Wall clock time and date at job start Mon Mar 30 2020 06:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00063 * 2 1 4 4 H 1.48499 * 109.46739 * 269.99859 * 3 2 1 5 5 H 1.48495 * 109.47140 * 29.99924 * 3 2 1 6 6 H 1.48504 * 109.46892 * 149.99722 * 3 2 1 7 7 C 1.37877 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99315 * 172.57717 * 7 2 1 9 9 C 1.50699 * 120.00353 * 352.58121 * 7 2 1 10 10 C 1.53004 * 115.54816 * 294.64320 * 9 7 2 11 11 O 1.42899 * 109.47123 * 275.55399 * 10 9 7 12 12 C 1.35942 * 117.00062 * 184.85267 * 11 10 9 13 13 C 1.38729 * 120.02879 * 354.90356 * 12 11 10 14 14 C 1.38132 * 119.96656 * 180.22721 * 13 12 11 15 15 C 1.38478 * 120.03075 * 359.50420 * 14 13 12 16 16 F 1.35103 * 119.96782 * 180.25254 * 15 14 13 17 17 C 1.38424 * 120.05866 * 0.49933 * 15 14 13 18 18 C 1.38173 * 120.03578 * 359.75087 * 17 15 14 19 19 C 1.50699 * 120.01980 * 179.97438 * 18 17 15 20 20 O 1.42895 * 109.47136 * 5.17488 * 19 18 17 21 21 C 1.53003 * 117.51840 * 80.34206 * 9 7 2 22 22 C 1.53001 * 117.50015 * 148.97226 * 9 7 2 23 23 H 0.97000 * 119.99840 * 5.00990 * 1 2 3 24 24 H 1.09002 * 109.46801 * 155.55630 * 10 9 7 25 25 H 1.08997 * 109.46900 * 35.55643 * 10 9 7 26 26 H 1.08004 * 120.01546 * 359.95942 * 13 12 11 27 27 H 1.07997 * 119.98042 * 179.75128 * 14 13 12 28 28 H 1.07996 * 119.98578 * 179.77537 * 17 15 14 29 29 H 1.08995 * 109.47347 * 125.17526 * 19 18 17 30 30 H 1.08998 * 109.46775 * 245.17424 * 19 18 17 31 31 H 0.96698 * 114.00234 * 180.02562 * 20 19 18 32 32 H 1.08992 * 117.49842 * 214.97361 * 21 9 7 33 33 H 1.09001 * 117.49656 * 359.97438 * 21 9 7 34 34 H 1.08994 * 117.49758 * 359.97438 * 22 9 7 35 35 H 1.08996 * 117.49985 * 144.97323 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0777 -1.1980 -0.1203 9 6 1.2604 -2.4936 0.1696 10 6 0.5785 -2.6921 1.5249 11 8 1.5235 -3.2130 2.4618 12 6 1.0531 -3.5439 3.6936 13 6 -0.2655 -3.2729 4.0290 14 6 -0.7408 -3.6054 5.2826 15 6 0.0953 -4.2182 6.2007 16 9 -0.3724 -4.5475 7.4247 17 6 1.4112 -4.4891 5.8673 18 6 1.8908 -4.1530 4.6159 19 6 3.3236 -4.4475 4.2534 20 8 3.9426 -5.1783 5.3140 21 6 0.5655 -3.0759 -1.0629 22 6 1.8363 -3.7323 -0.5196 23 1 -0.4850 0.8368 -0.0734 24 1 -0.2492 -3.3929 1.4159 25 1 0.1998 -1.7354 1.8845 26 1 -0.9188 -2.7982 3.3118 27 1 -1.7661 -3.3908 5.5454 28 1 2.0632 -4.9638 6.5855 29 1 3.3527 -5.0397 3.3389 30 1 3.8587 -3.5109 4.0970 31 1 4.8687 -5.4025 5.1489 32 1 -0.3774 -3.6003 -0.9082 33 1 0.6460 -2.5187 -1.9962 34 1 2.7531 -3.6071 -1.0957 35 1 1.7298 -4.6885 -0.0074 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236517588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:45 Heat of formation + Delta-G solvation = -87.346047 kcal Electronic energy + Delta-G solvation = -19927.865052 eV Core-core repulsion = 16613.506275 eV Total energy + Delta-G solvation = -3314.358777 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.58886 -39.87304 -37.55744 -36.46143 -35.67974 -32.12943 -31.59090 -29.39751 -26.75553 -25.91589 -25.36695 -22.10481 -21.46477 -21.16095 -19.26406 -17.77928 -17.37591 -16.81616 -16.45367 -15.61712 -15.56784 -15.05124 -14.70472 -14.37136 -14.34659 -14.14538 -13.93216 -13.38353 -12.89071 -12.80869 -12.02993 -11.81580 -11.64365 -11.53850 -11.07194 -11.01999 -10.66156 -10.53838 -10.33117 -10.24263 -10.20751 -9.62390 -9.00568 -8.76148 -8.65084 -8.30158 -7.65676 -6.17303 -4.21710 1.34055 1.49867 3.22206 3.30267 3.34272 3.75336 3.78307 4.19173 4.30853 4.49406 4.90323 5.05116 5.07859 5.32133 5.39991 5.48060 5.53835 5.66737 5.86504 5.97129 6.05477 6.12570 6.22796 6.28692 6.36196 6.46127 6.57705 6.60959 6.65745 6.91976 7.02248 7.25783 7.32030 7.63763 7.77463 7.99635 8.27806 8.77970 9.42937 10.91076 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019494 B = 0.005402 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.030838 B = 5182.334327 C = 5393.584555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.069 3.931 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.045 3.955 10 C 0.103 3.897 11 O -0.299 6.299 12 C 0.145 3.855 13 C -0.185 4.185 14 C -0.111 4.111 15 C 0.037 3.963 16 F -0.148 7.148 17 C -0.093 4.093 18 C -0.110 4.110 19 C 0.130 3.870 20 O -0.575 6.575 21 C -0.164 4.164 22 C -0.198 4.198 23 H 0.263 0.737 24 H 0.035 0.965 25 H 0.080 0.920 26 H 0.143 0.857 27 H 0.133 0.867 28 H 0.144 0.856 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.382 0.618 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.939 -7.691 7.631 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.528 4.528 8 H 0.081 0.919 9 C 0.044 3.956 10 C 0.029 3.971 11 O -0.211 6.211 12 C 0.098 3.902 13 C -0.204 4.204 14 C -0.130 4.130 15 C 0.018 3.982 16 F -0.127 7.127 17 C -0.112 4.112 18 C -0.111 4.111 19 C 0.052 3.948 20 O -0.381 6.381 21 C -0.201 4.201 22 C -0.235 4.235 23 H 0.073 0.927 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.160 0.840 27 H 0.151 0.849 28 H 0.162 0.838 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.229 0.771 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.354 -7.501 7.899 10.977 hybrid contribution 0.427 0.962 -0.173 1.066 sum 1.781 -6.539 7.726 10.277 Atomic orbital electron populations 1.69941 1.05929 1.27143 1.49024 1.24998 0.94887 0.99123 0.94372 0.86578 0.80089 0.83143 0.78258 1.20544 1.21048 1.19630 1.20463 0.93341 0.88533 1.50425 0.91888 1.18735 0.98078 0.92193 0.86570 1.22713 0.88982 0.97090 0.88354 1.86171 1.39286 1.76838 1.18823 1.18917 0.91684 0.93206 0.86442 1.21196 0.95650 1.05665 0.97876 1.20907 0.99985 0.99048 0.93046 1.17484 0.93516 1.05481 0.81715 1.91442 1.89018 1.91198 1.41075 1.20670 0.93628 1.00157 0.96739 1.18797 0.95470 1.03604 0.93188 1.20653 0.89458 0.95721 0.88919 1.86373 1.29879 1.77217 1.44655 1.22762 0.93672 1.03510 1.00194 1.22818 0.97489 0.96992 1.06208 0.92730 0.94708 0.90221 0.83971 0.84930 0.83780 0.91667 0.91578 0.77136 0.91663 0.89649 0.90222 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.74 12.59 55.43 0.70 -23.04 16 2 C 0.07 1.82 5.23 -17.82 -0.09 1.73 16 3 Si 0.89 20.45 29.55 -169.99 -5.02 15.42 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.49 -12.85 8.82 -34.44 -0.30 -13.15 16 8 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 9 C 0.04 1.06 1.55 -155.66 -0.24 0.82 16 10 C 0.10 2.24 4.57 37.16 0.17 2.41 16 11 O -0.30 -6.11 9.49 -19.56 -0.19 -6.29 16 12 C 0.15 2.63 6.65 -39.23 -0.26 2.37 16 13 C -0.19 -3.09 9.03 -39.44 -0.36 -3.45 16 14 C -0.11 -1.67 10.02 -39.53 -0.40 -2.07 16 15 C 0.04 0.58 7.30 -39.42 -0.29 0.29 16 16 F -0.15 -2.27 17.27 2.25 0.04 -2.23 16 17 C -0.09 -1.45 9.35 -39.54 -0.37 -1.82 16 18 C -0.11 -1.80 5.89 -104.48 -0.62 -2.41 16 19 C 0.13 1.84 6.90 36.01 0.25 2.08 16 20 O -0.58 -7.01 12.16 -35.23 -0.43 -7.44 16 21 C -0.16 -3.59 9.88 -26.73 -0.26 -3.85 16 22 C -0.20 -4.12 9.88 -26.73 -0.26 -4.38 16 23 H 0.26 6.77 8.32 -40.82 -0.34 6.44 16 24 H 0.03 0.70 7.38 -51.93 -0.38 0.32 16 25 H 0.08 1.90 6.84 -51.93 -0.36 1.54 16 26 H 0.14 2.34 6.32 -52.48 -0.33 2.01 16 27 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 28 H 0.14 2.10 7.02 -52.49 -0.37 1.73 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.38 2.74 9.12 45.56 0.42 3.15 16 32 H 0.06 1.33 8.06 -51.93 -0.42 0.91 16 33 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 34 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 307.08 15.07 4.63 4.63 Total: -1.00 -28.21 307.08 -6.83 -35.04 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -3.52 Total: 5.36 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -3.03 Total: -21.44 kcal Atomic # 7 Polarization: -23.74 SS G_CDS: 0.70 Total: -23.04 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.61 Total: -13.73 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.21 -6.83 -35.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236517588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.307 kcal (2) G-P(sol) polarization free energy of solvation -28.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds