Wall clock time and date at job start Mon Mar 30 2020 07:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40235 * 119.97889 * 234.01727 * 3 2 1 5 5 C 1.36335 * 120.66090 * 180.02562 * 4 3 2 6 6 C 1.39351 * 120.24715 * 359.71537 * 5 4 3 7 7 C 1.40846 * 119.65323 * 0.54418 * 6 5 4 8 8 C 1.46563 * 106.03651 * 179.67555 * 7 6 5 9 9 C 1.34202 * 106.93538 * 359.78338 * 8 7 6 10 10 N 1.36850 * 109.95878 * 0.02562 * 9 8 7 11 11 C 1.46496 * 125.01911 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47180 * 265.42807 * 11 10 9 13 13 C 1.50699 * 115.54826 * 58.95640 * 12 11 10 14 14 H 1.08004 * 119.99901 * 219.63506 * 13 12 11 15 15 C 1.37876 * 120.00083 * 39.63161 * 13 12 11 16 16 N 1.31510 * 119.99954 * 11.73190 * 15 13 12 17 17 Si 1.86802 * 120.00182 * 191.72429 * 15 13 12 18 18 H 1.48495 * 109.47175 * 180.02562 * 17 15 13 19 19 H 1.48494 * 109.47537 * 300.00729 * 17 15 13 20 20 H 1.48507 * 109.46678 * 60.00618 * 17 15 13 21 21 C 1.53004 * 117.51768 * 204.65633 * 12 11 10 22 22 C 1.52997 * 117.50039 * 273.28587 * 12 11 10 23 23 C 1.39171 * 119.98060 * 54.03945 * 3 2 1 24 24 H 1.07998 * 119.66560 * 0.02562 * 4 3 2 25 25 H 1.08003 * 119.87454 * 179.97438 * 5 4 3 26 26 H 1.07999 * 126.53308 * 179.74710 * 8 7 6 27 27 H 1.07997 * 125.02088 * 179.97438 * 9 8 7 28 28 H 1.08998 * 109.47196 * 145.42945 * 11 10 9 29 29 H 1.08995 * 109.47149 * 25.43263 * 11 10 9 30 30 H 0.97006 * 120.00325 * 174.92032 * 16 15 13 31 31 H 1.09004 * 117.49601 * 214.97287 * 21 12 11 32 32 H 1.08997 * 117.49767 * 359.97438 * 21 12 11 33 33 H 1.08997 * 117.49961 * 359.97356 * 22 12 11 34 34 H 1.09003 * 117.50340 * 144.99712 * 22 12 11 35 35 H 1.08002 * 120.30677 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2684 0.7147 0.9830 5 6 4.6316 0.7252 0.9958 6 6 5.3482 0.0188 0.0317 7 6 4.6568 -0.6978 -0.9643 8 6 5.6852 -1.3110 -1.8096 9 6 6.8742 -0.9453 -1.3061 10 7 6.6916 -0.1492 -0.2080 11 6 7.7684 0.4337 0.5962 12 6 8.0652 -0.4779 1.7886 13 6 8.4801 -1.8850 1.4435 14 1 8.1174 -2.7146 2.0323 15 6 9.3225 -2.1132 0.3762 16 7 9.9464 -1.1068 -0.1960 17 14 9.5779 -3.8520 -0.2570 18 1 10.5233 -3.8280 -1.4018 19 1 10.1371 -4.6970 0.8286 20 1 8.2766 -4.4133 -0.7007 21 6 8.6967 0.1612 3.0271 22 6 7.2313 -0.2779 3.0556 23 6 3.2637 -0.7069 -0.9757 24 1 2.7224 1.2616 1.7373 25 1 5.1582 1.2798 1.7585 26 1 5.5180 -1.9381 -2.6728 27 1 7.8334 -1.2369 -1.7075 28 1 7.4618 1.4155 0.9569 29 1 8.6647 0.5351 -0.0157 30 1 10.5947 -1.2740 -0.8979 31 1 9.4122 -0.4361 3.5922 32 1 8.9012 1.2313 2.9923 33 1 6.4715 0.5035 3.0399 34 1 6.9827 -1.1640 3.6397 35 1 2.7287 -1.2584 -1.7348 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236165873.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:22 Heat of formation + Delta-G solvation = 113.849523 kcal Electronic energy + Delta-G solvation = -19425.109415 eV Core-core repulsion = 16582.537108 eV Total energy + Delta-G solvation = -2842.572307 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.83957 -37.63036 -36.62266 -35.48648 -32.43514 -31.96747 -30.03410 -28.62215 -26.11777 -25.43701 -22.80735 -21.92676 -21.36849 -20.06336 -19.11410 -18.06941 -16.98223 -15.89921 -15.68550 -14.85349 -14.49662 -14.31086 -13.81879 -13.62754 -13.58703 -13.23796 -12.97896 -12.58610 -12.34299 -12.19608 -11.91019 -11.78181 -11.45926 -11.07338 -11.01319 -10.78953 -10.68809 -10.54118 -10.29933 -9.80112 -9.41213 -9.18858 -8.96903 -8.34553 -7.68957 -7.12968 -6.31747 -4.33565 1.24022 1.67160 2.91495 3.13669 3.19985 3.26108 3.30592 3.37116 3.62789 4.17960 4.23766 4.32992 4.75311 5.02774 5.19574 5.27393 5.49739 5.59705 5.69857 5.81221 5.93892 6.05315 6.17994 6.20297 6.29520 6.34684 6.37407 6.51207 6.65549 6.69255 6.74142 6.85421 7.00796 7.11906 7.14200 7.27544 7.66333 7.74957 7.85590 7.99121 8.16506 8.62198 9.26866 10.71109 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022678 B = 0.006427 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.361839 B = 4355.368907 C = 5031.071285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.275 3.725 3 C -0.085 4.085 4 C -0.071 4.071 5 C -0.118 4.118 6 C 0.127 3.873 7 C -0.117 4.117 8 C -0.238 4.238 9 C 0.108 3.892 10 N -0.433 5.433 11 C 0.134 3.866 12 C 0.032 3.968 13 C -0.477 4.477 14 H 0.061 0.939 15 C 0.073 3.927 16 N -0.890 5.890 17 Si 0.884 3.116 18 H -0.283 1.283 19 H -0.276 1.276 20 H -0.269 1.269 21 C -0.191 4.191 22 C -0.206 4.206 23 C -0.012 4.012 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.140 0.860 27 H 0.167 0.833 28 H 0.050 0.950 29 H 0.135 0.865 30 H 0.267 0.733 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 3.277 -1.496 5.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.039 4.039 3 C -0.091 4.091 4 C -0.092 4.092 5 C -0.138 4.138 6 C 0.015 3.985 7 C -0.123 4.123 8 C -0.261 4.261 9 C -0.020 4.020 10 N -0.108 5.108 11 C 0.014 3.986 12 C 0.031 3.969 13 C -0.514 4.514 14 H 0.079 0.921 15 C -0.128 4.128 16 N -0.528 5.528 17 Si 0.711 3.289 18 H -0.209 1.209 19 H -0.201 1.201 20 H -0.194 1.194 21 C -0.229 4.229 22 C -0.243 4.243 23 C -0.034 4.034 24 H 0.142 0.858 25 H 0.141 0.859 26 H 0.158 0.842 27 H 0.184 0.816 28 H 0.069 0.931 29 H 0.152 0.848 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.318 3.451 -1.529 6.522 hybrid contribution 0.849 -1.044 -0.063 1.347 sum -4.470 2.406 -1.592 5.320 Atomic orbital electron populations 1.81181 1.12312 1.10314 1.09307 1.25817 0.92690 0.92603 0.92761 1.15559 0.83622 1.08133 1.01750 1.20236 0.93029 0.98672 0.97308 1.19647 0.92971 1.02269 0.98925 1.18497 0.84357 0.98861 0.96785 1.19005 0.92275 1.02784 0.98216 1.21516 0.90465 1.09750 1.04397 1.21968 0.99394 0.92921 0.87730 1.44179 1.03811 1.39739 1.23086 1.21789 0.89645 0.92705 0.94487 1.19268 0.97308 0.95551 0.84742 1.20456 1.28440 0.89986 1.12558 0.92128 1.24881 0.94961 0.97130 0.95863 1.69735 1.25728 1.30358 1.27006 0.86740 0.78551 0.84735 0.78835 1.20877 1.20130 1.19441 1.22930 0.94690 0.98562 1.06732 1.22962 0.93338 1.01819 1.06195 1.20399 0.91973 0.95243 0.95764 0.85761 0.85878 0.84175 0.81582 0.93131 0.84785 0.92316 0.90024 0.91482 0.91141 0.90468 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.46 18.54 41.84 0.78 -6.68 16 2 C 0.28 4.08 15.32 -22.47 -0.34 3.74 16 3 C -0.09 -1.22 5.73 -106.87 -0.61 -1.84 16 4 C -0.07 -0.97 9.66 -39.52 -0.38 -1.35 16 5 C -0.12 -1.81 9.79 -39.85 -0.39 -2.20 16 6 C 0.13 2.25 6.81 -83.93 -0.57 1.68 16 7 C -0.12 -1.99 6.36 -105.16 -0.67 -2.66 16 8 C -0.24 -4.05 11.09 -37.65 -0.42 -4.46 16 9 C 0.11 2.04 10.16 -16.73 -0.17 1.87 16 10 N -0.43 -8.27 2.60 -114.37 -0.30 -8.57 16 11 C 0.13 2.65 5.30 -4.04 -0.02 2.63 16 12 C 0.03 0.69 1.98 -155.66 -0.31 0.38 16 13 C -0.48 -11.53 8.58 -34.44 -0.30 -11.83 16 14 H 0.06 1.54 7.84 -52.48 -0.41 1.13 16 15 C 0.07 1.73 3.81 -17.82 -0.07 1.66 16 16 N -0.89 -20.90 10.46 55.43 0.58 -20.32 16 17 Si 0.88 18.92 29.56 -169.99 -5.02 13.90 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 C -0.19 -3.79 9.95 -26.73 -0.27 -4.06 16 22 C -0.21 -3.97 9.94 -26.73 -0.27 -4.24 16 23 C -0.01 -0.18 9.81 -38.84 -0.38 -0.56 16 24 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 25 H 0.12 1.75 6.58 -52.48 -0.35 1.41 16 26 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 27 H 0.17 3.20 6.98 -52.49 -0.37 2.84 16 28 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 29 H 0.13 2.88 5.86 -51.93 -0.30 2.58 16 30 H 0.27 6.07 8.32 -40.82 -0.34 5.73 16 31 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.22 6.53 -51.93 -0.34 0.88 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 305.57 15.07 4.60 4.60 Total: -1.00 -24.64 305.57 -8.38 -33.02 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -3.86 Total: 5.29 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -5.16 Total: -21.24 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 1.06 Total: -35.58 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -24.64 -8.38 -33.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236165873.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.871 kcal (2) G-P(sol) polarization free energy of solvation -24.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds