13943 -11.83190 -11.36964 -11.12515 -10.64798 -10.39739 -10.04179 -8.98473 -8.43176 -8.14065 -6.19241 -0.22763 0.80263 1.34838 1.40875 1.46711 1.67243 1.79871 2.11058 2.28981 2.37254 2.99407 3.01666 3.13526 3.62969 3.92726 4.06082 4.15645 4.30967 4.34030 4.37689 4.59390 4.64158 4.77042 4.81071 4.93021 4.98404 5.07245 5.10738 5.15863 5.29102 5.43062 5.55057 5.56431 5.59932 5.82326 5.87144 5.97931 6.33759 6.47453 6.52716 6.65969 6.77075 7.41839 8.86522 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018602 B = 0.007723 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.826727 B = 3624.498222 C = 4640.369623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.288 3.712 3 C -0.024 4.024 4 C -0.075 4.075 5 C -0.107 4.107 6 C -0.087 4.087 7 C 0.076 3.924 8 C -0.084 4.084 9 C -0.264 4.264 10 C 0.103 3.897 11 N -0.444 5.444 12 C 0.146 3.854 13 C 0.005 3.995 14 C -0.497 4.497 15 H 0.038 0.962 16 C 0.053 3.947 17 N -0.895 5.895 18 Si 0.918 3.082 19 H -0.277 1.277 20 H -0.280 1.280 21 H -0.278 1.278 22 C -0.187 4.187 23 C -0.186 4.186 24 H 0.159 0.841 25 H 0.173 0.827 26 H 0.138 0.862 27 H 0.139 0.861 28 H 0.153 0.847 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.266 0.734 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.647 -6.774 -8.830 11.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.026 4.026 3 C -0.029 4.029 4 C -0.097 4.097 5 C -0.126 4.126 6 C -0.107 4.107 7 C -0.031 4.031 8 C -0.091 4.091 9 C -0.289 4.289 10 C -0.028 4.028 11 N -0.121 5.121 12 C 0.025 3.975 13 C 0.004 3.996 14 C -0.534 4.534 15 H 0.056 0.944 16 C -0.148 4.148 17 N -0.534 5.534 18 Si 0.745 3.255 19 H -0.202 1.202 20 H -0.206 1.206 21 H -0.204 1.204 22 C -0.226 4.226 23 C -0.223 4.223 24 H 0.177 0.823 25 H 0.191 0.809 26 H 0.155 0.845 27 H 0.157 0.843 28 H 0.170 0.830 29 H 0.092 0.908 30 H 0.129 0.871 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.156 -6.847 -8.498 10.914 hybrid contribution -0.213 1.360 1.143 1.790 sum -0.057 -5.486 -7.354 9.176 Atomic orbital electron populations 1.81163 1.13071 1.11497 1.09501 1.25926 0.92834 0.91927 0.91874 1.15504 0.82940 1.09553 0.94859 1.21240 0.94674 0.97965 0.95792 1.21033 0.92954 1.00475 0.98146 1.20637 1.00593 0.99528 0.89984 1.18505 0.92729 1.04131 0.87735 1.19026 0.92600 1.04085 0.93415 1.21575 0.97766 1.16011 0.93511 1.21875 0.85602 0.98104 0.97170 1.44033 1.06837 1.53615 1.07571 1.21528 0.77237 0.95471 1.03223 1.19324 0.92005 0.93594 0.94676 1.20569 1.34635 1.00573 0.97629 0.94408 1.25159 0.96323 0.96571 0.96741 1.69797 1.44989 1.32894 1.05710 0.86236 0.80838 0.80620 0.77807 1.20218 1.20617 1.20384 1.22907 0.95007 1.01167 1.03479 1.22959 1.06514 1.01466 0.91391 0.82333 0.80915 0.84454 0.84339 0.82957 0.90773 0.87138 0.92364 0.91513 0.89311 0.88238 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -16.69 18.54 19.00 0.35 -16.34 16 2 C 0.29 9.23 15.25 88.33 1.35 10.58 16 3 C -0.02 -0.73 5.76 -21.10 -0.12 -0.85 16 4 C -0.08 -1.64 9.75 22.55 0.22 -1.42 16 5 C -0.11 -2.13 9.99 22.23 0.22 -1.91 16 6 C -0.09 -2.27 9.87 22.41 0.22 -2.05 16 7 C 0.08 2.63 6.81 38.98 0.27 2.90 16 8 C -0.08 -2.96 6.17 -20.01 -0.12 -3.09 16 9 C -0.26 -10.11 10.93 23.44 0.26 -9.86 16 10 C 0.10 4.20 10.16 83.10 0.84 5.04 16 11 N -0.44 -17.27 2.60 -515.94 -1.34 -18.61 16 12 C 0.15 5.74 5.31 86.38 0.46 6.20 16 13 C 0.00 0.21 1.98 -52.93 -0.10 0.11 16 14 C -0.50 -24.75 8.58 25.60 0.22 -24.53 16 15 H 0.04 2.00 7.84 -2.91 -0.02 1.97 16 16 C 0.05 2.60 3.81 84.66 0.32 2.92 16 17 N -0.90 -43.54 10.45 21.45 0.22 -43.31 16 18 Si 0.92 40.70 29.56 68.60 2.03 42.72 16 19 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 C -0.19 -7.17 9.95 30.59 0.30 -6.87 16 23 C -0.19 -6.76 9.94 30.59 0.30 -6.45 16 24 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 25 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 26 H 0.14 3.14 6.55 -2.91 -0.02 3.12 16 27 H 0.14 5.00 8.06 -2.91 -0.02 4.97 16 28 H 0.15 6.48 6.98 -2.91 -0.02 6.46 16 29 H 0.07 2.48 8.11 -2.38 -0.02 2.46 16 30 H 0.11 4.86 5.87 -2.39 -0.01 4.84 16 31 H 0.27 12.57 8.32 -92.71 -0.77 11.80 16 32 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 33 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 34 H 0.10 2.99 6.51 -2.39 -0.02 2.97 16 35 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -55.65 305.50 7.01 -48.64 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 1.11 Total: 16.18 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 4.64 Total: -29.28 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -0.76 Total: -78.27 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Total: -55.65 7.01 -48.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236165736.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.398 kcal (2) G-P(sol) polarization free energy of solvation -55.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds