Wall clock time and date at job start Mon Mar 30 2020 07:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00160 * 2 1 4 4 H 1.48502 * 109.47017 * 269.99479 * 3 2 1 5 5 H 1.48495 * 109.47411 * 29.99555 * 3 2 1 6 6 H 1.48498 * 109.47327 * 149.99595 * 3 2 1 7 7 C 1.37881 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00309 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.02950 * 59.99895 * 9 7 2 11 11 C 1.54521 * 108.98097 * 301.07574 * 9 7 2 12 12 C 1.50539 * 108.86799 * 162.24358 * 11 9 7 13 13 C 1.53923 * 112.93791 * 91.75495 * 12 11 9 14 14 N 1.47943 * 113.32807 * 317.75293 * 13 12 11 15 15 C 1.46902 * 110.99871 * 192.18949 * 14 13 12 16 16 C 1.50699 * 109.47038 * 297.40802 * 15 14 13 17 17 C 1.33644 * 126.03761 * 89.72112 * 16 15 14 18 18 N 1.31782 * 114.49769 * 179.79058 * 17 16 15 19 19 C 1.29018 * 117.12647 * 0.51266 * 18 17 16 20 20 S 1.70978 * 110.17001 * 359.71784 * 19 18 17 21 21 C 1.44298 * 113.64673 * 318.13984 * 14 13 12 22 22 C 1.45878 * 109.04353 * 178.95683 * 9 7 2 23 23 H 0.96994 * 119.99716 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.57676 * 282.06392 * 11 9 7 25 25 H 1.08999 * 109.57270 * 42.43632 * 11 9 7 26 26 H 1.09001 * 108.79054 * 330.86289 * 12 11 9 27 27 H 1.08996 * 108.70259 * 212.57805 * 12 11 9 28 28 H 1.09001 * 108.71269 * 196.75886 * 13 12 11 29 29 H 1.09001 * 108.61535 * 78.67344 * 13 12 11 30 30 H 1.08999 * 109.47300 * 57.41220 * 15 14 13 31 31 H 1.09003 * 109.47079 * 177.41195 * 15 14 13 32 32 H 1.07997 * 122.74664 * 359.97004 * 17 16 15 33 33 H 1.08001 * 124.91700 * 179.75632 * 19 18 17 34 34 H 1.09003 * 109.69882 * 335.69455 * 21 14 13 35 35 H 1.09000 * 109.73266 * 215.12405 * 21 14 13 36 36 H 1.09005 * 108.83724 * 302.80193 * 22 9 7 37 37 H 1.09000 * 108.84595 * 61.26492 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6274 -2.5496 -0.8921 11 6 0.3461 -2.5571 1.2517 12 6 -0.7052 -3.6143 1.0436 13 6 -0.2815 -4.9947 1.5766 14 7 1.1236 -5.3370 1.2648 15 6 1.3916 -6.7563 1.5327 16 6 1.1957 -7.0362 3.0004 17 6 0.0524 -7.4080 3.5842 18 7 0.1396 -7.5969 4.8855 19 6 1.2901 -7.3954 5.4335 20 16 2.4317 -6.9239 4.2512 21 6 1.5229 -4.9793 -0.0749 22 6 2.2071 -3.6008 -0.0240 23 1 -0.4849 0.8400 -0.0004 24 1 0.9471 -2.8069 2.1259 25 1 -0.1336 -1.5897 1.4005 26 1 -0.9124 -3.6983 -0.0232 27 1 -1.6172 -3.3056 1.5546 28 1 -0.9313 -5.7529 1.1395 29 1 -0.4120 -5.0050 2.6587 30 1 0.7056 -7.3718 0.9507 31 1 2.4182 -6.9916 1.2518 32 1 -0.8667 -7.5452 3.0341 33 1 1.5017 -7.5088 6.4865 34 1 0.6450 -4.9302 -0.7191 35 1 2.2210 -5.7217 -0.4615 36 1 2.8464 -3.4925 -0.9001 37 1 2.8262 -3.5496 0.8717 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260027522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:58 Heat of formation + Delta-G solvation = 28.717880 kcal Electronic energy + Delta-G solvation = -18375.756129 eV Core-core repulsion = 15664.936189 eV Total energy + Delta-G solvation = -2710.819940 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73908 -39.78216 -36.57415 -33.96234 -33.06985 -31.78670 -28.46854 -27.37509 -26.10456 -24.81018 -24.11482 -21.01424 -20.84006 -20.50849 -18.88939 -18.44524 -17.04257 -16.62491 -16.51575 -16.22811 -15.31919 -15.15977 -14.79028 -14.58116 -14.44696 -14.10213 -13.87125 -13.45706 -13.09709 -13.04075 -12.81299 -12.54372 -12.33042 -12.16851 -12.02641 -11.71254 -11.40544 -11.19722 -10.84797 -10.56335 -10.53914 -10.27930 -10.16698 -9.83658 -9.01235 -8.02636 -6.16978 -0.17965 0.52832 0.91507 1.40984 1.42241 1.51966 1.90521 2.45854 3.08187 3.22453 3.52166 3.89346 4.10264 4.13220 4.26086 4.40335 4.44600 4.47564 4.53674 4.63247 4.75250 4.83611 4.88903 4.98234 5.09397 5.17204 5.24068 5.30687 5.58562 5.65960 5.70518 5.78486 6.08409 6.23463 6.31228 6.44783 6.51010 6.79686 6.97224 7.50872 8.99971 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029656 B = 0.004738 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.948184 B = 5907.742244 C = 6033.929155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.012 3.988 3 Si 0.947 3.053 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.047 0.953 9 C 0.047 3.953 10 H -0.014 1.014 11 C -0.089 4.089 12 C -0.106 4.106 13 C 0.082 3.918 14 N -0.551 5.551 15 C 0.135 3.865 16 C -0.212 4.212 17 C 0.022 3.978 18 N -0.503 5.503 19 C 0.008 3.992 20 S 0.156 5.844 21 C 0.075 3.925 22 C -0.086 4.086 23 H 0.258 0.742 24 H 0.027 0.973 25 H 0.053 0.947 26 H 0.040 0.960 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.177 0.823 33 H 0.226 0.774 34 H 0.034 0.966 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.075 -16.486 6.447 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.186 4.186 3 Si 0.774 3.226 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.066 0.934 9 C 0.029 3.971 10 H 0.004 0.996 11 C -0.127 4.127 12 C -0.144 4.144 13 C -0.045 4.045 14 N -0.277 5.277 15 C 0.007 3.993 16 C -0.334 4.334 17 C -0.130 4.130 18 N -0.217 5.217 19 C -0.289 4.289 20 S 0.408 5.592 21 C -0.053 4.053 22 C -0.125 4.125 23 H 0.067 0.933 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.194 0.806 33 H 0.242 0.758 34 H 0.052 0.948 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.814 -16.014 7.142 17.944 hybrid contribution -1.176 0.848 -0.966 1.742 sum 2.638 -15.166 6.176 16.587 Atomic orbital electron populations 1.70037 1.07062 1.26717 1.51582 1.25691 0.95610 1.02119 0.95170 0.85721 0.78836 0.79952 0.78132 1.20212 1.21078 1.19462 1.21739 0.92848 0.92640 1.49828 0.93428 1.17640 0.93672 0.92825 0.92966 0.99610 1.21049 0.96452 0.97441 0.97804 1.21299 0.98606 0.94891 0.99628 1.22226 0.87127 0.95311 0.99850 1.60583 1.22366 1.17633 1.27089 1.20544 1.02948 0.88105 0.87747 1.26007 0.96829 1.09091 1.01478 1.21886 0.99175 1.02609 0.89347 1.66338 1.25350 1.18719 1.11263 1.28874 0.91267 1.02508 1.06229 1.84033 1.15000 1.61219 0.98913 1.21751 0.98829 0.96969 0.87753 1.20415 0.98175 0.94039 0.99832 0.93327 0.95373 0.92881 0.94162 0.93068 0.93985 0.92239 0.91388 0.88287 0.80601 0.75811 0.94751 0.89522 0.93894 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.65 11.25 21.45 0.24 -53.41 16 2 C 0.01 0.69 5.20 84.66 0.44 1.13 16 3 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.53 -29.91 8.48 25.60 0.22 -29.69 16 8 H 0.05 2.64 7.72 -2.91 -0.02 2.62 16 9 C 0.05 2.38 1.68 -13.21 -0.02 2.36 16 10 H -0.01 -0.79 7.59 -2.39 -0.02 -0.81 16 11 C -0.09 -4.33 4.80 30.31 0.15 -4.18 16 12 C -0.11 -4.24 5.28 30.11 0.16 -4.08 16 13 C 0.08 2.59 4.69 86.41 0.41 3.00 16 14 N -0.55 -16.64 4.01 -900.81 -3.61 -20.26 16 15 C 0.14 3.07 5.34 85.56 0.46 3.53 16 16 C -0.21 -4.93 5.41 24.64 0.13 -4.80 16 17 C 0.02 0.52 10.05 83.66 0.84 1.36 16 18 N -0.50 -12.62 10.54 -203.75 -2.15 -14.76 16 19 C 0.01 0.16 12.23 130.66 1.60 1.76 16 20 S 0.16 3.20 23.22 -56.49 -1.31 1.89 16 21 C 0.07 2.39 5.41 87.12 0.47 2.86 16 22 C -0.09 -3.56 4.49 28.74 0.13 -3.43 16 23 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 24 H 0.03 1.36 7.78 -2.39 -0.02 1.34 16 25 H 0.05 2.97 5.71 -2.39 -0.01 2.96 16 26 H 0.04 1.66 6.66 -2.39 -0.02 1.65 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.04 1.15 7.95 -2.39 -0.02 1.13 16 29 H 0.06 1.93 6.94 -2.39 -0.02 1.91 16 30 H 0.07 1.33 8.04 -2.39 -0.02 1.31 16 31 H 0.10 1.98 7.79 -2.39 -0.02 1.96 16 32 H 0.18 3.77 8.06 -2.91 -0.02 3.75 16 33 H 0.23 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.03 1.15 6.79 -2.39 -0.02 1.13 16 35 H 0.09 2.20 7.40 -2.39 -0.02 2.19 16 36 H 0.04 1.74 8.11 -2.38 -0.02 1.72 16 37 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 Total: -1.00 -64.29 302.10 1.22 -63.07 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.05 Total: 7.22 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 4.97 Total: -30.19 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -5.52 Total: -88.43 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.31 Total: 1.89 kcal Total: -64.29 1.22 -63.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260027522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.786 kcal (2) G-P(sol) polarization free energy of solvation -64.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds