Wall clock time and date at job start Mon Mar 30 2020 07:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.30238 * 121.09677 * 90.02397 * 10 9 7 12 12 S 1.69972 * 105.61846 * 179.97438 * 11 10 9 13 13 C 1.72303 * 94.52452 * 0.02562 * 12 11 10 14 14 C 1.50700 * 127.48603 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46989 * 269.97726 * 14 13 12 16 16 C 1.53004 * 109.46826 * 294.99389 * 15 14 13 17 17 C 1.53002 * 109.46826 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.47175 * 60.00409 * 17 16 15 19 19 C 1.53002 * 109.46749 * 299.99889 * 18 17 16 20 20 C 1.52998 * 109.47685 * 60.00251 * 19 18 17 21 21 N 1.30926 * 105.03309 * 359.74817 * 13 12 11 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09007 * 109.46853 * 29.96861 * 14 13 12 26 26 H 1.08996 * 109.47464 * 149.97246 * 14 13 12 27 27 H 1.08994 * 109.47183 * 54.99568 * 15 14 13 28 28 H 1.09001 * 109.46869 * 300.00478 * 16 15 14 29 29 H 1.09000 * 109.46961 * 60.00486 * 16 15 14 30 30 H 1.08994 * 109.47183 * 300.00179 * 17 16 15 31 31 H 1.09002 * 109.46889 * 180.02562 * 17 16 15 32 32 H 1.09001 * 109.47334 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47166 * 59.99127 * 18 17 16 34 34 H 1.09000 * 109.47187 * 299.99514 * 19 18 17 35 35 H 1.09005 * 109.46826 * 180.02562 * 19 18 17 36 36 H 1.08993 * 109.47297 * 179.97438 * 20 19 18 37 37 H 1.09000 * 109.47409 * 59.99400 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.6669 -4.1612 1.1026 12 16 3.7310 -5.4046 0.6436 13 6 3.5193 -5.1474 -1.0470 14 6 4.1688 -5.9025 -2.1779 15 6 5.4856 -5.2214 -2.5560 16 6 5.1963 -3.8265 -3.1142 17 6 6.5132 -3.1451 -3.4916 18 6 7.2335 -3.9796 -4.5526 19 6 7.5227 -5.3745 -3.9944 20 6 6.2059 -6.0560 -3.6169 21 7 2.6670 -4.1575 -1.1358 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 4.3670 -6.9274 -1.8639 26 1 3.5024 -5.9091 -3.0404 27 1 6.1170 -5.1351 -1.6717 28 1 4.5649 -3.9128 -3.9984 29 1 4.6837 -3.2317 -2.3581 30 1 7.1442 -3.0588 -2.6071 31 1 6.3072 -2.1511 -3.8889 32 1 8.1715 -3.4939 -4.8218 33 1 6.6024 -4.0659 -5.4371 34 1 8.1538 -5.2882 -3.1099 35 1 8.0363 -5.9689 -4.7501 36 1 6.4119 -7.0498 -3.2197 37 1 5.5748 -6.1422 -4.5014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259923181.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:45 Heat of formation + Delta-G solvation = 10.085222 kcal Electronic energy + Delta-G solvation = -17893.294923 eV Core-core repulsion = 15181.667010 eV Total energy + Delta-G solvation = -2711.627913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.77729 -38.61634 -34.10605 -32.98899 -31.19805 -30.68030 -28.95737 -27.47688 -24.26169 -22.70505 -22.31534 -20.83900 -19.84660 -19.02836 -18.03516 -16.49896 -15.62683 -15.06419 -14.67508 -14.57780 -14.23591 -14.11633 -13.75362 -13.07041 -12.82336 -12.39231 -12.19133 -12.07991 -11.82872 -11.64452 -11.30792 -11.15497 -11.13542 -10.83044 -10.67233 -10.60824 -10.51644 -10.21664 -10.04417 -9.88325 -9.64477 -9.55296 -9.13552 -8.47712 -8.38044 -6.10700 -4.13854 0.98603 1.73592 2.34648 3.30950 3.31390 3.34971 3.42823 4.15617 4.41401 4.59163 4.66521 4.72256 5.03443 5.11916 5.25965 5.26935 5.35022 5.42943 5.48636 5.58539 5.58954 5.63921 5.78609 5.83738 5.98563 6.09998 6.11779 6.15027 6.26412 6.30285 6.46087 6.53638 6.66044 7.34933 7.37724 7.82663 8.14589 8.37911 8.85276 9.48476 11.00165 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.005871 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.833865 B = 4768.150144 C = 5959.083199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.099 3.901 10 C 0.304 3.696 11 N -0.466 5.466 12 S 0.131 5.869 13 C 0.092 3.908 14 C -0.034 4.034 15 C -0.080 4.080 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.119 4.119 19 C -0.118 4.118 20 C -0.111 4.111 21 N -0.492 5.492 22 H 0.265 0.735 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.873 -12.644 -8.100 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.057 3.943 10 C 0.017 3.983 11 N -0.293 5.293 12 S 0.270 5.730 13 C -0.198 4.198 14 C -0.075 4.075 15 C -0.100 4.100 16 C -0.155 4.155 17 C -0.157 4.157 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.149 4.149 21 N -0.213 5.213 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.108 0.892 26 H 0.115 0.885 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.800 -12.689 -6.803 19.265 hybrid contribution 0.120 1.346 -0.668 1.508 sum 12.920 -11.343 -7.472 18.746 Atomic orbital electron populations 1.69930 1.05978 1.27247 1.49824 1.24918 0.94930 0.99190 0.94848 0.86510 0.79510 0.82420 0.78764 1.20074 1.21005 1.20117 1.20747 0.92828 0.89270 1.52040 0.92721 1.18134 0.90535 0.85811 0.99824 1.24766 0.96101 0.96316 0.81117 1.77869 1.15055 1.10056 1.26330 1.84595 1.46954 1.38131 1.03346 1.28877 0.95736 0.95680 0.99537 1.20325 0.96340 0.96960 0.93858 1.21171 0.94304 0.95763 0.98767 1.21623 0.97046 0.95028 1.01786 1.21529 0.96756 0.98791 0.98661 1.21548 1.00049 0.95545 0.98549 1.21513 0.97123 0.96220 1.00691 1.21559 0.96512 0.98201 0.98615 1.67385 1.13075 1.10293 1.30555 0.92523 0.93429 0.92962 0.89249 0.88485 0.90870 0.91577 0.90791 0.92276 0.91910 0.92415 0.92026 0.92064 0.92171 0.91866 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.61 9.09 -34.44 -0.31 -14.92 16 8 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.10 2.67 5.51 -29.03 -0.16 2.51 16 10 C 0.30 7.24 6.75 -159.05 -1.07 6.17 16 11 N -0.47 -10.68 12.17 29.43 0.36 -10.32 16 12 S 0.13 2.27 23.81 -107.50 -2.56 -0.29 16 13 C 0.09 1.53 6.24 -12.66 -0.08 1.45 16 14 C -0.03 -0.39 5.32 -27.88 -0.15 -0.54 16 15 C -0.08 -0.88 2.18 -90.61 -0.20 -1.08 16 16 C -0.12 -1.56 5.02 -26.73 -0.13 -1.70 16 17 C -0.12 -1.41 5.92 -26.73 -0.16 -1.56 16 18 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 19 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 20 C -0.11 -0.95 5.21 -26.73 -0.14 -1.09 16 21 N -0.49 -10.37 9.94 -11.35 -0.11 -10.48 16 22 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 24 H 0.05 1.45 8.14 -51.93 -0.42 1.03 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.27 6.89 -51.93 -0.36 0.91 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 315.53 15.07 4.76 4.76 Total: -1.00 -30.73 315.53 -10.48 -41.21 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -5.82 Total: -4.63 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -2.82 Total: -11.49 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.98 Total: -46.33 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.56 Total: -0.29 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.73 -10.48 -41.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259923181.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.293 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds