Wall clock time and date at job start Mon Mar 30 2020 07:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48502 * 109.46871 * 270.00307 * 3 2 1 5 5 H 1.48503 * 109.46875 * 30.00164 * 3 2 1 6 6 H 1.48498 * 109.47090 * 150.00206 * 3 2 1 7 7 C 1.37875 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00212 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99933 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47339 * 185.18040 * 9 7 2 11 11 H 1.09004 * 109.45293 * 301.83255 * 10 9 7 12 12 C 1.53030 * 109.46123 * 61.80428 * 10 9 7 13 13 C 1.53124 * 109.27908 * 179.19611 * 12 10 9 14 14 C 1.53119 * 109.15897 * 302.34720 * 13 12 10 15 15 C 1.53039 * 109.27644 * 57.65649 * 14 13 12 16 16 N 1.46848 * 109.52097 * 300.81248 * 15 14 13 17 17 C 1.46896 * 110.99940 * 185.83874 * 16 15 14 18 18 C 1.50702 * 109.46829 * 69.99448 * 17 16 15 19 19 C 1.33639 * 126.03853 * 90.00121 * 18 17 16 20 20 N 1.31782 * 114.50183 * 180.02562 * 19 18 17 21 21 C 1.29031 * 117.12433 * 359.97438 * 20 19 18 22 22 S 1.70977 * 110.16564 * 359.73027 * 21 20 19 23 23 H 0.97000 * 119.99836 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47135 * 65.17882 * 9 7 2 25 25 H 1.08994 * 109.47385 * 305.18208 * 9 7 2 26 26 H 1.09000 * 109.50795 * 299.13632 * 12 10 9 27 27 H 1.09002 * 109.50520 * 59.25589 * 12 10 9 28 28 H 1.08995 * 109.52497 * 182.44247 * 13 12 10 29 29 H 1.09005 * 109.57240 * 62.28094 * 13 12 10 30 30 H 1.08988 * 109.50321 * 297.71113 * 14 13 12 31 31 H 1.09004 * 109.53081 * 177.60854 * 14 13 12 32 32 H 1.09006 * 109.46182 * 180.80319 * 15 14 13 33 33 H 1.08994 * 109.45684 * 60.83103 * 15 14 13 34 34 H 1.08998 * 109.47229 * 189.99234 * 17 16 15 35 35 H 1.09005 * 109.47599 * 309.99381 * 17 16 15 36 36 H 1.07998 * 122.74932 * 359.97438 * 19 18 17 37 37 H 1.07997 * 124.91858 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6306 -0.1319 11 1 3.6318 -3.2305 0.6906 12 6 3.5483 -3.2205 -1.4622 13 6 4.0776 -4.6509 -1.5978 14 6 5.6056 -4.6327 -1.5000 15 6 6.0192 -4.0018 -0.1685 16 7 5.4894 -2.6346 -0.0877 17 6 5.9817 -1.9495 1.1148 18 6 7.4536 -1.6642 0.9632 19 6 7.9902 -0.5603 0.4347 20 7 9.3078 -0.5490 0.4140 21 6 9.9126 -1.5818 0.8960 22 16 8.7713 -2.7239 1.4586 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.7628 0.9316 25 1 3.8746 -0.6018 -0.8410 26 1 2.4586 -3.2318 -1.4883 27 1 3.9262 -2.6132 -2.2847 28 1 3.7793 -5.0598 -2.5631 29 1 3.6688 -5.2689 -0.7983 30 1 6.0159 -4.0476 -2.3230 31 1 5.9864 -5.6527 -1.5533 32 1 7.1069 -3.9743 -0.1019 33 1 5.6200 -4.5953 0.6540 34 1 5.4415 -1.0119 1.2456 35 1 5.8226 -2.5850 1.9860 36 1 7.3929 0.2555 0.0549 37 1 10.9845 -1.7049 0.9422 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259880228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:43 Heat of formation + Delta-G solvation = 41.005713 kcal Electronic energy + Delta-G solvation = -18397.429381 eV Core-core repulsion = 15687.142281 eV Total energy + Delta-G solvation = -2710.287100 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.68839 -38.74205 -33.92363 -33.43837 -31.44349 -30.32811 -27.67979 -26.55069 -24.34386 -23.43166 -22.30192 -20.27941 -19.88600 -19.03635 -17.97566 -16.97998 -15.70305 -15.49338 -14.58662 -14.26823 -14.16710 -14.02977 -13.88484 -13.59596 -13.36611 -12.83263 -12.66798 -12.43439 -11.86841 -11.71239 -11.55025 -11.03721 -10.88083 -10.69814 -10.41769 -10.09116 -10.02223 -9.78215 -9.65221 -9.49451 -9.28473 -9.10298 -8.82061 -8.54629 -7.92162 -6.07262 -4.05180 0.73685 1.36645 1.75430 2.90080 3.30000 3.37929 3.40004 4.29325 4.37691 4.42834 4.97109 5.13297 5.17102 5.25664 5.25990 5.34013 5.41192 5.65676 5.75195 5.86973 5.90156 5.94173 6.07130 6.12415 6.23657 6.27738 6.33183 6.37657 6.67053 6.80046 6.99827 7.07933 7.24891 7.47991 7.60112 7.72109 7.81594 8.49630 8.96672 9.55045 11.05755 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018401 B = 0.006608 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.265979 B = 4236.149094 C = 5427.280168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.074 0.926 9 C -0.008 4.008 10 C 0.102 3.898 11 H 0.035 0.965 12 C -0.100 4.100 13 C -0.124 4.124 14 C -0.112 4.112 15 C 0.052 3.948 16 N -0.531 5.531 17 C 0.118 3.882 18 C -0.185 4.185 19 C 0.039 3.961 20 N -0.469 5.469 21 C 0.008 3.992 22 S 0.099 5.901 23 H 0.263 0.737 24 H 0.015 0.985 25 H 0.023 0.977 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.113 0.887 35 H 0.044 0.956 36 H 0.177 0.823 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.715 -7.589 1.546 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.092 0.908 9 C -0.045 4.045 10 C -0.005 4.005 11 H 0.053 0.947 12 C -0.138 4.138 13 C -0.161 4.161 14 C -0.150 4.150 15 C -0.077 4.077 16 N -0.256 5.256 17 C -0.011 4.011 18 C -0.306 4.306 19 C -0.111 4.111 20 N -0.182 5.182 21 C -0.290 4.290 22 S 0.350 5.650 23 H 0.073 0.927 24 H 0.033 0.967 25 H 0.042 0.958 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.131 0.869 35 H 0.062 0.938 36 H 0.194 0.806 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 17.156 -7.737 1.391 18.872 hybrid contribution -0.290 1.154 0.358 1.243 sum 16.866 -6.583 1.749 18.190 Atomic orbital electron populations 1.69904 1.06285 1.26908 1.50976 1.24981 0.94675 0.99041 0.94530 0.86811 0.80281 0.83762 0.78609 1.20215 1.21514 1.19103 1.21031 0.89039 0.94467 1.50968 0.90828 1.19736 0.97043 0.91261 0.96469 1.21614 0.82827 0.99268 0.96793 0.94701 1.21533 1.01535 0.93603 0.97097 1.21661 0.95000 0.98461 1.01006 1.21539 0.96669 0.99321 0.97473 1.22152 0.99271 0.89085 0.97148 1.61991 1.10867 1.15820 1.36962 1.20654 0.86817 1.01724 0.91946 1.26054 1.00201 0.97540 1.06788 1.21785 0.88990 0.99218 1.01125 1.66331 1.09389 1.25208 1.17250 1.28277 1.04609 0.93220 1.02924 1.83957 0.98846 1.24059 1.58155 0.92713 0.96661 0.95848 0.90005 0.91836 0.92400 0.92732 0.91439 0.92367 0.91555 0.95387 0.86946 0.93768 0.80569 0.78873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.34 27.37 -169.99 -4.65 16.69 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.16 6.69 56.52 0.38 -5.78 16 7 C -0.52 -14.00 8.85 -34.44 -0.30 -14.31 16 8 H 0.07 2.14 7.28 -52.49 -0.38 1.76 16 9 C -0.01 -0.17 3.25 -27.88 -0.09 -0.26 16 10 C 0.10 1.96 1.90 -67.72 -0.13 1.83 16 11 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 12 C -0.10 -1.83 5.13 -26.65 -0.14 -1.96 16 13 C -0.12 -1.83 6.00 -26.61 -0.16 -1.99 16 14 C -0.11 -1.52 6.09 -26.65 -0.16 -1.68 16 15 C 0.05 0.74 5.31 -3.83 -0.02 0.72 16 16 N -0.53 -8.87 4.45 -228.12 -1.02 -9.88 16 17 C 0.12 1.85 5.29 -4.98 -0.03 1.82 16 18 C -0.18 -2.61 5.45 -35.92 -0.20 -2.80 16 19 C 0.04 0.58 11.25 -19.18 -0.22 0.36 16 20 N -0.47 -6.66 10.54 -15.75 -0.17 -6.83 16 21 C 0.01 0.09 12.23 51.59 0.63 0.72 16 22 S 0.10 1.10 21.80 -107.50 -2.34 -1.24 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.02 0.35 5.34 -51.93 -0.28 0.07 16 25 H 0.02 0.55 7.28 -51.93 -0.38 0.17 16 26 H 0.08 1.66 6.87 -51.93 -0.36 1.30 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.95 8.14 -51.94 -0.42 0.53 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.89 5.98 -51.93 -0.31 0.58 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.11 1.91 5.43 -51.93 -0.28 1.63 16 35 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.18 2.54 8.06 -52.49 -0.42 2.11 16 37 H 0.19 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 302.92 15.07 4.56 4.56 Total: -1.00 -29.81 302.92 -9.12 -38.93 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.37 Total: -0.14 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -0.91 Total: -15.69 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.41 Total: -43.11 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.65 Total: 16.69 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.34 Total: -1.24 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.81 -9.12 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259880228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.935 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds