Wall clock time and date at job start Mon Mar 30 2020 06:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00063 * 2 1 4 4 H 1.48499 * 109.46739 * 269.99859 * 3 2 1 5 5 H 1.48495 * 109.47140 * 29.99924 * 3 2 1 6 6 H 1.48504 * 109.46892 * 149.99722 * 3 2 1 7 7 C 1.37877 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99315 * 172.57717 * 7 2 1 9 9 C 1.50699 * 120.00353 * 352.58121 * 7 2 1 10 10 C 1.53004 * 115.54816 * 294.64320 * 9 7 2 11 11 O 1.42899 * 109.47123 * 275.55399 * 10 9 7 12 12 C 1.35942 * 117.00062 * 184.85267 * 11 10 9 13 13 C 1.38729 * 120.02879 * 354.90356 * 12 11 10 14 14 C 1.38132 * 119.96656 * 180.22721 * 13 12 11 15 15 C 1.38478 * 120.03075 * 359.50420 * 14 13 12 16 16 F 1.35103 * 119.96782 * 180.25254 * 15 14 13 17 17 C 1.38424 * 120.05866 * 0.49933 * 15 14 13 18 18 C 1.38173 * 120.03578 * 359.75087 * 17 15 14 19 19 C 1.50699 * 120.01980 * 179.97438 * 18 17 15 20 20 O 1.42895 * 109.47136 * 5.17488 * 19 18 17 21 21 C 1.53003 * 117.51840 * 80.34206 * 9 7 2 22 22 C 1.53001 * 117.50015 * 148.97226 * 9 7 2 23 23 H 0.97000 * 119.99840 * 5.00990 * 1 2 3 24 24 H 1.09002 * 109.46801 * 155.55630 * 10 9 7 25 25 H 1.08997 * 109.46900 * 35.55643 * 10 9 7 26 26 H 1.08004 * 120.01546 * 359.95942 * 13 12 11 27 27 H 1.07997 * 119.98042 * 179.75128 * 14 13 12 28 28 H 1.07996 * 119.98578 * 179.77537 * 17 15 14 29 29 H 1.08995 * 109.47347 * 125.17526 * 19 18 17 30 30 H 1.08998 * 109.46775 * 245.17424 * 19 18 17 31 31 H 0.96698 * 114.00234 * 180.02562 * 20 19 18 32 32 H 1.08992 * 117.49842 * 214.97361 * 21 9 7 33 33 H 1.09001 * 117.49656 * 359.97438 * 21 9 7 34 34 H 1.08994 * 117.49758 * 359.97438 * 22 9 7 35 35 H 1.08996 * 117.49985 * 144.97323 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0777 -1.1980 -0.1203 9 6 1.2604 -2.4936 0.1696 10 6 0.5785 -2.6921 1.5249 11 8 1.5235 -3.2130 2.4618 12 6 1.0531 -3.5439 3.6936 13 6 -0.2655 -3.2729 4.0290 14 6 -0.7408 -3.6054 5.2826 15 6 0.0953 -4.2182 6.2007 16 9 -0.3724 -4.5475 7.4247 17 6 1.4112 -4.4891 5.8673 18 6 1.8908 -4.1530 4.6159 19 6 3.3236 -4.4475 4.2534 20 8 3.9426 -5.1783 5.3140 21 6 0.5655 -3.0759 -1.0629 22 6 1.8363 -3.7323 -0.5196 23 1 -0.4850 0.8368 -0.0734 24 1 -0.2492 -3.3929 1.4159 25 1 0.1998 -1.7354 1.8845 26 1 -0.9188 -2.7982 3.3118 27 1 -1.7661 -3.3908 5.5454 28 1 2.0632 -4.9638 6.5855 29 1 3.3527 -5.0397 3.3389 30 1 3.8587 -3.5109 4.0970 31 1 4.8687 -5.4025 5.1489 32 1 -0.3774 -3.6003 -0.9082 33 1 0.6460 -2.5187 -1.9962 34 1 2.7531 -3.6071 -1.0957 35 1 1.7298 -4.6885 -0.0074 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236517588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:45 Heat of formation + Delta-G solvation = -103.794720 kcal Electronic energy + Delta-G solvation = -19928.578320 eV Core-core repulsion = 16613.506275 eV Total energy + Delta-G solvation = -3315.072045 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.81989 -41.23710 -39.02273 -37.67278 -37.14687 -34.09657 -32.79285 -30.71261 -28.42443 -27.26536 -27.08291 -23.45918 -22.98457 -22.57984 -21.04692 -19.06116 -18.68574 -18.11388 -18.04169 -17.01450 -16.93112 -16.61448 -16.26592 -15.81227 -15.63547 -15.54380 -15.11121 -14.92096 -14.40179 -14.12583 -13.63383 -13.31269 -13.22354 -12.89938 -12.82394 -12.66699 -12.38705 -12.09665 -11.87835 -11.77334 -11.39641 -11.24878 -10.85347 -10.51811 -10.10900 -9.98306 -9.00356 -8.15321 -6.24444 0.10387 0.19919 1.39673 1.43424 1.51883 2.27077 2.40755 2.50296 3.10238 3.18469 3.25860 3.57143 3.70045 3.89767 4.10506 4.24311 4.27622 4.34707 4.43369 4.51748 4.56628 4.68239 4.73745 4.84930 4.92024 4.97476 5.09445 5.12613 5.19384 5.32805 5.51516 5.57719 5.75440 5.77966 6.35089 6.51408 6.77997 6.90222 7.42122 8.92360 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019494 B = 0.005402 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.030838 B = 5182.334327 C = 5393.584555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.029 3.971 3 Si 0.945 3.055 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.507 4.507 8 H 0.052 0.948 9 C 0.011 3.989 10 C 0.120 3.880 11 O -0.311 6.311 12 C 0.119 3.881 13 C -0.190 4.190 14 C -0.107 4.107 15 C 0.039 3.961 16 F -0.145 7.145 17 C -0.093 4.093 18 C -0.114 4.114 19 C 0.135 3.865 20 O -0.580 6.580 21 C -0.163 4.163 22 C -0.176 4.176 23 H 0.263 0.737 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.140 0.860 27 H 0.159 0.841 28 H 0.156 0.844 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.404 0.596 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.259 -8.417 8.518 12.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.172 4.172 3 Si 0.771 3.229 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.545 4.545 8 H 0.070 0.930 9 C 0.010 3.990 10 C 0.045 3.955 11 O -0.224 6.224 12 C 0.072 3.928 13 C -0.209 4.209 14 C -0.126 4.126 15 C 0.020 3.980 16 F -0.124 7.124 17 C -0.112 4.112 18 C -0.115 4.115 19 C 0.058 3.942 20 O -0.389 6.389 21 C -0.200 4.200 22 C -0.213 4.213 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.157 0.843 27 H 0.176 0.824 28 H 0.174 0.826 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.255 0.745 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.700 -8.243 8.793 12.172 hybrid contribution 0.352 1.118 -0.357 1.226 sum 2.052 -7.125 8.436 11.231 Atomic orbital electron populations 1.70022 1.06848 1.27642 1.49830 1.25601 0.95604 1.01705 0.94277 0.85743 0.78916 0.79897 0.78328 1.19974 1.20920 1.19590 1.20709 0.93119 0.90223 1.50411 0.92974 1.18861 0.99658 0.92489 0.87942 1.22290 0.89202 0.96129 0.87850 1.86115 1.39144 1.77435 1.19745 1.19170 0.92746 0.94855 0.86028 1.21255 0.95273 1.05771 0.98593 1.21115 1.01167 0.98152 0.92122 1.17599 0.93620 1.05004 0.81801 1.91455 1.88976 1.91108 1.40854 1.20809 0.93864 0.99909 0.96575 1.19062 0.96479 1.02923 0.93034 1.20511 0.88443 0.95881 0.89407 1.86318 1.31825 1.76836 1.43967 1.22713 0.94999 1.03502 0.98830 1.22824 0.96917 0.96695 1.04835 0.92790 0.93485 0.93044 0.84256 0.82385 0.82645 0.91445 0.91882 0.74541 0.90138 0.91146 0.90025 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.17 12.59 21.45 0.27 -48.90 16 2 C 0.03 1.52 5.23 84.65 0.44 1.96 16 3 Si 0.95 42.13 29.55 68.60 2.03 44.16 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.51 -26.83 8.82 25.60 0.23 -26.60 16 8 H 0.05 2.78 7.82 -2.91 -0.02 2.76 16 9 C 0.01 0.52 1.55 -52.93 -0.08 0.43 16 10 C 0.12 5.24 4.57 71.98 0.33 5.57 16 11 O -0.31 -12.68 9.49 -92.90 -0.88 -13.56 16 12 C 0.12 4.23 6.65 22.50 0.15 4.38 16 13 C -0.19 -6.22 9.03 22.36 0.20 -6.01 16 14 C -0.11 -3.03 10.02 22.30 0.22 -2.81 16 15 C 0.04 1.13 7.30 22.37 0.16 1.30 16 16 F -0.15 -4.10 17.27 44.97 0.78 -3.32 16 17 C -0.09 -2.72 9.35 22.30 0.21 -2.51 16 18 C -0.11 -3.61 5.89 -19.77 -0.12 -3.72 16 19 C 0.14 3.64 6.90 71.24 0.49 4.13 16 20 O -0.58 -12.85 12.16 -148.98 -1.81 -14.66 16 21 C -0.16 -7.05 9.88 30.60 0.30 -6.75 16 22 C -0.18 -7.10 9.88 30.60 0.30 -6.80 16 23 H 0.26 13.67 8.32 -92.71 -0.77 12.89 16 24 H 0.05 1.89 7.38 -2.39 -0.02 1.87 16 25 H 0.05 2.51 6.84 -2.39 -0.02 2.49 16 26 H 0.14 4.58 6.32 -2.91 -0.02 4.56 16 27 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 28 H 0.16 4.17 7.02 -2.91 -0.02 4.15 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.40 4.80 9.12 -74.06 -0.68 4.12 16 32 H 0.08 3.19 8.06 -2.39 -0.02 3.17 16 33 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 34 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -58.88 307.08 3.66 -55.22 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.44 Total: 18.50 kcal Atomic # 6 Polarization: -40.28 SS G_CDS: 2.84 Total: -37.43 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.27 Total: -48.90 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -2.69 Total: -28.22 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.32 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -58.88 3.66 -55.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236517588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.575 kcal (2) G-P(sol) polarization free energy of solvation -58.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds