Wall clock time and date at job start Mon Mar 30 2020 06:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36009 * 117.00113 * 2 1 4 4 C 1.38487 * 120.08154 * 0.02562 * 3 2 1 5 5 C 1.38298 * 120.02185 * 179.97438 * 4 3 2 6 6 C 1.38272 * 120.19543 * 0.29609 * 5 4 3 7 7 C 1.38211 * 120.15954 * 359.44933 * 6 5 4 8 8 C 1.50700 * 120.01142 * 180.27630 * 7 6 5 9 9 C 1.52992 * 109.47186 * 245.81741 * 8 7 6 10 10 C 1.53006 * 109.46922 * 5.81918 * 8 7 6 11 11 C 1.50697 * 109.46577 * 125.81572 * 8 7 6 12 12 H 1.07994 * 120.00895 * 358.39086 * 11 8 7 13 13 C 1.37889 * 119.99582 * 178.39244 * 11 8 7 14 14 N 1.31513 * 119.99860 * 0.02562 * 13 11 8 15 15 Si 1.86804 * 119.99733 * 180.02562 * 13 11 8 16 16 H 1.48495 * 109.46811 * 90.00138 * 15 13 11 17 17 H 1.48501 * 109.46646 * 209.99956 * 15 13 11 18 18 H 1.48499 * 109.47336 * 329.99983 * 15 13 11 19 19 C 1.38791 * 119.96984 * 0.52906 * 7 6 5 20 20 S 1.76210 * 120.08861 * 179.77105 * 19 7 6 21 21 C 1.81398 * 102.99654 * 250.27596 * 20 19 7 22 22 H 1.09003 * 109.46670 * 299.99385 * 1 2 3 23 23 H 1.09001 * 109.47337 * 59.99653 * 1 2 3 24 24 H 1.08998 * 109.47219 * 180.02562 * 1 2 3 25 25 H 1.07993 * 119.98778 * 359.97438 * 4 3 2 26 26 H 1.08001 * 119.90474 * 180.02562 * 5 4 3 27 27 H 1.07994 * 119.92018 * 179.72506 * 6 5 4 28 28 H 1.09003 * 109.47041 * 60.20110 * 9 8 7 29 29 H 1.09003 * 109.47107 * 180.20111 * 9 8 7 30 30 H 1.08998 * 109.47062 * 300.20133 * 9 8 7 31 31 H 1.09002 * 109.47030 * 56.59049 * 10 8 7 32 32 H 1.09001 * 109.46915 * 176.58833 * 10 8 7 33 33 H 1.08997 * 109.47048 * 296.58861 * 10 8 7 34 34 H 0.96998 * 119.99405 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.47300 * 303.40630 * 21 20 19 36 36 H 1.09005 * 109.47191 * 63.40671 * 21 20 19 37 37 H 1.09001 * 109.47210 * 183.40397 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2939 2.3744 0.0005 5 6 1.9231 3.6059 0.0011 6 6 3.3037 3.6816 -0.0051 7 6 4.0625 2.5263 -0.0004 8 6 5.5670 2.6127 -0.0008 9 6 6.1099 2.0465 -1.3144 10 6 5.9939 4.0753 0.1393 11 6 6.1161 1.8162 1.1546 12 1 5.4422 1.3206 1.8377 13 6 7.4791 1.7201 1.3398 14 7 8.2998 2.3241 0.5084 15 14 8.1598 0.7322 2.7716 16 1 8.3687 -0.6753 2.3469 17 1 9.4548 1.3161 3.2045 18 1 7.1971 0.7706 3.9017 19 6 3.4381 1.2868 -0.0005 20 16 4.4024 -0.1880 -0.0005 21 6 4.1264 -0.8558 -1.6644 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 0.2154 2.3192 0.0005 26 1 1.3343 4.5114 0.0019 27 1 3.7904 4.6456 -0.0091 28 1 5.7155 2.6249 -2.1499 29 1 7.1983 2.1057 -1.3132 30 1 5.8027 1.0057 -1.4159 31 1 5.5569 4.4961 1.0449 32 1 7.0807 4.1323 0.1999 33 1 5.6482 4.6393 -0.7269 34 1 9.2586 2.2562 0.6385 35 1 3.0576 -0.9936 -1.8280 36 1 4.5207 -0.1601 -2.4052 37 1 4.6353 -1.8150 -1.7599 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260107949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:16 Heat of formation + Delta-G solvation = -6.521934 kcal Electronic energy + Delta-G solvation = -18956.622297 eV Core-core repulsion = 16211.981493 eV Total energy + Delta-G solvation = -2744.640805 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.72570 -37.63462 -34.85942 -31.46956 -30.38891 -28.45062 -28.13778 -27.16466 -25.62090 -25.02914 -22.25554 -21.72924 -19.18670 -17.35604 -16.43787 -15.88601 -15.54829 -15.45456 -14.77477 -14.35075 -13.54526 -13.51334 -13.11395 -12.96623 -12.77754 -12.50037 -12.09812 -11.88110 -11.58696 -11.24237 -10.97307 -10.96043 -10.73575 -10.71254 -10.53417 -10.30707 -10.03993 -9.67078 -9.48387 -9.15855 -8.85997 -8.23990 -7.93219 -7.69025 -6.32204 -5.85661 -3.86751 1.65065 2.02397 2.70859 3.39326 3.45654 3.50448 3.50894 3.61317 4.34756 4.55883 5.08909 5.22149 5.28539 5.39391 5.43326 5.52922 5.77587 5.80227 5.82640 5.92076 6.19043 6.32911 6.42142 6.64125 6.77367 6.81904 6.91390 6.99107 7.06547 7.28587 7.38870 7.47685 7.70474 7.74396 7.85694 8.16745 8.27224 8.52988 9.02025 9.68949 11.15026 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.008289 C = 0.007161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.203351 B = 3377.260670 C = 3908.878255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.307 6.307 3 C 0.148 3.852 4 C -0.241 4.241 5 C -0.069 4.069 6 C -0.174 4.174 7 C 0.048 3.952 8 C 0.097 3.903 9 C -0.140 4.140 10 C -0.134 4.134 11 C -0.463 4.463 12 H 0.057 0.943 13 C 0.067 3.933 14 N -0.888 5.888 15 Si 0.886 3.114 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.276 1.276 19 C -0.145 4.145 20 S -0.069 6.069 21 C -0.166 4.166 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.095 0.905 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.129 0.871 28 H -0.002 1.002 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.087 0.913 33 H 0.012 0.988 34 H 0.258 0.742 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.017 -1.354 -3.211 12.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.220 6.220 3 C 0.100 3.900 4 C -0.261 4.261 5 C -0.088 4.088 6 C -0.194 4.194 7 C 0.045 3.955 8 C 0.097 3.903 9 C -0.198 4.198 10 C -0.191 4.191 11 C -0.503 4.503 12 H 0.075 0.925 13 C -0.133 4.133 14 N -0.528 5.528 15 Si 0.715 3.285 16 H -0.206 1.206 17 H -0.215 1.215 18 H -0.201 1.201 19 C -0.257 4.257 20 S 0.167 5.833 21 C -0.333 4.333 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.113 0.887 25 H 0.137 0.863 26 H 0.134 0.866 27 H 0.146 0.854 28 H 0.017 0.983 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.031 0.969 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.081 -2.078 -2.444 11.536 hybrid contribution -0.927 0.249 -0.188 0.978 sum -12.008 -1.829 -2.632 12.429 Atomic orbital electron populations 1.22977 0.79504 1.03289 1.00952 1.86199 1.20294 1.26963 1.88557 1.19058 0.91833 0.83986 0.95169 1.20909 0.98990 0.92411 1.13804 1.20958 0.94859 0.96341 0.96626 1.21247 0.93029 0.99150 1.05995 1.20877 0.98980 0.89749 0.85864 1.17335 0.83185 0.93995 0.95791 1.22071 1.04574 0.99500 0.93631 1.21924 1.04494 0.96159 0.96563 1.20817 0.91254 1.28478 1.09765 0.92470 1.24753 0.96791 0.95613 0.96170 1.69794 1.02717 1.43741 1.36528 0.86662 0.78205 0.80611 0.83049 1.20555 1.21522 1.20079 1.20895 0.91315 0.98686 1.14774 1.85982 1.60996 1.19912 1.16413 1.23758 1.03732 1.03978 1.01857 0.92946 0.93172 0.88701 0.86327 0.86557 0.85364 0.98254 0.89039 0.92792 0.95348 0.89451 0.96901 0.93179 0.91874 0.91152 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.32 16 2 O -0.31 -5.17 9.54 -19.77 -0.19 -5.35 16 3 C 0.15 2.78 6.69 -39.07 -0.26 2.52 16 4 C -0.24 -3.93 9.04 -39.47 -0.36 -4.29 16 5 C -0.07 -1.14 10.04 -39.55 -0.40 -1.53 16 6 C -0.17 -3.37 8.97 -39.58 -0.36 -3.72 16 7 C 0.05 1.07 4.73 -104.43 -0.49 0.58 16 8 C 0.10 2.35 0.48 -156.81 -0.08 2.28 16 9 C -0.14 -3.35 8.04 37.15 0.30 -3.05 16 10 C -0.13 -3.12 6.97 37.16 0.26 -2.86 16 11 C -0.46 -12.25 5.93 -34.44 -0.20 -12.46 16 12 H 0.06 1.58 6.75 -52.49 -0.35 1.23 16 13 C 0.07 1.79 5.14 -17.82 -0.09 1.70 16 14 N -0.89 -24.03 9.34 55.43 0.52 -23.51 16 15 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C -0.14 -3.11 5.34 -38.96 -0.21 -3.31 16 20 S -0.07 -1.49 16.32 -107.50 -1.75 -3.25 16 21 C -0.17 -2.92 10.36 101.05 1.05 -1.87 16 22 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 23 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.12 1.55 6.30 -52.49 -0.33 1.22 16 26 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.13 2.34 5.92 -52.49 -0.31 2.03 16 28 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.09 2.39 5.94 -51.93 -0.31 2.08 16 30 H 0.05 1.26 4.00 -47.63 -0.19 1.07 16 31 H 0.03 0.63 7.58 -51.93 -0.39 0.24 16 32 H 0.09 2.23 6.12 -51.93 -0.32 1.91 16 33 H 0.01 0.26 7.46 -51.93 -0.39 -0.13 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.06 1.04 7.81 -51.92 -0.41 0.64 16 36 H 0.07 1.25 7.12 -51.92 -0.37 0.88 16 37 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 LS Contribution 298.71 15.07 4.50 4.50 Total: -1.00 -28.47 298.71 -6.78 -35.25 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -4.99 Total: 0.67 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 0.15 Total: -24.71 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.52 Total: -23.51 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.19 Total: -5.35 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -1.75 Total: -3.25 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.47 -6.78 -35.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.732 kcal (2) G-P(sol) polarization free energy of solvation -28.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds