Wall clock time and date at job start Mon Mar 30 2020 07:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40235 * 119.97889 * 234.01727 * 3 2 1 5 5 C 1.36335 * 120.66090 * 180.02562 * 4 3 2 6 6 C 1.39351 * 120.24715 * 359.71537 * 5 4 3 7 7 C 1.40846 * 119.65323 * 0.54418 * 6 5 4 8 8 C 1.46563 * 106.03651 * 179.67555 * 7 6 5 9 9 C 1.34202 * 106.93538 * 359.78338 * 8 7 6 10 10 N 1.36850 * 109.95878 * 0.02562 * 9 8 7 11 11 C 1.46496 * 125.01911 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47180 * 265.42807 * 11 10 9 13 13 C 1.50699 * 115.54826 * 58.95640 * 12 11 10 14 14 H 1.08004 * 119.99901 * 219.63506 * 13 12 11 15 15 C 1.37876 * 120.00083 * 39.63161 * 13 12 11 16 16 N 1.31510 * 119.99954 * 11.73190 * 15 13 12 17 17 Si 1.86802 * 120.00182 * 191.72429 * 15 13 12 18 18 H 1.48495 * 109.47175 * 180.02562 * 17 15 13 19 19 H 1.48494 * 109.47537 * 300.00729 * 17 15 13 20 20 H 1.48507 * 109.46678 * 60.00618 * 17 15 13 21 21 C 1.53004 * 117.51768 * 204.65633 * 12 11 10 22 22 C 1.52997 * 117.50039 * 273.28587 * 12 11 10 23 23 C 1.39171 * 119.98060 * 54.03945 * 3 2 1 24 24 H 1.07998 * 119.66560 * 0.02562 * 4 3 2 25 25 H 1.08003 * 119.87454 * 179.97438 * 5 4 3 26 26 H 1.07999 * 126.53308 * 179.74710 * 8 7 6 27 27 H 1.07997 * 125.02088 * 179.97438 * 9 8 7 28 28 H 1.08998 * 109.47196 * 145.42945 * 11 10 9 29 29 H 1.08995 * 109.47149 * 25.43263 * 11 10 9 30 30 H 0.97006 * 120.00325 * 174.92032 * 16 15 13 31 31 H 1.09004 * 117.49601 * 214.97287 * 21 12 11 32 32 H 1.08997 * 117.49767 * 359.97438 * 21 12 11 33 33 H 1.08997 * 117.49961 * 359.97356 * 22 12 11 34 34 H 1.09003 * 117.50340 * 144.99712 * 22 12 11 35 35 H 1.08002 * 120.30677 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2684 0.7147 0.9830 5 6 4.6316 0.7252 0.9958 6 6 5.3482 0.0188 0.0317 7 6 4.6568 -0.6978 -0.9643 8 6 5.6852 -1.3110 -1.8096 9 6 6.8742 -0.9453 -1.3061 10 7 6.6916 -0.1492 -0.2080 11 6 7.7684 0.4337 0.5962 12 6 8.0652 -0.4779 1.7886 13 6 8.4801 -1.8850 1.4435 14 1 8.1174 -2.7146 2.0323 15 6 9.3225 -2.1132 0.3762 16 7 9.9464 -1.1068 -0.1960 17 14 9.5779 -3.8520 -0.2570 18 1 10.5233 -3.8280 -1.4018 19 1 10.1371 -4.6970 0.8286 20 1 8.2766 -4.4133 -0.7007 21 6 8.6967 0.1612 3.0271 22 6 7.2313 -0.2779 3.0556 23 6 3.2637 -0.7069 -0.9757 24 1 2.7224 1.2616 1.7373 25 1 5.1582 1.2798 1.7585 26 1 5.5180 -1.9381 -2.6728 27 1 7.8334 -1.2369 -1.7075 28 1 7.4618 1.4155 0.9569 29 1 8.6647 0.5351 -0.0157 30 1 10.5947 -1.2740 -0.8979 31 1 9.4122 -0.4361 3.5922 32 1 8.9012 1.2313 2.9923 33 1 6.4715 0.5035 3.0399 34 1 6.9827 -1.1640 3.6397 35 1 2.7287 -1.2584 -1.7348 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236165873.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:21 Heat of formation + Delta-G solvation = 105.589062 kcal Electronic energy + Delta-G solvation = -19425.467615 eV Core-core repulsion = 16582.537108 eV Total energy + Delta-G solvation = -2842.930507 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.13394 -38.95321 -38.08519 -36.73117 -34.21941 -33.26926 -31.30655 -29.87836 -27.76354 -27.00027 -24.07755 -23.18587 -22.86141 -21.53541 -20.61221 -19.30235 -18.53759 -17.40501 -16.96856 -16.58504 -15.94705 -15.59712 -15.25376 -14.87947 -14.87017 -14.52877 -14.41411 -13.92393 -13.58399 -13.53261 -13.45300 -13.13087 -13.02914 -12.76568 -12.54828 -12.33367 -12.14951 -12.06278 -11.65122 -11.34367 -11.11055 -10.64701 -10.46019 -10.03561 -8.97527 -8.42133 -8.11020 -6.17242 0.04521 0.47676 1.39695 1.45348 1.51065 1.73407 1.98219 2.13759 2.28239 2.41154 3.00842 3.04284 3.13750 3.63058 3.84854 4.07999 4.13271 4.27990 4.32897 4.45896 4.61512 4.63484 4.74728 4.88398 4.91388 4.97746 5.02932 5.14763 5.20524 5.28957 5.42739 5.46024 5.52370 5.57932 5.83798 5.90307 6.01050 6.35080 6.51228 6.58678 6.66299 6.78532 7.44198 8.89639 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022678 B = 0.006427 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.361839 B = 4355.368907 C = 5031.071285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C 0.295 3.705 3 C -0.083 4.083 4 C -0.055 4.055 5 C -0.127 4.127 6 C 0.110 3.890 7 C -0.136 4.136 8 C -0.228 4.228 9 C 0.076 3.924 10 N -0.443 5.443 11 C 0.145 3.855 12 C 0.008 3.992 13 C -0.498 4.498 14 H 0.037 0.963 15 C 0.054 3.946 16 N -0.896 5.896 17 Si 0.923 3.077 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.272 1.272 21 C -0.189 4.189 22 C -0.189 4.189 23 C -0.005 4.005 24 H 0.154 0.846 25 H 0.135 0.865 26 H 0.162 0.838 27 H 0.153 0.847 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.267 0.733 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.483 3.972 -1.378 6.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.019 4.019 3 C -0.088 4.088 4 C -0.076 4.076 5 C -0.148 4.148 6 C -0.002 4.002 7 C -0.141 4.141 8 C -0.252 4.252 9 C -0.051 4.051 10 N -0.119 5.119 11 C 0.023 3.977 12 C 0.007 3.993 13 C -0.536 4.536 14 H 0.056 0.944 15 C -0.148 4.148 16 N -0.534 5.534 17 Si 0.750 3.250 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.227 4.227 22 C -0.226 4.226 23 C -0.026 4.026 24 H 0.172 0.828 25 H 0.153 0.847 26 H 0.180 0.820 27 H 0.170 0.830 28 H 0.088 0.912 29 H 0.130 0.870 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.831 4.147 -1.417 8.116 hybrid contribution 1.246 -1.267 -0.083 1.779 sum -5.585 2.880 -1.500 6.460 Atomic orbital electron populations 1.81220 1.13066 1.11186 1.10164 1.25705 0.92423 0.91790 0.91950 1.15597 0.83278 1.08084 1.01843 1.20541 0.92516 0.97448 0.97132 1.19831 0.93518 1.02492 0.98913 1.18901 0.83846 0.99621 0.97792 1.19176 0.93124 1.03433 0.98406 1.21826 0.89978 1.08891 1.04539 1.21937 0.99570 0.94728 0.88878 1.44107 1.04222 1.40326 1.23261 1.21521 0.89453 0.93202 0.93479 1.19336 0.99046 0.94826 0.86092 1.20536 1.29061 0.90961 1.12995 0.94447 1.25186 0.94815 0.98915 0.95842 1.69806 1.25709 1.30969 1.26957 0.86162 0.78215 0.82412 0.78255 1.20169 1.21012 1.19755 1.22914 0.94944 0.99375 1.05498 1.22948 0.93527 1.01969 1.04151 1.20600 0.91149 0.94750 0.96095 0.82844 0.84694 0.82036 0.82983 0.91214 0.86999 0.92332 0.91468 0.89487 0.88571 0.91468 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -14.53 18.54 19.00 0.35 -14.18 16 2 C 0.29 7.85 15.32 88.33 1.35 9.20 16 3 C -0.08 -2.10 5.73 -21.32 -0.12 -2.22 16 4 C -0.05 -1.31 9.66 22.31 0.22 -1.10 16 5 C -0.13 -3.55 9.79 22.09 0.22 -3.33 16 6 C 0.11 3.71 6.81 39.16 0.27 3.98 16 7 C -0.14 -4.37 6.36 -20.21 -0.13 -4.49 16 8 C -0.23 -7.58 11.09 23.52 0.26 -7.31 16 9 C 0.08 2.89 10.16 82.99 0.84 3.74 16 10 N -0.44 -16.74 2.60 -515.76 -1.34 -18.08 16 11 C 0.14 5.66 5.30 86.38 0.46 6.12 16 12 C 0.01 0.34 1.98 -52.93 -0.10 0.23 16 13 C -0.50 -24.48 8.58 25.60 0.22 -24.26 16 14 H 0.04 1.95 7.84 -2.91 -0.02 1.93 16 15 C 0.05 2.55 3.81 84.65 0.32 2.87 16 16 N -0.90 -42.64 10.46 21.45 0.22 -42.42 16 17 Si 0.92 39.24 29.56 68.60 2.03 41.26 16 18 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 21 C -0.19 -7.35 9.95 30.60 0.30 -7.05 16 22 C -0.19 -7.03 9.94 30.59 0.30 -6.72 16 23 C 0.00 -0.13 9.81 22.75 0.22 0.10 16 24 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 25 H 0.14 3.40 6.58 -2.91 -0.02 3.38 16 26 H 0.16 4.43 8.06 -2.91 -0.02 4.40 16 27 H 0.15 6.05 6.98 -2.91 -0.02 6.03 16 28 H 0.07 2.38 8.11 -2.39 -0.02 2.36 16 29 H 0.11 4.87 5.86 -2.39 -0.01 4.86 16 30 H 0.27 12.27 8.32 -92.70 -0.77 11.50 16 31 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 32 H 0.09 3.00 8.14 -2.39 -0.02 2.99 16 33 H 0.10 3.04 6.53 -2.39 -0.02 3.03 16 34 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -52.17 305.57 7.01 -45.16 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 1.11 Total: 18.51 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 4.63 Total: -30.26 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -0.76 Total: -74.68 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.26 kcal Total: -52.17 7.01 -45.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236165873.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.754 kcal (2) G-P(sol) polarization free energy of solvation -52.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds