Wall clock time and date at job start Mon Mar 30 2020 07:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86803 * 119.99688 * 2 1 4 4 H 1.48507 * 109.46871 * 274.98864 * 3 2 1 5 5 H 1.48499 * 109.47139 * 34.98737 * 3 2 1 6 6 H 1.48499 * 109.47532 * 154.98979 * 3 2 1 7 7 C 1.40248 * 120.00521 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00171 * 173.42958 * 7 2 1 9 9 C 1.39909 * 119.99676 * 353.69840 * 7 2 1 10 10 N 1.31864 * 125.55438 * 186.08559 * 9 7 2 11 11 C 1.30456 * 115.69055 * 179.97438 * 10 9 7 12 12 C 1.50696 * 122.10039 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47329 * 275.01863 * 12 11 10 14 14 C 1.48000 * 111.00465 * 298.72833 * 13 12 11 15 15 C 1.50441 * 112.82859 * 191.34366 * 14 13 12 16 16 C 1.54306 * 108.50094 * 93.72273 * 15 14 13 17 17 C 1.45876 * 112.18980 * 281.45986 * 16 15 14 18 18 C 1.54315 * 112.18026 * 61.11928 * 17 16 15 19 19 C 1.47999 * 111.00264 * 170.00090 * 13 12 11 20 20 C 1.34855 * 115.79507 * 0.02562 * 11 10 9 21 21 S 1.71043 * 109.23366 * 359.76321 * 20 11 10 22 22 H 0.96998 * 120.01031 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47605 * 35.02395 * 12 11 10 24 24 H 1.09000 * 109.46947 * 155.02264 * 12 11 10 25 25 H 1.09005 * 108.80676 * 312.20648 * 14 13 12 26 26 H 1.09001 * 108.81301 * 70.47699 * 14 13 12 27 27 H 1.08994 * 109.63195 * 334.01998 * 15 14 13 28 28 H 1.09001 * 109.63139 * 213.42335 * 15 14 13 29 29 H 1.09006 * 108.94119 * 160.76360 * 16 15 14 30 30 H 1.08997 * 108.94261 * 42.16271 * 16 15 14 31 31 H 1.09001 * 108.93660 * 300.43244 * 17 16 15 32 32 H 1.08993 * 108.94383 * 181.81886 * 17 16 15 33 33 H 1.08996 * 109.63225 * 161.76196 * 18 17 16 34 34 H 1.09002 * 109.63334 * 41.17004 * 18 17 16 35 35 H 1.09005 * 108.80889 * 205.70432 * 19 13 12 36 36 H 1.09001 * 108.81211 * 324.08721 * 19 13 12 37 37 H 1.07998 * 125.38716 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3829 2.1073 -1.3949 5 1 1.4949 2.6200 0.8028 6 1 3.5872 1.4123 0.5919 7 6 2.0083 -1.2145 -0.0005 8 1 3.0829 -1.2175 -0.1076 9 6 1.3151 -2.4226 0.1319 10 7 1.8671 -3.6134 0.2588 11 6 1.0362 -4.6130 0.3697 12 6 1.5103 -6.0354 0.5213 13 7 1.7742 -6.6077 -0.8057 14 6 0.5441 -6.6294 -1.6283 15 6 0.6950 -7.4461 -2.8826 16 6 0.1958 -8.8781 -2.5976 17 6 1.1802 -9.6697 -1.8681 18 6 1.5128 -9.0599 -0.4901 19 6 2.4640 -7.9122 -0.6931 20 6 -0.2736 -4.2935 0.3390 21 16 -0.4365 -2.6000 0.1627 22 1 -0.4851 0.8399 0.0004 23 1 2.4256 -6.0523 1.1129 24 1 0.7420 -6.6228 1.0240 25 1 -0.2691 -7.0456 -1.0335 26 1 0.2872 -5.6065 -1.9036 27 1 1.7443 -7.4758 -3.1762 28 1 0.1005 -7.0033 -3.6817 29 1 -0.0234 -9.3714 -3.5445 30 1 -0.7201 -8.8229 -2.0092 31 1 2.0944 -9.7289 -2.4586 32 1 0.7882 -10.6765 -1.7241 33 1 1.9799 -9.8154 0.1416 34 1 0.5985 -8.6988 -0.0191 35 1 3.0363 -8.0869 -1.6042 36 1 3.1520 -7.8743 0.1516 37 1 -1.0906 -4.9954 0.4180 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259939429.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:33 Heat of formation + Delta-G solvation = -3.248606 kcal Electronic energy + Delta-G solvation = -18163.676708 eV Core-core repulsion = 15451.470597 eV Total energy + Delta-G solvation = -2712.206111 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.55526 -39.21089 -36.14309 -35.24255 -33.06341 -31.52341 -28.98526 -28.09254 -25.76050 -25.66873 -23.60742 -21.42046 -20.70110 -19.71833 -19.60800 -17.63157 -17.21603 -16.93303 -16.48524 -15.78054 -15.40531 -14.99979 -14.64408 -14.28552 -14.15761 -13.95900 -13.87837 -13.84344 -13.32370 -13.15759 -12.91008 -12.57162 -12.36867 -12.15837 -11.99398 -11.87728 -11.58036 -11.46162 -11.32013 -11.19685 -11.05900 -9.81765 -9.70196 -9.15208 -8.96806 -8.87488 -6.68354 0.65677 1.40513 1.49280 1.58649 1.59742 2.05966 2.21458 2.25871 2.96987 3.34443 3.74867 3.84804 3.88799 4.12660 4.20451 4.29076 4.40735 4.49224 4.59934 4.65632 4.72602 4.82017 4.84515 4.89127 4.98116 5.06347 5.12395 5.21378 5.25828 5.32041 5.36873 5.38257 5.46836 5.74254 5.96030 6.17560 6.36717 6.42639 6.52927 7.88860 8.04243 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039199 B = 0.004548 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.124894 B = 6154.693668 C = 6298.553334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.021 3.979 3 Si 1.018 2.982 4 H -0.255 1.255 5 H -0.257 1.257 6 H -0.256 1.256 7 C -0.402 4.402 8 H 0.100 0.900 9 C 0.175 3.825 10 N -0.617 5.617 11 C 0.115 3.885 12 C 0.149 3.851 13 N -0.555 5.555 14 C 0.080 3.920 15 C -0.116 4.116 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.145 4.145 19 C 0.061 3.939 20 C -0.471 4.471 21 S 0.076 5.924 22 H 0.311 0.689 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.025 0.975 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 -10.211 -3.056 10.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.199 4.199 3 Si 0.836 3.164 4 H -0.179 1.179 5 H -0.181 1.181 6 H -0.179 1.179 7 C -0.444 4.444 8 H 0.118 0.882 9 C -0.077 4.077 10 N -0.340 5.340 11 C -0.026 4.026 12 C 0.019 3.981 13 N -0.281 5.281 14 C -0.047 4.047 15 C -0.154 4.154 16 C -0.152 4.152 17 C -0.150 4.150 18 C -0.184 4.184 19 C -0.066 4.066 20 C -0.615 4.615 21 S 0.333 5.667 22 H 0.124 0.876 23 H 0.091 0.909 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.219 -9.180 -3.357 9.777 hybrid contribution -0.373 -0.679 0.676 1.028 sum -0.155 -9.859 -2.681 10.218 Atomic orbital electron populations 1.68884 1.09146 1.32638 1.31959 1.27213 0.95889 1.05551 0.91270 0.84622 0.78622 0.73224 0.79964 1.17937 1.18110 1.17933 1.19356 0.96405 0.88560 1.40121 0.88166 1.24429 0.91930 0.95038 0.96312 1.67297 1.35901 0.98025 1.32776 1.19976 0.88625 0.95583 0.98400 1.20356 0.98970 0.88569 0.90254 1.61632 1.27520 1.25196 1.13713 1.21559 0.89860 0.98823 0.94452 1.21422 1.02321 0.95654 0.95958 1.20566 0.98855 0.94675 1.01104 1.20528 0.99962 0.99266 0.95230 1.21909 0.99616 0.98443 0.98424 1.21969 0.96305 0.85853 1.02469 1.25788 0.99873 1.03362 1.32527 1.83927 1.11734 0.97181 1.73827 0.87607 0.90919 0.94245 0.95722 0.94913 0.91040 0.91076 0.90410 0.93008 0.91253 0.90770 0.89679 0.93398 0.90381 0.91399 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.79 10.71 21.88 0.23 -38.55 16 2 C 0.02 1.00 5.49 85.35 0.47 1.47 16 3 Si 1.02 35.21 29.57 68.60 2.03 37.24 16 4 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 5 H -0.26 -8.24 7.11 99.48 0.71 -7.53 16 6 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 7 C -0.40 -21.70 9.44 23.16 0.22 -21.48 16 8 H 0.10 5.27 7.86 -2.91 -0.02 5.25 16 9 C 0.17 10.06 7.14 85.09 0.61 10.67 16 10 N -0.62 -35.24 10.68 -183.44 -1.96 -37.20 16 11 C 0.11 5.86 5.38 41.98 0.23 6.08 16 12 C 0.15 6.12 5.28 85.56 0.45 6.57 16 13 N -0.56 -20.39 4.71 -904.85 -4.26 -24.65 16 14 C 0.08 2.83 4.20 85.26 0.36 3.19 16 15 C -0.12 -3.14 5.63 30.21 0.17 -2.97 16 16 C -0.11 -2.41 5.30 28.85 0.15 -2.26 16 17 C -0.11 -2.12 5.30 28.86 0.15 -1.96 16 18 C -0.14 -3.22 5.60 30.21 0.17 -3.05 16 19 C 0.06 1.67 5.16 85.26 0.44 2.11 16 20 C -0.47 -23.92 9.78 67.04 0.66 -23.27 16 21 S 0.08 4.05 20.21 -56.49 -1.14 2.91 16 22 H 0.31 13.21 8.29 -92.71 -0.77 12.44 16 23 H 0.07 2.96 7.80 -2.39 -0.02 2.95 16 24 H 0.04 1.51 7.76 -2.39 -0.02 1.49 16 25 H 0.02 0.86 6.44 -2.38 -0.02 0.85 16 26 H 0.03 1.42 7.03 -2.39 -0.02 1.40 16 27 H 0.07 1.96 7.08 -2.39 -0.02 1.94 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.05 1.16 7.52 -2.39 -0.02 1.14 16 31 H 0.07 1.22 7.52 -2.39 -0.02 1.20 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.05 1.23 6.74 -2.39 -0.02 1.22 16 35 H 0.08 2.01 6.59 -2.38 -0.02 1.99 16 36 H 0.07 1.81 7.64 -2.39 -0.02 1.79 16 37 H 0.14 6.33 8.06 -2.91 -0.02 6.31 16 Total: -1.00 -62.68 299.76 0.03 -62.65 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 1.06 Total: 22.49 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: 4.07 Total: -24.89 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -5.98 Total: -100.40 kcal Atomic # 14 Polarization: 35.21 SS G_CDS: 2.03 Total: 37.24 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.14 Total: 2.91 kcal Total: -62.68 0.03 -62.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259939429.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.404 kcal (2) G-P(sol) polarization free energy of solvation -62.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds