Wall clock time and date at job start Mon Mar 30 2020 07:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.30238 * 121.09677 * 90.02397 * 10 9 7 12 12 S 1.69972 * 105.61846 * 179.97438 * 11 10 9 13 13 C 1.72303 * 94.52452 * 0.02562 * 12 11 10 14 14 C 1.50700 * 127.48603 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46989 * 269.97726 * 14 13 12 16 16 C 1.53004 * 109.46826 * 294.99389 * 15 14 13 17 17 C 1.53002 * 109.46826 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.47175 * 60.00409 * 17 16 15 19 19 C 1.53002 * 109.46749 * 299.99889 * 18 17 16 20 20 C 1.52998 * 109.47685 * 60.00251 * 19 18 17 21 21 N 1.30926 * 105.03309 * 359.74817 * 13 12 11 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09007 * 109.46853 * 29.96861 * 14 13 12 26 26 H 1.08996 * 109.47464 * 149.97246 * 14 13 12 27 27 H 1.08994 * 109.47183 * 54.99568 * 15 14 13 28 28 H 1.09001 * 109.46869 * 300.00478 * 16 15 14 29 29 H 1.09000 * 109.46961 * 60.00486 * 16 15 14 30 30 H 1.08994 * 109.47183 * 300.00179 * 17 16 15 31 31 H 1.09002 * 109.46889 * 180.02562 * 17 16 15 32 32 H 1.09001 * 109.47334 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47166 * 59.99127 * 18 17 16 34 34 H 1.09000 * 109.47187 * 299.99514 * 19 18 17 35 35 H 1.09005 * 109.46826 * 180.02562 * 19 18 17 36 36 H 1.08993 * 109.47297 * 179.97438 * 20 19 18 37 37 H 1.09000 * 109.47409 * 59.99400 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.6669 -4.1612 1.1026 12 16 3.7310 -5.4046 0.6436 13 6 3.5193 -5.1474 -1.0470 14 6 4.1688 -5.9025 -2.1779 15 6 5.4856 -5.2214 -2.5560 16 6 5.1963 -3.8265 -3.1142 17 6 6.5132 -3.1451 -3.4916 18 6 7.2335 -3.9796 -4.5526 19 6 7.5227 -5.3745 -3.9944 20 6 6.2059 -6.0560 -3.6169 21 7 2.6670 -4.1575 -1.1358 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 4.3670 -6.9274 -1.8639 26 1 3.5024 -5.9091 -3.0404 27 1 6.1170 -5.1351 -1.6717 28 1 4.5649 -3.9128 -3.9984 29 1 4.6837 -3.2317 -2.3581 30 1 7.1442 -3.0588 -2.6071 31 1 6.3072 -2.1511 -3.8889 32 1 8.1715 -3.4939 -4.8218 33 1 6.6024 -4.0659 -5.4371 34 1 8.1538 -5.2882 -3.1099 35 1 8.0363 -5.9689 -4.7501 36 1 6.4119 -7.0498 -3.2197 37 1 5.5748 -6.1422 -4.5014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259923181.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:45 Heat of formation + Delta-G solvation = -7.253786 kcal Electronic energy + Delta-G solvation = -17894.046799 eV Core-core repulsion = 15181.667010 eV Total energy + Delta-G solvation = -2712.379789 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.33203 -39.56104 -35.65182 -34.76406 -32.55971 -31.54493 -31.01031 -28.60769 -26.19389 -23.92839 -23.33355 -21.95362 -20.91459 -20.41913 -19.59787 -18.70303 -16.79258 -16.65739 -16.13882 -15.87671 -15.29680 -15.00911 -14.92165 -14.58856 -14.27060 -13.79251 -13.74472 -13.26694 -13.11920 -13.01591 -12.74506 -12.66523 -12.60064 -12.27225 -11.96444 -11.92975 -11.74828 -11.71030 -11.40524 -11.22195 -11.00342 -10.85401 -10.68625 -10.65827 -9.93797 -8.30122 -6.42616 -0.51414 0.29414 0.72301 1.35085 1.39034 1.46832 1.67405 2.36255 2.80994 3.03682 3.71061 3.75585 3.83939 4.03993 4.25234 4.38061 4.48440 4.50150 4.56142 4.59205 4.68555 4.75126 4.80885 4.85412 4.92913 5.05942 5.14117 5.24200 5.27566 5.30935 5.32375 5.35430 5.45780 5.51361 5.58651 5.64080 5.96034 6.61444 6.74076 7.24208 8.81180 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.005871 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.833865 B = 4768.150144 C = 5959.083199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.015 3.985 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.529 4.529 8 H 0.044 0.956 9 C 0.108 3.892 10 C 0.292 3.708 11 N -0.516 5.516 12 S 0.196 5.804 13 C 0.109 3.891 14 C -0.035 4.035 15 C -0.074 4.074 16 C -0.118 4.118 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.105 4.105 21 N -0.526 5.526 22 H 0.271 0.729 23 H 0.022 0.978 24 H 0.031 0.969 25 H 0.131 0.869 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.027 0.973 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.337 -14.298 -9.261 22.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.568 4.568 8 H 0.063 0.937 9 C 0.066 3.934 10 C 0.004 3.996 11 N -0.345 5.345 12 S 0.337 5.663 13 C -0.179 4.179 14 C -0.076 4.076 15 C -0.094 4.094 16 C -0.156 4.156 17 C -0.158 4.158 18 C -0.153 4.153 19 C -0.155 4.155 20 C -0.142 4.142 21 N -0.247 5.247 22 H 0.080 0.920 23 H 0.040 0.960 24 H 0.049 0.951 25 H 0.149 0.851 26 H 0.125 0.875 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.276 -14.370 -7.969 22.435 hybrid contribution -0.578 1.743 -0.319 1.864 sum 14.698 -12.627 -8.288 21.075 Atomic orbital electron populations 1.70038 1.07456 1.28500 1.50077 1.25819 0.95858 1.02830 0.93981 0.85454 0.78404 0.77908 0.79024 1.19283 1.19603 1.19564 1.20942 0.92469 0.90673 1.52750 0.93724 1.17711 0.90926 0.87330 0.97447 1.24126 0.96661 0.96451 0.82371 1.77543 1.17094 1.12526 1.27305 1.84185 1.44310 1.34892 1.02924 1.29804 0.93484 0.93816 1.00777 1.20745 0.96268 0.98195 0.92415 1.21168 0.94024 0.94643 0.99598 1.21590 0.97356 0.96239 1.00371 1.21527 0.96225 0.98673 0.99385 1.21529 1.00079 0.96079 0.97637 1.21533 0.97221 0.95464 1.01241 1.21549 0.96181 0.98640 0.97853 1.67334 1.15351 1.12319 1.29722 0.92044 0.96021 0.95133 0.85054 0.87466 0.91151 0.91765 0.95438 0.92754 0.93241 0.91534 0.91739 0.92074 0.90166 0.89368 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.92 13.29 21.45 0.28 -55.63 16 2 C 0.01 0.86 5.46 84.66 0.46 1.32 16 3 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.53 -31.74 9.09 25.60 0.23 -31.50 16 8 H 0.04 2.69 7.74 -2.91 -0.02 2.67 16 9 C 0.11 6.18 5.51 29.10 0.16 6.34 16 10 C 0.29 14.49 6.75 139.40 0.94 15.43 16 11 N -0.52 -24.20 12.17 -60.80 -0.74 -24.94 16 12 S 0.20 6.55 23.81 -56.49 -1.35 5.21 16 13 C 0.11 3.50 6.24 88.24 0.55 4.06 16 14 C -0.04 -0.72 5.32 29.85 0.16 -0.56 16 15 C -0.07 -1.44 2.18 -10.79 -0.02 -1.46 16 16 C -0.12 -3.09 5.02 30.60 0.15 -2.94 16 17 C -0.12 -2.76 5.92 30.59 0.18 -2.58 16 18 C -0.12 -1.91 5.92 30.59 0.18 -1.73 16 19 C -0.12 -1.53 5.92 30.59 0.18 -1.35 16 20 C -0.10 -1.34 5.21 30.60 0.16 -1.18 16 21 N -0.53 -22.64 9.94 -189.82 -1.89 -24.52 16 22 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 23 H 0.02 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.03 0.97 6.89 -2.39 -0.02 0.95 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -70.24 315.53 2.72 -67.52 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: 1.04 Total: 1.13 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 3.34 Total: -16.14 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -2.34 Total: -105.10 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: 6.55 SS G_CDS: -1.35 Total: 5.21 kcal Total: -70.24 2.72 -67.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259923181.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.265 kcal (2) G-P(sol) polarization free energy of solvation -70.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds