Wall clock time and date at job start Mon Mar 30 2020 07:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99915 * 2 1 4 4 H 1.48494 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46946 * 299.99861 * 3 2 1 6 6 H 1.48497 * 109.46954 * 59.99771 * 3 2 1 7 7 C 1.37876 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99506 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00244 * 359.97438 * 7 2 1 10 10 H 1.09001 * 108.73572 * 301.70502 * 9 7 2 11 11 C 1.50463 * 108.76968 * 60.00265 * 9 7 2 12 12 C 1.54498 * 108.85485 * 213.07177 * 11 9 7 13 13 C 1.45869 * 111.59341 * 282.80726 * 12 11 9 14 14 N 1.47798 * 112.91335 * 61.32643 * 13 12 11 15 15 C 1.46903 * 111.00074 * 153.87035 * 14 13 12 16 16 C 1.50706 * 109.46921 * 66.03978 * 15 14 13 17 17 C 1.33644 * 126.03326 * 90.00792 * 16 15 14 18 18 N 1.31781 * 114.49886 * 179.73827 * 17 16 15 19 19 C 1.29026 * 117.12417 * 359.97438 * 18 17 16 20 20 S 1.70976 * 110.16782 * 0.02562 * 19 18 17 21 21 C 1.44267 * 109.46530 * 276.73975 * 14 13 12 22 22 C 1.54070 * 111.98242 * 96.43829 * 21 14 13 23 23 H 0.97000 * 120.00015 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.57559 * 93.25951 * 11 9 7 25 25 H 1.09004 * 109.67838 * 332.94743 * 11 9 7 26 26 H 1.09000 * 109.05764 * 162.26527 * 12 11 9 27 27 H 1.09002 * 109.05731 * 43.35067 * 12 11 9 28 28 H 1.09000 * 108.78952 * 300.43976 * 13 12 11 29 29 H 1.08999 * 108.79535 * 182.21493 * 13 12 11 30 30 H 1.09006 * 109.46750 * 306.04738 * 15 14 13 31 31 H 1.08994 * 109.47685 * 186.04122 * 15 14 13 32 32 H 1.07999 * 122.74781 * 359.73229 * 17 16 15 33 33 H 1.08003 * 124.91536 * 180.02562 * 19 18 17 34 34 H 1.09004 * 108.98498 * 217.08331 * 21 14 13 35 35 H 1.09006 * 108.97912 * 335.79713 * 21 14 13 36 36 H 1.09007 * 108.92021 * 198.19367 * 22 21 14 37 37 H 1.09004 * 108.84519 * 79.59183 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6066 -2.5313 0.8779 11 6 0.3917 -2.5621 -1.2340 12 6 -0.9008 -3.3408 -0.9028 13 6 -0.6644 -4.7795 -0.8587 14 7 0.3106 -5.1709 0.1809 15 6 0.0816 -6.5526 0.6240 16 6 0.3701 -7.4990 -0.5128 17 6 1.5510 -8.0614 -0.7871 18 7 1.5457 -8.8598 -1.8356 19 6 0.4260 -9.0025 -2.4606 20 16 -0.7916 -8.0657 -1.7102 21 6 1.6498 -5.0071 -0.3300 22 6 2.2657 -3.6582 0.0881 23 1 -0.4850 0.8400 -0.0004 24 1 0.9325 -3.0738 -2.0301 25 1 0.1373 -1.5522 -1.5560 26 1 -1.6505 -3.1266 -1.6645 27 1 -1.2760 -3.0120 0.0664 28 1 -0.2913 -5.1039 -1.8301 29 1 -1.6098 -5.2849 -0.6616 30 1 -0.9563 -6.6665 0.9370 31 1 0.7408 -6.7795 1.4618 32 1 2.4371 -7.8767 -0.1979 33 1 0.2791 -9.6238 -3.3317 34 1 2.2754 -5.8152 0.0494 35 1 1.6233 -5.0625 -1.4184 36 1 3.1112 -3.4384 -0.5638 37 1 2.6229 -3.7374 1.1149 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260027520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:56 Heat of formation + Delta-G solvation = 49.280059 kcal Electronic energy + Delta-G solvation = -18578.337067 eV Core-core repulsion = 15868.408769 eV Total energy + Delta-G solvation = -2709.928297 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.94545 -38.48909 -34.81768 -32.33934 -31.41487 -30.20962 -27.41891 -25.58950 -24.74844 -23.62540 -22.50648 -20.43833 -19.51798 -18.60654 -17.75883 -16.40783 -15.67309 -15.44408 -15.03987 -14.53453 -14.24477 -14.00095 -13.74382 -13.28862 -12.95643 -12.65110 -12.45729 -12.09615 -11.49658 -11.44162 -11.00402 -10.84119 -10.71535 -10.46513 -10.35350 -9.97317 -9.79144 -9.68755 -9.32119 -9.31515 -9.08430 -8.92095 -8.53022 -8.15662 -7.91532 -5.88299 -3.93800 0.63060 1.30025 1.68487 2.77727 3.34155 3.42406 3.46346 4.24522 4.32193 4.51523 4.87094 5.05556 5.15419 5.38842 5.43688 5.53671 5.72920 5.76064 5.89367 6.04095 6.07546 6.27495 6.35460 6.46139 6.61019 6.72892 6.77250 6.99467 7.19045 7.38846 7.50868 7.56638 7.61801 7.75167 7.87918 8.21014 8.28726 8.62282 9.13514 9.69565 11.16816 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041779 B = 0.004750 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.027923 B = 5893.936790 C = 6168.011235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.059 3.941 3 Si 0.884 3.116 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.513 4.513 8 H 0.050 0.950 9 C 0.053 3.947 10 H 0.033 0.967 11 C -0.089 4.089 12 C -0.114 4.114 13 C 0.066 3.934 14 N -0.503 5.503 15 C 0.127 3.873 16 C -0.238 4.238 17 C 0.032 3.968 18 N -0.470 5.470 19 C 0.007 3.993 20 S 0.119 5.881 21 C 0.058 3.942 22 C -0.099 4.099 23 H 0.256 0.744 24 H 0.016 0.984 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.174 0.826 33 H 0.195 0.805 34 H 0.049 0.951 35 H 0.032 0.968 36 H 0.047 0.953 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.032 -16.141 -2.527 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.712 3.288 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.551 4.551 8 H 0.068 0.932 9 C 0.035 3.965 10 H 0.052 0.948 11 C -0.127 4.127 12 C -0.152 4.152 13 C -0.061 4.061 14 N -0.224 5.224 15 C -0.004 4.004 16 C -0.361 4.361 17 C -0.119 4.119 18 N -0.184 5.184 19 C -0.291 4.291 20 S 0.370 5.630 21 C -0.070 4.070 22 C -0.137 4.137 23 H 0.066 0.934 24 H 0.034 0.966 25 H 0.103 0.897 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.191 0.809 33 H 0.212 0.788 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.814 -15.826 -2.523 16.473 hybrid contribution 1.347 0.488 -0.405 1.488 sum -2.467 -15.338 -2.928 15.809 Atomic orbital electron populations 1.69979 1.05667 1.25890 1.51072 1.24934 0.94804 0.98726 0.95671 0.86670 0.80230 0.84442 0.77427 1.19973 1.21247 1.21185 1.21468 0.92818 0.91125 1.49709 0.93152 1.18376 0.92720 0.90492 0.94916 0.94846 1.21312 0.93188 1.00049 0.98175 1.20543 0.99777 0.93064 1.01789 1.21123 0.94259 0.98699 0.91983 1.62079 1.04251 1.17084 1.39015 1.21064 1.02805 0.84431 0.92118 1.27252 0.96628 1.06839 1.05392 1.21798 0.98166 0.96193 0.95761 1.66307 1.26406 1.17898 1.07744 1.28327 0.91646 1.04109 1.05027 1.84080 1.16179 1.39900 1.22842 1.22049 0.88726 0.98940 0.97272 1.22052 0.98816 0.93469 0.99360 0.93370 0.96565 0.89653 0.93675 0.91247 0.95483 0.93166 0.89637 0.88549 0.80904 0.78820 0.93278 0.94964 0.93467 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.23 11.56 55.43 0.64 -24.59 16 2 C 0.06 1.64 5.03 -17.82 -0.09 1.55 16 3 Si 0.88 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.51 -14.14 8.39 -34.44 -0.29 -14.43 16 8 H 0.05 1.39 7.67 -52.48 -0.40 0.99 16 9 C 0.05 1.32 1.72 -92.36 -0.16 1.16 16 10 H 0.03 0.92 7.38 -51.93 -0.38 0.54 16 11 C -0.09 -2.10 4.70 -27.21 -0.13 -2.22 16 12 C -0.11 -2.29 5.53 -29.32 -0.16 -2.45 16 13 C 0.07 1.12 4.00 -6.70 -0.03 1.09 16 14 N -0.50 -8.30 4.45 -241.00 -1.07 -9.37 16 15 C 0.13 1.62 5.63 -4.97 -0.03 1.60 16 16 C -0.24 -2.96 4.73 -35.92 -0.17 -3.13 16 17 C 0.03 0.42 10.07 -19.18 -0.19 0.22 16 18 N -0.47 -6.27 10.54 -15.75 -0.17 -6.44 16 19 C 0.01 0.07 12.23 51.58 0.63 0.70 16 20 S 0.12 1.29 22.86 -107.50 -2.46 -1.17 16 21 C 0.06 1.01 4.09 -4.67 -0.02 1.00 16 22 C -0.10 -2.06 5.46 -25.50 -0.14 -2.20 16 23 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 24 H 0.02 0.36 7.15 -51.93 -0.37 -0.01 16 25 H 0.09 2.29 5.86 -51.93 -0.30 1.98 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.54 7.59 -51.93 -0.39 1.15 16 28 H 0.03 0.46 7.19 -51.93 -0.37 0.09 16 29 H 0.05 0.75 7.64 -51.93 -0.40 0.35 16 30 H 0.09 1.00 7.89 -51.93 -0.41 0.59 16 31 H 0.10 1.12 8.13 -51.93 -0.42 0.70 16 32 H 0.17 2.02 7.38 -52.49 -0.39 1.63 16 33 H 0.20 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.05 0.74 5.93 -51.93 -0.31 0.44 16 35 H 0.03 0.59 6.51 -51.93 -0.34 0.25 16 36 H 0.05 0.99 7.93 -51.93 -0.41 0.58 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 298.77 15.07 4.50 4.50 Total: -1.00 -29.46 298.77 -9.65 -39.11 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.31 Total: -1.35 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -0.77 Total: -17.11 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: -0.60 Total: -40.39 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.46 Total: -1.17 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.46 -9.65 -39.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260027520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.390 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds