Wall clock time and date at job start Mon Mar 30 2020 07:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99767 * 2 1 4 4 H 1.48493 * 109.46994 * 269.99445 * 3 2 1 5 5 H 1.48498 * 109.47494 * 29.99690 * 3 2 1 6 6 H 1.48504 * 109.46850 * 149.99900 * 3 2 1 7 7 C 1.37877 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00241 * 0.02562 * 7 2 1 10 10 H 1.09003 * 108.13876 * 338.93012 * 9 7 2 11 11 C 1.45387 * 108.24433 * 95.98660 * 9 7 2 12 12 C 1.55293 * 109.84930 * 184.98737 * 11 9 7 13 13 S 1.79391 * 109.72752 * 288.76698 * 12 11 9 14 14 C 1.82417 * 106.81099 * 86.88796 * 13 12 11 15 15 C 1.54643 * 110.54054 * 319.26473 * 14 13 12 16 16 N 1.45589 * 108.47313 * 321.26066 * 15 14 13 17 17 C 1.46899 * 111.00033 * 227.97173 * 16 15 14 18 18 C 1.50709 * 109.47016 * 65.45987 * 17 16 15 19 19 C 1.40887 * 126.28897 * 269.68979 * 18 17 16 20 20 C 1.34858 * 107.41358 * 179.83105 * 19 18 17 21 21 N 1.36336 * 108.21782 * 0.42862 * 20 19 18 22 22 H 0.97003 * 125.63854 * 179.68395 * 21 20 19 23 23 C 1.34851 * 126.29113 * 90.00196 * 18 17 16 24 24 H 0.97000 * 120.00100 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.41126 * 305.10459 * 11 9 7 26 26 H 1.08998 * 109.40762 * 64.87267 * 11 9 7 27 27 H 1.08997 * 109.42912 * 48.85103 * 12 11 9 28 28 H 1.09004 * 109.43066 * 168.68716 * 12 11 9 29 29 H 1.09003 * 109.26511 * 198.98930 * 14 13 12 30 30 H 1.09002 * 109.23443 * 79.51497 * 14 13 12 31 31 H 1.08999 * 109.63597 * 201.56854 * 15 14 13 32 32 H 1.08994 * 109.80530 * 81.05793 * 15 14 13 33 33 H 1.08997 * 109.47288 * 185.45268 * 17 16 15 34 34 H 1.08996 * 109.47267 * 305.46201 * 17 16 15 35 35 H 1.07994 * 126.29727 * 359.95954 * 19 18 17 36 36 H 1.07996 * 125.89183 * 180.15425 * 20 19 18 37 37 H 1.08005 * 125.89091 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.2441 -2.3097 0.3725 11 6 1.1487 -2.9657 -1.3727 12 6 0.2700 -4.2447 -1.4309 13 16 1.1589 -5.6237 -0.7054 14 6 0.8236 -5.5829 1.0872 15 6 0.8496 -4.1282 1.6112 16 7 1.9217 -3.4130 0.9337 17 6 2.7486 -2.6708 1.8945 18 6 3.4638 -3.6425 2.7976 19 6 2.9895 -4.1430 4.0263 20 6 3.9277 -4.9829 4.5091 21 7 4.9679 -5.0118 3.6281 22 1 5.7803 -5.5319 3.7298 23 6 4.6778 -4.1881 2.5811 24 1 -0.4850 0.8400 -0.0004 25 1 0.6964 -2.1872 -1.9870 26 1 2.1446 -3.1928 -1.7532 27 1 -0.6530 -4.0761 -0.8762 28 1 0.0311 -4.4735 -2.4696 29 1 1.5826 -6.1665 1.6084 30 1 -0.1579 -6.0166 1.2790 31 1 1.0319 -4.1291 2.6858 32 1 -0.1037 -3.6432 1.4018 33 1 3.4807 -2.0696 1.3555 34 1 2.1129 -2.0186 2.4934 35 1 2.0470 -3.9004 4.4943 36 1 3.8676 -5.5338 5.4360 37 1 5.3113 -4.0041 1.7259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259628753.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:12 Heat of formation + Delta-G solvation = 69.547387 kcal Electronic energy + Delta-G solvation = -18924.810816 eV Core-core repulsion = 16215.761376 eV Total energy + Delta-G solvation = -2709.049440 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.62083 -37.81861 -33.32116 -32.03231 -30.96191 -29.76621 -28.41597 -26.36604 -24.70520 -22.93283 -21.55458 -20.20108 -19.35662 -18.76838 -17.62696 -16.34236 -15.64883 -15.02291 -14.27599 -14.08682 -13.64515 -13.62676 -13.28360 -13.23911 -12.95392 -12.52903 -12.30412 -12.05315 -11.84247 -11.40909 -11.20373 -10.95149 -10.74554 -10.62649 -10.38336 -9.98634 -9.78191 -9.72097 -8.91025 -8.70208 -8.52198 -8.21556 -7.64182 -7.19642 -6.56060 -6.08371 -4.12256 2.57660 2.70548 3.27081 3.34546 3.37667 3.46934 3.54255 3.72633 4.37915 5.17282 5.35176 5.45121 5.67742 5.69176 5.80194 5.84688 5.87577 5.96085 6.06058 6.22924 6.34285 6.37495 6.45391 6.62040 6.66124 6.95360 6.98056 7.01328 7.16169 7.44147 7.49700 7.65295 7.78519 7.87202 7.98434 8.05948 8.34668 8.63450 9.01082 9.52647 10.99354 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.008964 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.392837 B = 3122.888755 C = 4492.110147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.064 0.936 9 C 0.169 3.831 10 H 0.044 0.956 11 C -0.070 4.070 12 C -0.088 4.088 13 S -0.263 6.263 14 C -0.059 4.059 15 C 0.033 3.967 16 N -0.493 5.493 17 C 0.139 3.861 18 C -0.143 4.143 19 C -0.195 4.195 20 C -0.032 4.032 21 N -0.567 5.567 22 H 0.407 0.593 23 C -0.005 4.005 24 H 0.261 0.739 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.034 0.966 35 H 0.126 0.874 36 H 0.153 0.847 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.766 -9.188 5.369 11.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.082 0.918 9 C 0.063 3.937 10 H 0.061 0.939 11 C -0.110 4.110 12 C -0.236 4.236 13 S -0.037 6.037 14 C -0.208 4.208 15 C -0.098 4.098 16 N -0.217 5.217 17 C 0.011 3.989 18 C -0.150 4.150 19 C -0.221 4.221 20 C -0.162 4.162 21 N -0.163 5.163 22 H 0.242 0.758 23 C -0.136 4.136 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.052 0.948 35 H 0.144 0.856 36 H 0.171 0.829 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.654 -10.182 4.585 12.517 hybrid contribution -0.633 2.192 1.194 2.575 sum 5.021 -7.991 5.780 11.067 Atomic orbital electron populations 1.69910 1.05953 1.26741 1.50647 1.24969 0.94828 0.99244 0.94759 0.86617 0.79982 0.83464 0.78160 1.20644 1.21363 1.19710 1.21398 0.93354 0.90213 1.50967 0.91789 1.18435 0.95688 0.89476 0.90115 0.93863 1.20751 0.97690 0.92767 0.99831 1.23707 1.00625 0.97947 1.01358 1.85330 1.72822 1.39005 1.06593 1.23871 1.02459 1.00621 0.93865 1.22752 0.95310 0.93078 0.98652 1.63362 1.17735 1.26435 1.14120 1.20374 0.96049 0.91431 0.91039 1.19901 0.95369 1.03075 0.96676 1.20856 1.00145 1.02952 0.98149 1.21637 0.90525 1.06516 0.97550 1.41910 1.17416 1.38120 1.18805 0.75770 1.21662 0.99602 0.98767 0.93568 0.92870 0.91568 0.92367 0.91272 0.89842 0.89378 0.92008 0.91533 0.93460 0.89270 0.94786 0.85583 0.82913 0.82315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.97 12.69 55.43 0.70 -24.26 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.78 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.45 6.30 -34.44 -0.22 -13.67 16 8 H 0.06 1.66 6.17 -52.49 -0.32 1.34 16 9 C 0.17 4.03 1.72 -72.49 -0.12 3.90 16 10 H 0.04 1.17 5.43 -51.93 -0.28 0.89 16 11 C -0.07 -1.57 4.90 -29.10 -0.14 -1.71 16 12 C -0.09 -1.71 5.97 38.37 0.23 -1.48 16 13 S -0.26 -4.96 21.11 -107.50 -2.27 -7.23 16 14 C -0.06 -1.03 6.84 38.02 0.26 -0.77 16 15 C 0.03 0.65 5.11 -3.67 -0.02 0.63 16 16 N -0.49 -10.45 3.91 -233.94 -0.92 -11.37 16 17 C 0.14 2.90 4.22 -4.97 -0.02 2.88 16 18 C -0.14 -2.55 5.12 -104.82 -0.54 -3.09 16 19 C -0.20 -3.11 9.38 -39.78 -0.37 -3.48 16 20 C -0.03 -0.42 11.94 -16.75 -0.20 -0.62 16 21 N -0.57 -7.06 6.07 -12.85 -0.08 -7.14 16 22 H 0.41 3.59 8.96 -40.82 -0.37 3.23 16 23 C -0.01 -0.08 11.85 -16.75 -0.20 -0.28 16 24 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.07 1.58 8.08 -51.93 -0.42 1.16 16 26 H 0.06 1.33 8.12 -51.93 -0.42 0.90 16 27 H 0.07 1.37 7.99 -51.78 -0.41 0.96 16 28 H 0.08 1.47 8.14 -51.78 -0.42 1.05 16 29 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.24 5.23 -51.93 -0.27 0.96 16 32 H 0.05 1.01 6.42 -51.93 -0.33 0.67 16 33 H 0.09 1.98 5.76 -51.93 -0.30 1.68 16 34 H 0.03 0.78 8.05 -51.93 -0.42 0.36 16 35 H 0.13 1.94 7.59 -52.49 -0.40 1.54 16 36 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.16 2.28 8.06 -52.48 -0.42 1.85 16 LS Contribution 300.14 15.07 4.52 4.52 Total: -1.00 -28.44 300.14 -9.69 -38.13 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.19 Total: 7.65 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -1.44 Total: -16.09 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -0.29 Total: -42.77 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -4.96 SS G_CDS: -2.27 Total: -7.23 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.44 -9.69 -38.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259628753.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.680 kcal (2) G-P(sol) polarization free energy of solvation -28.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds