Wall clock time and date at job start Mon Mar 30 2020 07:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86803 * 119.99688 * 2 1 4 4 H 1.48507 * 109.46871 * 274.98864 * 3 2 1 5 5 H 1.48499 * 109.47139 * 34.98737 * 3 2 1 6 6 H 1.48499 * 109.47532 * 154.98979 * 3 2 1 7 7 C 1.40248 * 120.00521 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00171 * 173.42958 * 7 2 1 9 9 C 1.39909 * 119.99676 * 353.69840 * 7 2 1 10 10 N 1.31864 * 125.55438 * 186.08559 * 9 7 2 11 11 C 1.30456 * 115.69055 * 179.97438 * 10 9 7 12 12 C 1.50696 * 122.10039 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47329 * 275.01863 * 12 11 10 14 14 C 1.48000 * 111.00465 * 298.72833 * 13 12 11 15 15 C 1.50441 * 112.82859 * 191.34366 * 14 13 12 16 16 C 1.54306 * 108.50094 * 93.72273 * 15 14 13 17 17 C 1.45876 * 112.18980 * 281.45986 * 16 15 14 18 18 C 1.54315 * 112.18026 * 61.11928 * 17 16 15 19 19 C 1.47999 * 111.00264 * 170.00090 * 13 12 11 20 20 C 1.34855 * 115.79507 * 0.02562 * 11 10 9 21 21 S 1.71043 * 109.23366 * 359.76321 * 20 11 10 22 22 H 0.96998 * 120.01031 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47605 * 35.02395 * 12 11 10 24 24 H 1.09000 * 109.46947 * 155.02264 * 12 11 10 25 25 H 1.09005 * 108.80676 * 312.20648 * 14 13 12 26 26 H 1.09001 * 108.81301 * 70.47699 * 14 13 12 27 27 H 1.08994 * 109.63195 * 334.01998 * 15 14 13 28 28 H 1.09001 * 109.63139 * 213.42335 * 15 14 13 29 29 H 1.09006 * 108.94119 * 160.76360 * 16 15 14 30 30 H 1.08997 * 108.94261 * 42.16271 * 16 15 14 31 31 H 1.09001 * 108.93660 * 300.43244 * 17 16 15 32 32 H 1.08993 * 108.94383 * 181.81886 * 17 16 15 33 33 H 1.08996 * 109.63225 * 161.76196 * 18 17 16 34 34 H 1.09002 * 109.63334 * 41.17004 * 18 17 16 35 35 H 1.09005 * 108.80889 * 205.70432 * 19 13 12 36 36 H 1.09001 * 108.81211 * 324.08721 * 19 13 12 37 37 H 1.07998 * 125.38716 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3829 2.1073 -1.3949 5 1 1.4949 2.6200 0.8028 6 1 3.5872 1.4123 0.5919 7 6 2.0083 -1.2145 -0.0005 8 1 3.0829 -1.2175 -0.1076 9 6 1.3151 -2.4226 0.1319 10 7 1.8671 -3.6134 0.2588 11 6 1.0362 -4.6130 0.3697 12 6 1.5103 -6.0354 0.5213 13 7 1.7742 -6.6077 -0.8057 14 6 0.5441 -6.6294 -1.6283 15 6 0.6950 -7.4461 -2.8826 16 6 0.1958 -8.8781 -2.5976 17 6 1.1802 -9.6697 -1.8681 18 6 1.5128 -9.0599 -0.4901 19 6 2.4640 -7.9122 -0.6931 20 6 -0.2736 -4.2935 0.3390 21 16 -0.4365 -2.6000 0.1627 22 1 -0.4851 0.8399 0.0004 23 1 2.4256 -6.0523 1.1129 24 1 0.7420 -6.6228 1.0240 25 1 -0.2691 -7.0456 -1.0335 26 1 0.2872 -5.6065 -1.9036 27 1 1.7443 -7.4758 -3.1762 28 1 0.1005 -7.0033 -3.6817 29 1 -0.0234 -9.3714 -3.5445 30 1 -0.7201 -8.8229 -2.0092 31 1 2.0944 -9.7289 -2.4586 32 1 0.7882 -10.6765 -1.7241 33 1 1.9799 -9.8154 0.1416 34 1 0.5985 -8.6988 -0.0191 35 1 3.0363 -8.0869 -1.6042 36 1 3.1520 -7.8743 0.1516 37 1 -1.0906 -4.9954 0.4180 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259939429.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:34 Heat of formation + Delta-G solvation = 14.303801 kcal Electronic energy + Delta-G solvation = -18162.915579 eV Core-core repulsion = 15451.470597 eV Total energy + Delta-G solvation = -2711.444982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.20828 -37.44467 -34.44527 -33.73812 -31.92485 -29.72704 -27.40393 -26.24592 -24.58209 -24.20590 -21.76281 -20.41553 -19.38497 -17.93817 -17.58870 -16.06420 -15.82198 -15.21747 -14.98792 -14.33132 -14.12316 -13.54590 -13.44378 -12.92412 -12.72299 -12.29729 -12.26378 -12.15177 -11.96512 -11.54542 -11.34609 -11.18396 -10.89493 -10.77340 -10.56457 -10.49057 -10.42328 -10.30830 -10.05372 -9.57366 -9.26345 -7.81099 -7.66613 -7.59739 -7.07109 -7.00986 -4.67013 2.56404 2.96401 3.01114 3.07458 3.61321 3.73388 3.99850 4.11990 4.53250 4.73053 4.84056 5.04593 5.25035 5.27370 5.39888 5.58487 5.64662 5.69500 5.75072 5.89826 6.01172 6.06415 6.11117 6.13681 6.21097 6.25334 6.39268 6.40713 6.52659 6.63937 6.75597 6.87178 7.25715 7.56841 7.70869 7.73121 7.97499 8.37846 8.50924 9.83105 9.92120 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039199 B = 0.004548 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.124894 B = 6154.693668 C = 6298.553334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.056 3.944 3 Si 0.939 3.061 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.376 4.376 8 H 0.102 0.898 9 C 0.207 3.793 10 N -0.585 5.585 11 C 0.121 3.879 12 C 0.140 3.860 13 N -0.536 5.536 14 C 0.070 3.930 15 C -0.120 4.120 16 C -0.121 4.121 17 C -0.114 4.114 18 C -0.150 4.150 19 C 0.060 3.940 20 C -0.463 4.463 21 S 0.093 5.907 22 H 0.297 0.703 23 H 0.074 0.926 24 H 0.028 0.972 25 H 0.026 0.974 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.003 -9.706 -2.616 10.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.166 4.166 3 Si 0.763 3.237 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.418 4.418 8 H 0.120 0.880 9 C -0.046 4.046 10 N -0.306 5.306 11 C -0.021 4.021 12 C 0.011 3.989 13 N -0.261 5.261 14 C -0.057 4.057 15 C -0.158 4.158 16 C -0.158 4.158 17 C -0.151 4.151 18 C -0.189 4.189 19 C -0.067 4.067 20 C -0.607 4.607 21 S 0.352 5.648 22 H 0.109 0.891 23 H 0.092 0.908 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.231 -8.631 -2.914 9.113 hybrid contribution -0.212 -0.870 0.554 1.053 sum -0.443 -9.501 -2.361 9.800 Atomic orbital electron populations 1.68861 1.07724 1.30691 1.33628 1.26164 0.95059 1.02571 0.92846 0.85742 0.80231 0.78406 0.79357 1.19070 1.19745 1.18008 1.18980 0.96118 0.87577 1.39158 0.87983 1.23959 0.90944 0.94224 0.95477 1.67235 1.34860 0.97416 1.31123 1.19397 0.88659 0.94093 0.99929 1.20452 0.98908 0.90720 0.88848 1.61742 1.27047 1.22458 1.14862 1.21685 0.90085 1.00842 0.93091 1.21445 1.02171 0.94386 0.97751 1.20609 0.98979 0.96311 0.99917 1.20525 0.99715 0.98629 0.96261 1.21962 1.00910 0.98927 0.97123 1.21879 0.96098 0.86941 1.01827 1.25701 0.99356 1.03916 1.31759 1.84147 1.12290 0.95743 1.72663 0.89078 0.90770 0.95404 0.95554 0.90456 0.90876 0.91469 0.92535 0.92476 0.92124 0.92814 0.91793 0.91828 0.91285 0.91675 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.01 10.71 55.56 0.59 -18.41 16 2 C 0.06 1.33 5.49 -17.28 -0.09 1.24 16 3 Si 0.94 17.73 29.57 -169.99 -5.03 12.70 16 4 H -0.27 -4.92 7.11 56.52 0.40 -4.51 16 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 7 C -0.38 -9.93 9.44 -38.20 -0.36 -10.29 16 8 H 0.10 2.62 7.86 -52.49 -0.41 2.21 16 9 C 0.21 5.77 7.14 -16.91 -0.12 5.65 16 10 N -0.58 -16.12 10.68 -9.33 -0.10 -16.22 16 11 C 0.12 2.99 5.38 -84.38 -0.45 2.53 16 12 C 0.14 2.85 5.28 -4.98 -0.03 2.83 16 13 N -0.54 -9.81 4.71 -237.35 -1.12 -10.93 16 14 C 0.07 1.22 4.20 -4.50 -0.02 1.20 16 15 C -0.12 -1.67 5.63 -27.33 -0.15 -1.83 16 16 C -0.12 -1.41 5.30 -29.42 -0.16 -1.57 16 17 C -0.11 -1.25 5.30 -29.41 -0.16 -1.41 16 18 C -0.15 -1.84 5.60 -27.32 -0.15 -1.99 16 19 C 0.06 0.87 5.16 -4.50 -0.02 0.85 16 20 C -0.46 -11.37 9.78 29.53 0.29 -11.08 16 21 S 0.09 2.42 20.21 -107.50 -2.17 0.24 16 22 H 0.30 6.45 8.29 -40.82 -0.34 6.11 16 23 H 0.07 1.49 7.80 -51.93 -0.40 1.09 16 24 H 0.03 0.53 7.76 -51.93 -0.40 0.13 16 25 H 0.03 0.46 6.44 -51.93 -0.33 0.12 16 26 H 0.08 1.61 7.03 -51.93 -0.37 1.24 16 27 H 0.07 1.04 7.08 -51.93 -0.37 0.68 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.69 7.52 -51.93 -0.39 0.30 16 31 H 0.06 0.64 7.52 -51.93 -0.39 0.25 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.87 6.74 -51.93 -0.35 0.52 16 35 H 0.07 0.95 6.59 -51.93 -0.34 0.61 16 36 H 0.06 0.91 7.64 -51.93 -0.40 0.52 16 37 H 0.12 2.80 8.06 -52.49 -0.42 2.37 16 LS Contribution 299.76 15.07 4.52 4.52 Total: -1.00 -28.22 299.76 -10.14 -38.36 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.40 Total: 3.63 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -1.43 Total: -13.89 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.62 Total: -45.56 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.17 Total: 0.24 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.22 -10.14 -38.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259939429.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.663 kcal (2) G-P(sol) polarization free energy of solvation -28.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds