Wall clock time and date at job start Mon Mar 30 2020 07:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48502 * 109.46871 * 270.00307 * 3 2 1 5 5 H 1.48503 * 109.46875 * 30.00164 * 3 2 1 6 6 H 1.48498 * 109.47090 * 150.00206 * 3 2 1 7 7 C 1.37875 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00212 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99933 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47339 * 185.18040 * 9 7 2 11 11 H 1.09004 * 109.45293 * 301.83255 * 10 9 7 12 12 C 1.53030 * 109.46123 * 61.80428 * 10 9 7 13 13 C 1.53124 * 109.27908 * 179.19611 * 12 10 9 14 14 C 1.53119 * 109.15897 * 302.34720 * 13 12 10 15 15 C 1.53039 * 109.27644 * 57.65649 * 14 13 12 16 16 N 1.46848 * 109.52097 * 300.81248 * 15 14 13 17 17 C 1.46896 * 110.99940 * 185.83874 * 16 15 14 18 18 C 1.50702 * 109.46829 * 69.99448 * 17 16 15 19 19 C 1.33639 * 126.03853 * 90.00121 * 18 17 16 20 20 N 1.31782 * 114.50183 * 180.02562 * 19 18 17 21 21 C 1.29031 * 117.12433 * 359.97438 * 20 19 18 22 22 S 1.70977 * 110.16564 * 359.73027 * 21 20 19 23 23 H 0.97000 * 119.99836 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47135 * 65.17882 * 9 7 2 25 25 H 1.08994 * 109.47385 * 305.18208 * 9 7 2 26 26 H 1.09000 * 109.50795 * 299.13632 * 12 10 9 27 27 H 1.09002 * 109.50520 * 59.25589 * 12 10 9 28 28 H 1.08995 * 109.52497 * 182.44247 * 13 12 10 29 29 H 1.09005 * 109.57240 * 62.28094 * 13 12 10 30 30 H 1.08988 * 109.50321 * 297.71113 * 14 13 12 31 31 H 1.09004 * 109.53081 * 177.60854 * 14 13 12 32 32 H 1.09006 * 109.46182 * 180.80319 * 15 14 13 33 33 H 1.08994 * 109.45684 * 60.83103 * 15 14 13 34 34 H 1.08998 * 109.47229 * 189.99234 * 17 16 15 35 35 H 1.09005 * 109.47599 * 309.99381 * 17 16 15 36 36 H 1.07998 * 122.74932 * 359.97438 * 19 18 17 37 37 H 1.07997 * 124.91858 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6306 -0.1319 11 1 3.6318 -3.2305 0.6906 12 6 3.5483 -3.2205 -1.4622 13 6 4.0776 -4.6509 -1.5978 14 6 5.6056 -4.6327 -1.5000 15 6 6.0192 -4.0018 -0.1685 16 7 5.4894 -2.6346 -0.0877 17 6 5.9817 -1.9495 1.1148 18 6 7.4536 -1.6642 0.9632 19 6 7.9902 -0.5603 0.4347 20 7 9.3078 -0.5490 0.4140 21 6 9.9126 -1.5818 0.8960 22 16 8.7713 -2.7239 1.4586 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.7628 0.9316 25 1 3.8746 -0.6018 -0.8410 26 1 2.4586 -3.2318 -1.4883 27 1 3.9262 -2.6132 -2.2847 28 1 3.7793 -5.0598 -2.5631 29 1 3.6688 -5.2689 -0.7983 30 1 6.0159 -4.0476 -2.3230 31 1 5.9864 -5.6527 -1.5533 32 1 7.1069 -3.9743 -0.1019 33 1 5.6200 -4.5953 0.6540 34 1 5.4415 -1.0119 1.2456 35 1 5.8226 -2.5850 1.9860 36 1 7.3929 0.2555 0.0549 37 1 10.9845 -1.7049 0.9422 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259880228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:42 Heat of formation + Delta-G solvation = 21.764836 kcal Electronic energy + Delta-G solvation = -18398.263728 eV Core-core repulsion = 15687.142281 eV Total energy + Delta-G solvation = -2711.121447 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.78676 -40.00213 -35.35783 -35.13176 -33.23914 -31.45964 -29.36625 -27.67067 -25.44908 -25.18283 -23.57016 -21.78301 -20.94965 -20.41889 -19.03405 -18.95516 -16.95563 -16.72591 -16.36446 -15.57716 -15.37319 -15.18583 -15.11182 -14.86721 -14.73459 -14.59179 -14.07628 -13.68676 -13.47835 -13.14208 -12.96943 -12.55228 -12.30265 -12.15956 -11.88026 -11.79263 -11.54536 -11.50136 -11.08572 -10.93039 -10.71158 -10.60734 -10.19784 -9.83326 -9.24524 -8.27387 -6.29326 -0.22355 0.42904 0.80506 1.35717 1.36874 1.47710 1.87949 2.36121 3.01672 3.08313 3.47633 3.83799 3.92222 4.01810 4.07553 4.19610 4.32600 4.42040 4.46417 4.58954 4.67611 4.71116 4.79195 4.86316 4.95971 5.09671 5.11495 5.16746 5.21556 5.31803 5.37807 5.47390 5.55874 5.67568 6.09834 6.24864 6.34393 6.76279 6.77357 7.34119 8.88910 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018401 B = 0.006608 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.265979 B = 4236.149094 C = 5427.280168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.010 3.990 3 Si 0.941 3.059 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.516 4.516 8 H 0.038 0.962 9 C -0.002 4.002 10 C 0.111 3.889 11 H 0.022 0.978 12 C -0.098 4.098 13 C -0.117 4.117 14 C -0.107 4.107 15 C 0.050 3.950 16 N -0.536 5.536 17 C 0.122 3.878 18 C -0.211 4.211 19 C 0.031 3.969 20 N -0.501 5.501 21 C 0.019 3.981 22 S 0.153 5.847 23 H 0.265 0.735 24 H 0.021 0.979 25 H 0.019 0.981 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.032 0.968 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.167 0.833 37 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.066 -8.480 1.744 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.187 4.187 3 Si 0.765 3.235 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.171 1.171 7 C -0.555 4.555 8 H 0.056 0.944 9 C -0.039 4.039 10 C 0.003 3.997 11 H 0.040 0.960 12 C -0.136 4.136 13 C -0.155 4.155 14 C -0.145 4.145 15 C -0.077 4.077 16 N -0.261 5.261 17 C -0.008 4.008 18 C -0.332 4.332 19 C -0.120 4.120 20 N -0.215 5.215 21 C -0.278 4.278 22 S 0.405 5.595 23 H 0.074 0.926 24 H 0.039 0.961 25 H 0.037 0.963 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.185 0.815 37 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 20.533 -8.653 1.597 22.339 hybrid contribution -1.289 1.328 0.328 1.880 sum 19.244 -7.325 1.925 20.680 Atomic orbital electron populations 1.70049 1.08117 1.27926 1.52955 1.25851 0.95437 1.02954 0.94438 0.85794 0.79627 0.79052 0.79004 1.19631 1.21237 1.17095 1.21311 0.91401 0.93085 1.49664 0.94353 1.19625 0.94022 0.93889 0.96380 1.21321 0.84932 0.96616 0.96789 0.96029 1.21443 0.99608 0.96284 0.96310 1.21604 0.96231 0.95617 1.02020 1.21542 0.95191 1.01027 0.96742 1.22264 1.00021 0.87600 0.97856 1.61945 1.08644 1.17683 1.37846 1.20507 0.87926 1.00673 0.91706 1.25868 1.00195 0.98867 1.08302 1.21779 0.89585 0.99330 1.01338 1.66369 1.09097 1.26847 1.19165 1.28984 1.06356 0.92124 1.00373 1.83740 0.96663 1.22287 1.56845 0.92630 0.96103 0.96282 0.93203 0.92623 0.90814 0.92503 0.91785 0.89216 0.90015 0.94986 0.89064 0.93122 0.81548 0.75119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 2 C 0.01 0.58 5.47 84.65 0.46 1.05 16 3 Si 0.94 44.55 27.37 68.60 1.88 46.43 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 6 H -0.25 -10.85 6.69 99.48 0.67 -10.19 16 7 C -0.52 -29.07 8.85 25.60 0.23 -28.84 16 8 H 0.04 2.37 7.28 -2.91 -0.02 2.35 16 9 C 0.00 -0.07 3.25 29.85 0.10 0.02 16 10 C 0.11 4.32 1.90 44.94 0.09 4.41 16 11 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 12 C -0.10 -3.66 5.13 30.65 0.16 -3.51 16 13 C -0.12 -3.29 6.00 30.68 0.18 -3.11 16 14 C -0.11 -2.59 6.09 30.65 0.19 -2.40 16 15 C 0.05 1.32 5.31 86.33 0.46 1.77 16 16 N -0.54 -17.34 4.45 -875.65 -3.90 -21.24 16 17 C 0.12 3.68 5.29 85.56 0.45 4.13 16 18 C -0.21 -5.58 5.45 24.64 0.13 -5.45 16 19 C 0.03 0.86 11.25 83.66 0.94 1.80 16 20 N -0.50 -13.15 10.54 -203.75 -2.15 -15.30 16 21 C 0.02 0.35 12.23 130.65 1.60 1.95 16 22 S 0.15 2.89 21.80 -56.49 -1.23 1.65 16 23 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 24 H 0.02 0.95 5.34 -2.38 -0.01 0.94 16 25 H 0.02 0.89 7.28 -2.39 -0.02 0.87 16 26 H 0.05 2.13 6.87 -2.39 -0.02 2.12 16 27 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.08 1.90 5.98 -2.38 -0.01 1.89 16 33 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 3.10 5.43 -2.39 -0.01 3.09 16 35 H 0.05 1.44 8.08 -2.38 -0.02 1.42 16 36 H 0.17 4.80 8.06 -2.91 -0.02 4.78 16 37 H 0.23 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -66.23 302.92 0.90 -65.34 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.01 Total: 10.20 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 4.98 Total: -28.17 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -5.75 Total: -95.46 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.23 Total: 1.65 kcal Total: -66.23 0.90 -65.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259880228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.105 kcal (2) G-P(sol) polarization free energy of solvation -66.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds