Wall clock time and date at job start Mon Mar 30 2020 07:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99915 * 2 1 4 4 H 1.48494 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46946 * 299.99861 * 3 2 1 6 6 H 1.48497 * 109.46954 * 59.99771 * 3 2 1 7 7 C 1.37876 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99506 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00244 * 359.97438 * 7 2 1 10 10 H 1.09001 * 108.73572 * 301.70502 * 9 7 2 11 11 C 1.50463 * 108.76968 * 60.00265 * 9 7 2 12 12 C 1.54498 * 108.85485 * 213.07177 * 11 9 7 13 13 C 1.45869 * 111.59341 * 282.80726 * 12 11 9 14 14 N 1.47798 * 112.91335 * 61.32643 * 13 12 11 15 15 C 1.46903 * 111.00074 * 153.87035 * 14 13 12 16 16 C 1.50706 * 109.46921 * 66.03978 * 15 14 13 17 17 C 1.33644 * 126.03326 * 90.00792 * 16 15 14 18 18 N 1.31781 * 114.49886 * 179.73827 * 17 16 15 19 19 C 1.29026 * 117.12417 * 359.97438 * 18 17 16 20 20 S 1.70976 * 110.16782 * 0.02562 * 19 18 17 21 21 C 1.44267 * 109.46530 * 276.73975 * 14 13 12 22 22 C 1.54070 * 111.98242 * 96.43829 * 21 14 13 23 23 H 0.97000 * 120.00015 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.57559 * 93.25951 * 11 9 7 25 25 H 1.09004 * 109.67838 * 332.94743 * 11 9 7 26 26 H 1.09000 * 109.05764 * 162.26527 * 12 11 9 27 27 H 1.09002 * 109.05731 * 43.35067 * 12 11 9 28 28 H 1.09000 * 108.78952 * 300.43976 * 13 12 11 29 29 H 1.08999 * 108.79535 * 182.21493 * 13 12 11 30 30 H 1.09006 * 109.46750 * 306.04738 * 15 14 13 31 31 H 1.08994 * 109.47685 * 186.04122 * 15 14 13 32 32 H 1.07999 * 122.74781 * 359.73229 * 17 16 15 33 33 H 1.08003 * 124.91536 * 180.02562 * 19 18 17 34 34 H 1.09004 * 108.98498 * 217.08331 * 21 14 13 35 35 H 1.09006 * 108.97912 * 335.79713 * 21 14 13 36 36 H 1.09007 * 108.92021 * 198.19367 * 22 21 14 37 37 H 1.09004 * 108.84519 * 79.59183 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6066 -2.5313 0.8779 11 6 0.3917 -2.5621 -1.2340 12 6 -0.9008 -3.3408 -0.9028 13 6 -0.6644 -4.7795 -0.8587 14 7 0.3106 -5.1709 0.1809 15 6 0.0816 -6.5526 0.6240 16 6 0.3701 -7.4990 -0.5128 17 6 1.5510 -8.0614 -0.7871 18 7 1.5457 -8.8598 -1.8356 19 6 0.4260 -9.0025 -2.4606 20 16 -0.7916 -8.0657 -1.7102 21 6 1.6498 -5.0071 -0.3300 22 6 2.2657 -3.6582 0.0881 23 1 -0.4850 0.8400 -0.0004 24 1 0.9325 -3.0738 -2.0301 25 1 0.1373 -1.5522 -1.5560 26 1 -1.6505 -3.1266 -1.6645 27 1 -1.2760 -3.0120 0.0664 28 1 -0.2913 -5.1039 -1.8301 29 1 -1.6098 -5.2849 -0.6616 30 1 -0.9563 -6.6665 0.9370 31 1 0.7408 -6.7795 1.4618 32 1 2.4371 -7.8767 -0.1979 33 1 0.2791 -9.6238 -3.3317 34 1 2.2754 -5.8152 0.0494 35 1 1.6233 -5.0625 -1.4184 36 1 3.1112 -3.4384 -0.5638 37 1 2.6229 -3.7374 1.1149 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260027520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:56 Heat of formation + Delta-G solvation = 30.837156 kcal Electronic energy + Delta-G solvation = -18579.136811 eV Core-core repulsion = 15868.408769 eV Total energy + Delta-G solvation = -2710.728042 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.97865 -39.79467 -36.49718 -34.04232 -33.11440 -31.47378 -28.77539 -27.11875 -26.17286 -25.00155 -24.07466 -21.65761 -20.67996 -20.27806 -18.80460 -18.39614 -17.01058 -16.65056 -16.37481 -16.24649 -15.53765 -15.05880 -14.87967 -14.78536 -14.43670 -14.19340 -13.88867 -13.45280 -13.19068 -12.95567 -12.70389 -12.57074 -12.33026 -12.06498 -11.97209 -11.62323 -11.52224 -11.12758 -10.83711 -10.62322 -10.52758 -10.25655 -10.21707 -9.90732 -9.22131 -8.01235 -6.13961 -0.23783 0.45665 0.82300 1.40110 1.42509 1.52971 1.87084 2.47122 3.05298 3.25571 3.47266 3.89351 4.01770 4.08495 4.23329 4.38841 4.46937 4.51279 4.67663 4.70781 4.78781 4.85752 4.88123 4.96108 5.03158 5.13289 5.19059 5.29122 5.42418 5.60169 5.73559 5.80964 6.10138 6.24399 6.28234 6.32602 6.53745 6.74740 7.03158 7.52623 9.02523 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041779 B = 0.004750 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.027923 B = 5893.936790 C = 6168.011235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.014 3.986 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.043 0.957 9 C 0.058 3.942 10 H -0.002 1.002 11 C -0.083 4.083 12 C -0.102 4.102 13 C 0.073 3.927 14 N -0.522 5.522 15 C 0.131 3.869 16 C -0.254 4.254 17 C 0.026 3.974 18 N -0.502 5.502 19 C 0.012 3.988 20 S 0.145 5.855 21 C 0.074 3.926 22 C -0.096 4.096 23 H 0.257 0.743 24 H 0.020 0.980 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.179 0.821 33 H 0.226 0.774 34 H 0.074 0.926 35 H 0.024 0.976 36 H 0.040 0.960 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.215 -17.634 -3.001 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.185 4.185 3 Si 0.771 3.229 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.062 0.938 9 C 0.039 3.961 10 H 0.017 0.983 11 C -0.121 4.121 12 C -0.140 4.140 13 C -0.054 4.054 14 N -0.244 5.244 15 C 0.001 3.999 16 C -0.377 4.377 17 C -0.126 4.126 18 N -0.216 5.216 19 C -0.285 4.285 20 S 0.397 5.603 21 C -0.055 4.055 22 C -0.134 4.134 23 H 0.066 0.934 24 H 0.039 0.961 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.127 0.873 32 H 0.195 0.805 33 H 0.242 0.758 34 H 0.092 0.908 35 H 0.042 0.958 36 H 0.059 0.941 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.003 -17.333 -2.994 18.039 hybrid contribution 1.374 0.927 -0.267 1.679 sum -2.629 -16.406 -3.261 16.932 Atomic orbital electron populations 1.70101 1.06829 1.26585 1.51400 1.25636 0.95636 1.01844 0.95369 0.85711 0.79117 0.80543 0.77489 1.19555 1.20752 1.20775 1.21852 0.92786 0.92911 1.49997 0.93834 1.18282 0.92858 0.91110 0.93832 0.98337 1.21113 0.94786 0.98565 0.97606 1.20407 0.98040 0.95044 1.00538 1.20949 0.95675 0.96310 0.92433 1.61909 1.03506 1.20134 1.38815 1.21051 1.04032 0.82318 0.92492 1.27135 0.97204 1.07468 1.05913 1.21954 0.98591 0.96168 0.95846 1.66351 1.27668 1.19016 1.08575 1.28908 0.90969 1.03476 1.05145 1.83981 1.15284 1.39253 1.21829 1.21805 0.89744 0.97260 0.96701 1.21949 0.97796 0.94358 0.99294 0.93369 0.96105 0.93382 0.92601 0.93839 0.95177 0.90653 0.88295 0.87336 0.80454 0.75795 0.90754 0.95794 0.94078 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.99 11.56 21.45 0.25 -52.75 16 2 C 0.01 0.77 5.03 84.65 0.43 1.19 16 3 Si 0.94 44.54 29.54 68.60 2.03 46.57 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 7 C -0.54 -30.36 8.39 25.60 0.21 -30.15 16 8 H 0.04 2.45 7.67 -2.91 -0.02 2.43 16 9 C 0.06 2.93 1.72 -11.92 -0.02 2.91 16 10 H 0.00 -0.09 7.38 -2.39 -0.02 -0.11 16 11 C -0.08 -3.96 4.70 30.28 0.14 -3.81 16 12 C -0.10 -4.11 5.53 28.92 0.16 -3.96 16 13 C 0.07 2.35 4.00 83.94 0.34 2.69 16 14 N -0.52 -16.42 4.45 -916.37 -4.08 -20.50 16 15 C 0.13 3.03 5.63 85.56 0.48 3.51 16 16 C -0.25 -5.66 4.73 24.64 0.12 -5.54 16 17 C 0.03 0.61 10.07 83.66 0.84 1.45 16 18 N -0.50 -12.25 10.54 -203.74 -2.15 -14.40 16 19 C 0.01 0.23 12.23 130.65 1.60 1.83 16 20 S 0.14 2.70 22.86 -56.49 -1.29 1.41 16 21 C 0.07 2.46 4.09 87.16 0.36 2.81 16 22 C -0.10 -4.01 5.46 31.39 0.17 -3.84 16 23 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 24 H 0.02 0.94 7.15 -2.39 -0.02 0.92 16 25 H 0.05 2.65 5.86 -2.38 -0.01 2.63 16 26 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.04 1.96 7.59 -2.39 -0.02 1.94 16 28 H 0.03 0.96 7.19 -2.39 -0.02 0.94 16 29 H 0.08 2.05 7.64 -2.39 -0.02 2.03 16 30 H 0.10 2.03 7.89 -2.38 -0.02 2.01 16 31 H 0.11 2.24 8.13 -2.39 -0.02 2.22 16 32 H 0.18 3.80 7.38 -2.91 -0.02 3.78 16 33 H 0.23 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.07 2.11 5.93 -2.39 -0.01 2.09 16 35 H 0.02 0.84 6.51 -2.38 -0.02 0.83 16 36 H 0.04 1.74 7.93 -2.38 -0.02 1.72 16 37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -64.33 298.77 0.64 -63.69 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.06 Total: 6.88 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 4.82 Total: -30.90 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -5.98 Total: -87.64 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.29 Total: 1.41 kcal Total: -64.33 0.64 -63.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260027520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.529 kcal (2) G-P(sol) polarization free energy of solvation -64.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds