Wall clock time and date at job start Mon Mar 30 2020 06:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35939 * 116.99813 * 2 1 4 4 C 1.38837 * 119.96447 * 0.02562 * 3 2 1 5 5 C 1.37953 * 120.03592 * 179.97438 * 4 3 2 6 6 C 1.39128 * 119.96698 * 0.02562 * 5 4 3 7 7 S 1.76201 * 120.03973 * 180.02562 * 6 5 4 8 8 C 1.76195 * 99.99908 * 85.49015 * 7 6 5 9 9 H 1.08001 * 119.99998 * 5.12471 * 8 7 6 10 10 C 1.38688 * 120.00153 * 185.11573 * 8 7 6 11 11 N 1.31652 * 119.99630 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00120 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47238 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47094 * 120.00068 * 12 10 8 15 15 H 1.48500 * 109.47196 * 240.00248 * 12 10 8 16 16 C 1.39095 * 119.92556 * 0.02562 * 6 5 4 17 17 C 1.37998 * 119.96266 * 359.71662 * 16 6 5 18 18 C 1.50707 * 119.98277 * 180.27767 * 17 16 6 19 19 C 1.53006 * 109.46941 * 0.25672 * 18 17 16 20 20 C 1.52997 * 109.47060 * 120.25586 * 18 17 16 21 21 C 1.52997 * 109.47197 * 240.25947 * 18 17 16 22 22 H 1.08999 * 109.47366 * 299.99858 * 1 2 3 23 23 H 1.09002 * 109.47524 * 59.99837 * 1 2 3 24 24 H 1.08998 * 109.47255 * 180.02562 * 1 2 3 25 25 H 1.08007 * 119.97950 * 359.97438 * 4 3 2 26 26 H 1.08003 * 120.01511 * 180.02562 * 5 4 3 27 27 H 0.97001 * 119.99902 * 180.02562 * 11 10 8 28 28 H 1.08000 * 120.01399 * 179.97438 * 16 6 5 29 29 H 1.09007 * 109.46887 * 60.00063 * 19 18 17 30 30 H 1.09002 * 109.46961 * 179.97438 * 19 18 17 31 31 H 1.08996 * 109.47427 * 300.00380 * 19 18 17 32 32 H 1.09000 * 109.46903 * 60.00610 * 20 18 17 33 33 H 1.09002 * 109.47148 * 180.02562 * 20 18 17 34 34 H 1.08999 * 109.47090 * 300.00321 * 20 18 17 35 35 H 1.09004 * 109.47153 * 59.99816 * 21 18 17 36 36 H 1.09002 * 109.47547 * 179.97438 * 21 18 17 37 37 H 1.08998 * 109.47142 * 300.00248 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2892 2.3751 0.0005 5 6 1.9139 3.6051 0.0011 6 6 3.3032 3.6789 0.0005 7 16 4.1031 5.2489 0.0019 8 6 4.1212 5.5815 1.7321 9 1 3.7732 4.8338 2.4294 10 6 4.5825 6.8034 2.1985 11 7 5.0064 7.7149 1.3485 12 14 4.6023 7.1558 4.0328 13 1 4.0791 5.9771 4.7690 14 1 5.9947 7.4328 4.4686 15 1 3.7496 8.3373 4.3192 16 6 4.0601 2.5119 -0.0011 17 6 3.4321 1.2831 0.0038 18 6 4.2517 0.0184 0.0083 19 6 5.7396 0.3750 0.0130 20 6 3.9195 -0.8001 1.2575 21 6 3.9282 -0.8035 -1.2409 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.2106 2.3175 0.0005 26 1 1.3247 4.5103 0.0019 27 1 5.3294 8.5694 1.6747 28 1 5.1386 2.5675 -0.0019 29 1 5.9701 0.9606 0.9031 30 1 6.3324 -0.5397 0.0168 31 1 5.9763 0.9582 -0.8768 32 1 2.8595 -1.0542 1.2541 33 1 4.5126 -1.7146 1.2611 34 1 4.1499 -0.2145 2.1475 35 1 4.1649 -0.2203 -2.1309 36 1 4.5213 -1.7180 -1.2379 37 1 2.8682 -1.0575 -1.2443 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259039104.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:04 Heat of formation + Delta-G solvation = -32.743340 kcal Electronic energy + Delta-G solvation = -18183.043522 eV Core-core repulsion = 15437.265672 eV Total energy + Delta-G solvation = -2745.777850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.16514 -37.39994 -35.81933 -32.45889 -29.95325 -29.55831 -27.45997 -27.00837 -26.67430 -25.49648 -22.60353 -21.56815 -19.25212 -17.68089 -17.61882 -15.90100 -15.65889 -15.59034 -14.81527 -14.21340 -13.99165 -13.97401 -13.69913 -13.30751 -13.13747 -12.50287 -12.25671 -11.88434 -11.83842 -11.62511 -11.46827 -11.25287 -11.21306 -11.09545 -10.81531 -10.75789 -10.59959 -10.50403 -10.09097 -9.73595 -9.12234 -8.65819 -8.32325 -7.46918 -6.62925 -6.23502 -3.96329 1.81261 1.86124 3.20408 3.23422 3.30116 3.44265 3.61625 4.11746 4.29979 4.86074 5.02513 5.11103 5.13162 5.18255 5.27429 5.32736 5.45337 5.49477 5.56407 5.72188 5.78487 5.83269 5.99973 6.02303 6.06307 6.08861 6.13218 6.22159 6.34418 6.47870 6.55012 6.56227 6.70756 6.83551 7.16306 7.20998 7.62346 7.69774 8.38296 9.21862 10.82582 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022782 B = 0.005593 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.750227 B = 5004.628057 C = 5337.813025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.125 3.875 4 C -0.218 4.218 5 C -0.049 4.049 6 C -0.129 4.129 7 S -0.043 6.043 8 C -0.514 4.514 9 H 0.074 0.926 10 C 0.071 3.929 11 N -0.872 5.872 12 Si 0.918 3.082 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.280 1.280 16 C -0.048 4.048 17 C -0.116 4.116 18 C -0.014 4.014 19 C -0.146 4.146 20 C -0.138 4.138 21 C -0.137 4.137 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.093 0.907 25 H 0.121 0.879 26 H 0.126 0.874 27 H 0.268 0.732 28 H 0.136 0.864 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.574 -15.608 -2.811 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.081 3.919 4 C -0.238 4.238 5 C -0.070 4.070 6 C -0.240 4.240 7 S 0.191 5.809 8 C -0.662 4.662 9 H 0.092 0.908 10 C -0.137 4.137 11 N -0.508 5.508 12 Si 0.744 3.256 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.205 1.205 16 C -0.068 4.068 17 C -0.118 4.118 18 C -0.014 4.014 19 C -0.203 4.203 20 C -0.195 4.195 21 C -0.195 4.195 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.111 0.889 25 H 0.138 0.862 26 H 0.144 0.856 27 H 0.077 0.923 28 H 0.154 0.846 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.989 -14.927 -3.703 16.169 hybrid contribution -0.867 -0.203 2.166 2.342 sum -5.856 -15.130 -1.538 16.296 Atomic orbital electron populations 1.22972 0.79673 1.03111 1.01217 1.86087 1.20276 1.27220 1.89048 1.18775 0.91549 0.83683 0.97936 1.21167 0.99271 0.92578 1.10792 1.21511 0.94285 0.96552 0.94653 1.22650 0.95817 1.01116 1.04395 1.83508 1.73832 1.11404 1.12142 1.22885 1.49217 1.03487 0.90607 0.90753 1.24987 0.94759 0.94935 0.99016 1.70018 1.40383 1.06230 1.34183 0.86111 0.78000 0.78394 0.83064 1.19573 1.20510 1.20546 1.21601 1.00243 0.89914 0.95070 1.19186 0.90049 0.95088 1.07467 1.19254 0.94053 0.92159 0.95971 1.21994 0.94624 1.01210 1.02474 1.21876 1.02198 0.98771 0.96690 1.21874 1.02235 0.98749 0.96595 0.92988 0.92979 0.88881 0.86163 0.85590 0.92258 0.84626 0.92045 0.92802 0.92150 0.91489 0.93124 0.93007 0.93063 0.93129 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.29 6.14 -19.55 -0.12 -4.41 16 3 C 0.13 2.05 6.29 -39.16 -0.25 1.80 16 4 C -0.22 -3.65 9.03 -39.46 -0.36 -4.01 16 5 C -0.05 -0.97 9.79 -39.36 -0.39 -1.36 16 6 C -0.13 -2.84 5.46 -38.93 -0.21 -3.06 16 7 S -0.04 -1.13 21.41 -107.50 -2.30 -3.43 16 8 C -0.51 -14.66 9.46 30.90 0.29 -14.37 16 9 H 0.07 2.12 7.79 -52.49 -0.41 1.71 16 10 C 0.07 2.02 5.49 -17.46 -0.10 1.92 16 11 N -0.87 -25.67 13.22 55.48 0.73 -24.94 16 12 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 C -0.05 -0.94 8.72 -39.35 -0.34 -1.28 16 17 C -0.12 -1.97 4.77 -104.50 -0.50 -2.47 16 18 C -0.01 -0.20 0.75 -155.66 -0.12 -0.32 16 19 C -0.15 -1.96 7.13 37.16 0.27 -1.69 16 20 C -0.14 -1.83 8.26 37.16 0.31 -1.52 16 21 C -0.14 -1.74 8.26 37.16 0.31 -1.44 16 22 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 23 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 24 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.12 1.66 6.29 -52.48 -0.33 1.33 16 26 H 0.13 2.45 8.06 -52.48 -0.42 2.03 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.14 2.60 5.89 -52.49 -0.31 2.29 16 29 H 0.06 0.88 7.52 -51.93 -0.39 0.49 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.81 7.50 -51.93 -0.39 0.43 16 32 H 0.07 0.90 6.13 -51.93 -0.32 0.58 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.87 6.13 -51.93 -0.32 0.55 16 LS Contribution 312.64 15.07 4.71 4.71 Total: -1.00 -30.71 312.64 -7.45 -38.15 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -5.35 Total: -0.08 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: -0.09 Total: -26.54 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.73 Total: -24.94 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.12 Total: -4.41 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.30 Total: -3.43 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.71 -7.45 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259039104.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.408 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds