Wall clock time and date at job start Mon Mar 30 2020 07:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00160 * 2 1 4 4 H 1.48502 * 109.47017 * 269.99479 * 3 2 1 5 5 H 1.48495 * 109.47411 * 29.99555 * 3 2 1 6 6 H 1.48498 * 109.47327 * 149.99595 * 3 2 1 7 7 C 1.37881 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00309 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.02950 * 59.99895 * 9 7 2 11 11 C 1.54521 * 108.98097 * 301.07574 * 9 7 2 12 12 C 1.50539 * 108.86799 * 162.24358 * 11 9 7 13 13 C 1.53923 * 112.93791 * 91.75495 * 12 11 9 14 14 N 1.47943 * 113.32807 * 317.75293 * 13 12 11 15 15 C 1.46902 * 110.99871 * 192.18949 * 14 13 12 16 16 C 1.50699 * 109.47038 * 297.40802 * 15 14 13 17 17 C 1.33644 * 126.03761 * 89.72112 * 16 15 14 18 18 N 1.31782 * 114.49769 * 179.79058 * 17 16 15 19 19 C 1.29018 * 117.12647 * 0.51266 * 18 17 16 20 20 S 1.70978 * 110.17001 * 359.71784 * 19 18 17 21 21 C 1.44298 * 113.64673 * 318.13984 * 14 13 12 22 22 C 1.45878 * 109.04353 * 178.95683 * 9 7 2 23 23 H 0.96994 * 119.99716 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.57676 * 282.06392 * 11 9 7 25 25 H 1.08999 * 109.57270 * 42.43632 * 11 9 7 26 26 H 1.09001 * 108.79054 * 330.86289 * 12 11 9 27 27 H 1.08996 * 108.70259 * 212.57805 * 12 11 9 28 28 H 1.09001 * 108.71269 * 196.75886 * 13 12 11 29 29 H 1.09001 * 108.61535 * 78.67344 * 13 12 11 30 30 H 1.08999 * 109.47300 * 57.41220 * 15 14 13 31 31 H 1.09003 * 109.47079 * 177.41195 * 15 14 13 32 32 H 1.07997 * 122.74664 * 359.97004 * 17 16 15 33 33 H 1.08001 * 124.91700 * 179.75632 * 19 18 17 34 34 H 1.09003 * 109.69882 * 335.69455 * 21 14 13 35 35 H 1.09000 * 109.73266 * 215.12405 * 21 14 13 36 36 H 1.09005 * 108.83724 * 302.80193 * 22 9 7 37 37 H 1.09000 * 108.84595 * 61.26492 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6274 -2.5496 -0.8921 11 6 0.3461 -2.5571 1.2517 12 6 -0.7052 -3.6143 1.0436 13 6 -0.2815 -4.9947 1.5766 14 7 1.1236 -5.3370 1.2648 15 6 1.3916 -6.7563 1.5327 16 6 1.1957 -7.0362 3.0004 17 6 0.0524 -7.4080 3.5842 18 7 0.1396 -7.5969 4.8855 19 6 1.2901 -7.3954 5.4335 20 16 2.4317 -6.9239 4.2512 21 6 1.5229 -4.9793 -0.0749 22 6 2.2071 -3.6008 -0.0240 23 1 -0.4849 0.8400 -0.0004 24 1 0.9471 -2.8069 2.1259 25 1 -0.1336 -1.5897 1.4005 26 1 -0.9124 -3.6983 -0.0232 27 1 -1.6172 -3.3056 1.5546 28 1 -0.9313 -5.7529 1.1395 29 1 -0.4120 -5.0050 2.6587 30 1 0.7056 -7.3718 0.9507 31 1 2.4182 -6.9916 1.2518 32 1 -0.8667 -7.5452 3.0341 33 1 1.5017 -7.5088 6.4865 34 1 0.6450 -4.9302 -0.7191 35 1 2.2210 -5.7217 -0.4615 36 1 2.8464 -3.4925 -0.9001 37 1 2.8262 -3.5496 0.8717 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260027522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:58 Heat of formation + Delta-G solvation = 46.558562 kcal Electronic energy + Delta-G solvation = -18374.982499 eV Core-core repulsion = 15664.936189 eV Total energy + Delta-G solvation = -2710.046310 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.73387 -38.39307 -34.94783 -32.17101 -31.48220 -30.47181 -27.17130 -25.72994 -24.82003 -23.23736 -22.74375 -20.05687 -19.12218 -18.99541 -17.88288 -16.46057 -15.70579 -15.57644 -14.97692 -14.47300 -14.10897 -14.01403 -13.83843 -12.98600 -12.80667 -12.65632 -12.41275 -12.15487 -11.60260 -11.36777 -11.16254 -10.92523 -10.72624 -10.49383 -10.41096 -10.11192 -9.64784 -9.56762 -9.35560 -9.20527 -8.98378 -8.93644 -8.58314 -8.17522 -7.76445 -5.89988 -3.96747 0.71989 1.40020 1.80543 2.83788 3.34095 3.41023 3.44509 4.28432 4.35400 4.49940 4.89307 5.10902 5.22396 5.36683 5.45721 5.54789 5.60835 5.74887 5.86830 5.99764 6.05118 6.14495 6.27011 6.41268 6.59127 6.72473 6.90301 7.03839 7.40100 7.46156 7.54579 7.61004 7.68882 7.73305 7.86605 8.15249 8.31850 8.58019 9.08464 9.67530 11.14410 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029656 B = 0.004738 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.948184 B = 5907.742244 C = 6033.929155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.052 0.948 9 C 0.045 3.955 10 H 0.017 0.983 11 C -0.102 4.102 12 C -0.111 4.111 13 C 0.069 3.931 14 N -0.536 5.536 15 C 0.132 3.868 16 C -0.194 4.194 17 C 0.027 3.973 18 N -0.472 5.472 19 C 0.001 3.999 20 S 0.144 5.856 21 C 0.063 3.937 22 C -0.090 4.090 23 H 0.257 0.743 24 H 0.036 0.964 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.018 0.982 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.170 0.830 33 H 0.195 0.805 34 H 0.041 0.959 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.282 -15.112 5.921 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.070 0.930 9 C 0.026 3.974 10 H 0.035 0.965 11 C -0.140 4.140 12 C -0.149 4.149 13 C -0.058 4.058 14 N -0.261 5.261 15 C 0.002 3.998 16 C -0.316 4.316 17 C -0.125 4.125 18 N -0.185 5.185 19 C -0.297 4.297 20 S 0.396 5.604 21 C -0.065 4.065 22 C -0.128 4.128 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.109 0.891 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.187 0.813 33 H 0.212 0.788 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.009 -14.626 6.616 16.333 hybrid contribution -0.951 0.410 -0.854 1.343 sum 2.058 -14.216 5.762 15.477 Atomic orbital electron populations 1.69896 1.05812 1.26056 1.51067 1.24953 0.94793 0.98862 0.95433 0.86693 0.79985 0.83941 0.77954 1.20872 1.21363 1.20008 1.21321 0.92747 0.90897 1.49747 0.92987 1.17670 0.93456 0.92194 0.94058 0.96536 1.21306 0.96018 0.97987 0.98649 1.21432 0.99698 0.93781 1.00014 1.22445 0.86054 0.97148 1.00124 1.60749 1.22864 1.14868 1.27614 1.20503 1.01654 0.90246 0.87404 1.25971 0.96322 1.08120 1.01181 1.21700 0.98717 1.02882 0.89222 1.66292 1.24200 1.17190 1.10851 1.28304 0.92026 1.04430 1.04899 1.84069 1.15409 1.61658 0.99245 1.21955 0.98690 0.98619 0.87190 1.20549 0.99092 0.92738 1.00458 0.93252 0.94560 0.89133 0.93161 0.93331 0.96365 0.92052 0.93202 0.89682 0.81313 0.78828 0.94092 0.92889 0.93770 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 11.25 55.43 0.62 -24.81 16 2 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.00 8.48 -34.44 -0.29 -14.29 16 8 H 0.05 1.42 7.72 -52.48 -0.41 1.02 16 9 C 0.04 1.10 1.68 -94.35 -0.16 0.94 16 10 H 0.02 0.45 7.59 -51.93 -0.39 0.05 16 11 C -0.10 -2.41 4.80 -27.16 -0.13 -2.54 16 12 C -0.11 -2.22 5.28 -27.48 -0.14 -2.36 16 13 C 0.07 1.16 4.69 -2.77 -0.01 1.14 16 14 N -0.54 -8.65 4.01 -236.08 -0.95 -9.60 16 15 C 0.13 1.70 5.34 -4.98 -0.03 1.67 16 16 C -0.19 -2.49 5.41 -35.92 -0.19 -2.68 16 17 C 0.03 0.35 10.05 -19.18 -0.19 0.15 16 18 N -0.47 -6.38 10.54 -15.75 -0.17 -6.55 16 19 C 0.00 0.01 12.23 51.58 0.63 0.64 16 20 S 0.14 1.64 23.22 -107.50 -2.50 -0.85 16 21 C 0.06 1.07 5.41 -4.70 -0.03 1.04 16 22 C -0.09 -1.87 4.49 -29.59 -0.13 -2.00 16 23 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.04 0.87 7.78 -51.93 -0.40 0.46 16 25 H 0.09 2.45 5.71 -51.93 -0.30 2.15 16 26 H 0.05 1.03 6.66 -51.93 -0.35 0.69 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.02 0.27 7.95 -51.93 -0.41 -0.14 16 29 H 0.06 1.04 6.94 -51.93 -0.36 0.68 16 30 H 0.05 0.58 8.04 -51.93 -0.42 0.17 16 31 H 0.08 1.00 7.79 -51.93 -0.40 0.60 16 32 H 0.17 1.99 8.06 -52.49 -0.42 1.56 16 33 H 0.19 1.49 8.06 -52.49 -0.42 1.06 16 34 H 0.04 0.72 6.79 -51.93 -0.35 0.37 16 35 H 0.05 0.76 7.40 -51.93 -0.38 0.38 16 36 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 37 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 LS Contribution 302.10 15.07 4.55 4.55 Total: -1.00 -29.45 302.10 -9.65 -39.10 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.42 Total: -1.52 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -0.77 Total: -16.71 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: -0.49 Total: -40.96 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.50 Total: -0.85 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.45 -9.65 -39.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260027522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.657 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds