Wall clock time and date at job start Mon Mar 30 2020 07:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99767 * 2 1 4 4 H 1.48493 * 109.46994 * 269.99445 * 3 2 1 5 5 H 1.48498 * 109.47494 * 29.99690 * 3 2 1 6 6 H 1.48504 * 109.46850 * 149.99900 * 3 2 1 7 7 C 1.37877 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00241 * 0.02562 * 7 2 1 10 10 H 1.09003 * 108.13876 * 338.93012 * 9 7 2 11 11 C 1.45387 * 108.24433 * 95.98660 * 9 7 2 12 12 C 1.55293 * 109.84930 * 184.98737 * 11 9 7 13 13 S 1.79391 * 109.72752 * 288.76698 * 12 11 9 14 14 C 1.82417 * 106.81099 * 86.88796 * 13 12 11 15 15 C 1.54643 * 110.54054 * 319.26473 * 14 13 12 16 16 N 1.45589 * 108.47313 * 321.26066 * 15 14 13 17 17 C 1.46899 * 111.00033 * 227.97173 * 16 15 14 18 18 C 1.50709 * 109.47016 * 65.45987 * 17 16 15 19 19 C 1.40887 * 126.28897 * 269.68979 * 18 17 16 20 20 C 1.34858 * 107.41358 * 179.83105 * 19 18 17 21 21 N 1.36336 * 108.21782 * 0.42862 * 20 19 18 22 22 H 0.97003 * 125.63854 * 179.68395 * 21 20 19 23 23 C 1.34851 * 126.29113 * 90.00196 * 18 17 16 24 24 H 0.97000 * 120.00100 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.41126 * 305.10459 * 11 9 7 26 26 H 1.08998 * 109.40762 * 64.87267 * 11 9 7 27 27 H 1.08997 * 109.42912 * 48.85103 * 12 11 9 28 28 H 1.09004 * 109.43066 * 168.68716 * 12 11 9 29 29 H 1.09003 * 109.26511 * 198.98930 * 14 13 12 30 30 H 1.09002 * 109.23443 * 79.51497 * 14 13 12 31 31 H 1.08999 * 109.63597 * 201.56854 * 15 14 13 32 32 H 1.08994 * 109.80530 * 81.05793 * 15 14 13 33 33 H 1.08997 * 109.47288 * 185.45268 * 17 16 15 34 34 H 1.08996 * 109.47267 * 305.46201 * 17 16 15 35 35 H 1.07994 * 126.29727 * 359.95954 * 19 18 17 36 36 H 1.07996 * 125.89183 * 180.15425 * 20 19 18 37 37 H 1.08005 * 125.89091 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.2441 -2.3097 0.3725 11 6 1.1487 -2.9657 -1.3727 12 6 0.2700 -4.2447 -1.4309 13 16 1.1589 -5.6237 -0.7054 14 6 0.8236 -5.5829 1.0872 15 6 0.8496 -4.1282 1.6112 16 7 1.9217 -3.4130 0.9337 17 6 2.7486 -2.6708 1.8945 18 6 3.4638 -3.6425 2.7976 19 6 2.9895 -4.1430 4.0263 20 6 3.9277 -4.9829 4.5091 21 7 4.9679 -5.0118 3.6281 22 1 5.7803 -5.5319 3.7298 23 6 4.6778 -4.1881 2.5811 24 1 -0.4850 0.8400 -0.0004 25 1 0.6964 -2.1872 -1.9870 26 1 2.1446 -3.1928 -1.7532 27 1 -0.6530 -4.0761 -0.8762 28 1 0.0311 -4.4735 -2.4696 29 1 1.5826 -6.1665 1.6084 30 1 -0.1579 -6.0166 1.2790 31 1 1.0319 -4.1291 2.6858 32 1 -0.1037 -3.6432 1.4018 33 1 3.4807 -2.0696 1.3555 34 1 2.1129 -2.0186 2.4934 35 1 2.0470 -3.9004 4.4943 36 1 3.8676 -5.5338 5.4360 37 1 5.3113 -4.0041 1.7259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259628753.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:12 Heat of formation + Delta-G solvation = 52.691516 kcal Electronic energy + Delta-G solvation = -18925.541741 eV Core-core repulsion = 16215.761376 eV Total energy + Delta-G solvation = -2709.780366 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.80272 -39.56334 -35.12854 -33.86842 -32.46808 -31.18879 -29.70977 -28.15792 -26.35368 -24.70186 -23.11439 -21.45021 -21.10425 -20.08686 -18.92913 -18.18598 -17.35466 -16.71956 -16.07862 -15.77474 -15.27161 -15.12057 -14.67359 -14.43342 -14.34727 -14.07871 -13.77045 -13.66156 -13.60072 -13.02231 -12.83304 -12.69580 -12.49506 -12.45994 -11.99479 -11.83042 -11.55184 -11.45884 -10.72330 -10.58839 -10.39338 -9.43823 -8.99599 -8.79829 -8.19282 -8.08807 -6.23485 1.05834 1.38378 1.40109 1.49386 1.57752 2.00176 2.17760 2.40261 2.71856 3.15513 3.66827 4.12918 4.19524 4.24694 4.32420 4.43816 4.49027 4.61676 4.65606 4.71365 4.81908 4.86589 4.96037 5.06789 5.08703 5.22161 5.29778 5.41117 5.57511 5.67789 5.71436 5.93100 6.15806 6.20728 6.39191 6.47623 6.80422 6.98348 7.02176 7.44027 8.92528 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.008964 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.392837 B = 3122.888755 C = 4492.110147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.016 3.984 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.177 3.823 10 H 0.008 0.992 11 C -0.064 4.064 12 C -0.081 4.081 13 S -0.258 6.258 14 C -0.051 4.051 15 C 0.036 3.964 16 N -0.487 5.487 17 C 0.151 3.849 18 C -0.175 4.175 19 C -0.226 4.226 20 C -0.005 4.005 21 N -0.548 5.548 22 H 0.429 0.571 23 C -0.005 4.005 24 H 0.260 0.740 25 H 0.043 0.957 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.024 0.976 33 H 0.068 0.932 34 H 0.000 1.000 35 H 0.122 0.878 36 H 0.194 0.806 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.308 -11.147 6.389 14.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.183 4.183 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.077 0.923 9 C 0.070 3.930 10 H 0.026 0.974 11 C -0.105 4.105 12 C -0.230 4.230 13 S -0.032 6.032 14 C -0.199 4.199 15 C -0.095 4.095 16 N -0.210 5.210 17 C 0.023 3.977 18 C -0.182 4.182 19 C -0.251 4.251 20 C -0.137 4.137 21 N -0.145 5.145 22 H 0.268 0.732 23 C -0.137 4.137 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.018 0.982 35 H 0.140 0.860 36 H 0.211 0.789 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 7.234 -12.172 5.611 15.230 hybrid contribution -1.068 2.749 0.950 3.098 sum 6.165 -9.423 6.560 13.032 Atomic orbital electron populations 1.70034 1.07233 1.27235 1.52132 1.25653 0.95512 1.02275 0.94823 0.85702 0.78895 0.79785 0.78246 1.20084 1.21384 1.19129 1.21655 0.93242 0.91434 1.49940 0.92276 1.18311 0.93723 0.89671 0.91300 0.97430 1.20556 0.97828 0.93756 0.98334 1.23564 0.99656 0.96856 1.02907 1.85289 1.72848 1.37640 1.07432 1.23853 1.04225 0.98955 0.92914 1.22689 0.93483 0.94016 0.99268 1.63443 1.17894 1.25389 1.14239 1.20107 0.95000 0.91936 0.90708 1.19644 0.96778 1.04278 0.97518 1.20915 1.01332 1.04802 0.98067 1.22137 0.89028 1.04490 0.97997 1.41881 1.18068 1.37043 1.17487 0.73213 1.21686 0.98776 0.98766 0.94505 0.93060 0.93865 0.92847 0.91932 0.87670 0.88195 0.89724 0.90593 0.95812 0.91411 0.98196 0.85999 0.78874 0.81523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.78 12.69 21.45 0.27 -53.51 16 2 C 0.02 0.89 5.46 84.65 0.46 1.35 16 3 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.52 -28.13 6.30 25.60 0.16 -27.97 16 8 H 0.06 3.18 6.17 -2.91 -0.02 3.16 16 9 C 0.18 8.76 1.72 41.86 0.07 8.83 16 10 H 0.01 0.45 5.43 -2.39 -0.01 0.44 16 11 C -0.06 -2.96 4.90 29.06 0.14 -2.81 16 12 C -0.08 -3.14 5.97 72.77 0.43 -2.71 16 13 S -0.26 -9.31 21.11 -56.49 -1.19 -10.51 16 14 C -0.05 -1.68 6.84 72.54 0.50 -1.19 16 15 C 0.04 1.43 5.11 87.11 0.45 1.87 16 16 N -0.49 -21.06 3.91 -894.05 -3.50 -24.55 16 17 C 0.15 6.50 4.22 85.56 0.36 6.86 16 18 C -0.18 -6.13 5.12 -19.99 -0.10 -6.23 16 19 C -0.23 -6.84 9.38 22.14 0.21 -6.63 16 20 C -0.01 -0.11 11.94 83.22 0.99 0.88 16 21 N -0.55 -11.60 6.07 -194.56 -1.18 -12.78 16 22 H 0.43 5.63 8.96 -92.71 -0.83 4.80 16 23 C -0.01 -0.15 11.85 83.21 0.99 0.84 16 24 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 25 H 0.04 2.15 8.08 -2.39 -0.02 2.13 16 26 H 0.05 2.47 8.12 -2.39 -0.02 2.45 16 27 H 0.06 2.49 7.99 -2.48 -0.02 2.47 16 28 H 0.11 3.59 8.14 -2.48 -0.02 3.57 16 29 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.08 2.84 5.23 -2.39 -0.01 2.82 16 32 H 0.02 1.05 6.42 -2.39 -0.02 1.03 16 33 H 0.07 3.14 5.76 -2.39 -0.01 3.13 16 34 H 0.00 -0.02 8.05 -2.39 -0.02 -0.03 16 35 H 0.12 3.69 7.59 -2.91 -0.02 3.67 16 36 H 0.19 2.76 8.06 -2.91 -0.02 2.73 16 37 H 0.17 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -63.14 300.14 1.33 -61.81 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.24 Total: 20.66 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 4.66 Total: -26.90 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -4.41 Total: -90.85 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -9.31 SS G_CDS: -1.19 Total: -10.51 kcal Total: -63.14 1.33 -61.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259628753.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.504 kcal (2) G-P(sol) polarization free energy of solvation -63.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds