Wall clock time and date at job start Mon Mar 30 2020 06:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36009 * 117.00113 * 2 1 4 4 C 1.38487 * 120.08154 * 0.02562 * 3 2 1 5 5 C 1.38298 * 120.02185 * 179.97438 * 4 3 2 6 6 C 1.38272 * 120.19543 * 0.29609 * 5 4 3 7 7 C 1.38211 * 120.15954 * 359.44933 * 6 5 4 8 8 C 1.50700 * 120.01142 * 180.27630 * 7 6 5 9 9 C 1.52992 * 109.47186 * 245.81741 * 8 7 6 10 10 C 1.53006 * 109.46922 * 5.81918 * 8 7 6 11 11 C 1.50697 * 109.46577 * 125.81572 * 8 7 6 12 12 H 1.07994 * 120.00895 * 358.39086 * 11 8 7 13 13 C 1.37889 * 119.99582 * 178.39244 * 11 8 7 14 14 N 1.31513 * 119.99860 * 0.02562 * 13 11 8 15 15 Si 1.86804 * 119.99733 * 180.02562 * 13 11 8 16 16 H 1.48495 * 109.46811 * 90.00138 * 15 13 11 17 17 H 1.48501 * 109.46646 * 209.99956 * 15 13 11 18 18 H 1.48499 * 109.47336 * 329.99983 * 15 13 11 19 19 C 1.38791 * 119.96984 * 0.52906 * 7 6 5 20 20 S 1.76210 * 120.08861 * 179.77105 * 19 7 6 21 21 C 1.81398 * 102.99654 * 250.27596 * 20 19 7 22 22 H 1.09003 * 109.46670 * 299.99385 * 1 2 3 23 23 H 1.09001 * 109.47337 * 59.99653 * 1 2 3 24 24 H 1.08998 * 109.47219 * 180.02562 * 1 2 3 25 25 H 1.07993 * 119.98778 * 359.97438 * 4 3 2 26 26 H 1.08001 * 119.90474 * 180.02562 * 5 4 3 27 27 H 1.07994 * 119.92018 * 179.72506 * 6 5 4 28 28 H 1.09003 * 109.47041 * 60.20110 * 9 8 7 29 29 H 1.09003 * 109.47107 * 180.20111 * 9 8 7 30 30 H 1.08998 * 109.47062 * 300.20133 * 9 8 7 31 31 H 1.09002 * 109.47030 * 56.59049 * 10 8 7 32 32 H 1.09001 * 109.46915 * 176.58833 * 10 8 7 33 33 H 1.08997 * 109.47048 * 296.58861 * 10 8 7 34 34 H 0.96998 * 119.99405 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.47300 * 303.40630 * 21 20 19 36 36 H 1.09005 * 109.47191 * 63.40671 * 21 20 19 37 37 H 1.09001 * 109.47210 * 183.40397 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2939 2.3744 0.0005 5 6 1.9231 3.6059 0.0011 6 6 3.3037 3.6816 -0.0051 7 6 4.0625 2.5263 -0.0004 8 6 5.5670 2.6127 -0.0008 9 6 6.1099 2.0465 -1.3144 10 6 5.9939 4.0753 0.1393 11 6 6.1161 1.8162 1.1546 12 1 5.4422 1.3206 1.8377 13 6 7.4791 1.7201 1.3398 14 7 8.2998 2.3241 0.5084 15 14 8.1598 0.7322 2.7716 16 1 8.3687 -0.6753 2.3469 17 1 9.4548 1.3161 3.2045 18 1 7.1971 0.7706 3.9017 19 6 3.4381 1.2868 -0.0005 20 16 4.4024 -0.1880 -0.0005 21 6 4.1264 -0.8558 -1.6644 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 0.2154 2.3192 0.0005 26 1 1.3343 4.5114 0.0019 27 1 3.7904 4.6456 -0.0091 28 1 5.7155 2.6249 -2.1499 29 1 7.1983 2.1057 -1.3132 30 1 5.8027 1.0057 -1.4159 31 1 5.5569 4.4961 1.0449 32 1 7.0807 4.1323 0.1999 33 1 5.6482 4.6393 -0.7269 34 1 9.2586 2.2562 0.6385 35 1 3.0576 -0.9936 -1.8280 36 1 4.5207 -0.1601 -2.4052 37 1 4.6353 -1.8150 -1.7599 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260107949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:16 Heat of formation + Delta-G solvation = -21.510105 kcal Electronic energy + Delta-G solvation = -18957.272233 eV Core-core repulsion = 16211.981493 eV Total energy + Delta-G solvation = -2745.290740 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.05970 -39.07516 -36.52130 -33.33903 -31.76649 -29.98687 -29.58678 -28.28888 -27.34615 -27.02779 -23.73924 -23.18113 -20.78951 -18.85302 -18.04831 -17.46769 -16.93637 -16.65030 -16.59442 -15.85309 -15.18000 -14.94933 -14.66496 -14.47645 -14.27167 -13.86227 -13.50881 -13.42614 -13.15841 -12.88292 -12.75844 -12.62982 -12.50096 -12.25127 -12.09839 -11.95037 -11.80760 -11.44189 -11.27860 -10.79388 -10.72649 -10.25960 -9.45834 -9.06873 -8.01948 -7.85031 -5.91621 0.24540 0.61075 1.19175 1.43855 1.47388 1.54276 2.07536 2.41940 2.53717 2.94151 3.37910 4.00829 4.09731 4.33104 4.41336 4.42722 4.43657 4.47320 4.54921 4.70283 4.74202 4.88279 4.92980 4.94493 5.09132 5.19353 5.22989 5.31069 5.49381 5.58037 5.68629 5.78325 5.83070 5.94111 6.27666 6.33274 6.49705 6.57518 6.99073 7.64235 9.11207 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.008289 C = 0.007161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.203351 B = 3377.260670 C = 3908.878255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.145 3.855 4 C -0.230 4.230 5 C -0.057 4.057 6 C -0.189 4.189 7 C 0.016 3.984 8 C 0.092 3.908 9 C -0.130 4.130 10 C -0.123 4.123 11 C -0.463 4.463 12 H 0.038 0.962 13 C 0.029 3.971 14 N -0.906 5.906 15 Si 0.928 3.072 16 H -0.282 1.282 17 H -0.285 1.285 18 H -0.280 1.280 19 C -0.165 4.165 20 S -0.136 6.136 21 C -0.143 4.143 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.118 0.882 25 H 0.159 0.841 26 H 0.159 0.841 27 H 0.133 0.867 28 H 0.007 0.993 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.028 0.972 32 H 0.060 0.940 33 H 0.030 0.970 34 H 0.256 0.744 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.935 -1.123 -3.622 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.239 6.239 3 C 0.096 3.904 4 C -0.250 4.250 5 C -0.075 4.075 6 C -0.209 4.209 7 C 0.013 3.987 8 C 0.092 3.908 9 C -0.188 4.188 10 C -0.181 4.181 11 C -0.502 4.502 12 H 0.056 0.944 13 C -0.169 4.169 14 N -0.546 5.546 15 Si 0.756 3.244 16 H -0.208 1.208 17 H -0.210 1.210 18 H -0.205 1.205 19 C -0.277 4.277 20 S 0.099 5.901 21 C -0.310 4.310 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.136 0.864 25 H 0.177 0.823 26 H 0.177 0.823 27 H 0.151 0.849 28 H 0.026 0.974 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.008 -1.842 -2.847 14.412 hybrid contribution -0.210 0.124 -0.103 0.264 sum -14.217 -1.719 -2.950 14.622 Atomic orbital electron populations 1.23363 0.76601 1.05446 1.02318 1.86178 1.23252 1.26289 1.88193 1.19144 0.91122 0.85570 0.94595 1.21365 1.00876 0.91313 1.11472 1.21391 0.93818 0.98178 0.94099 1.21378 0.94534 0.98296 1.06664 1.20710 0.97813 0.91319 0.88864 1.17253 0.85321 0.93631 0.94609 1.21929 1.02766 0.99808 0.94335 1.21765 1.02610 0.96332 0.97379 1.20887 0.90997 1.28354 1.09974 0.94405 1.25231 0.97210 0.96625 0.97820 1.69900 1.02556 1.44724 1.37456 0.86009 0.77665 0.79558 0.81138 1.20772 1.21033 1.20498 1.20912 0.92639 0.97538 1.16603 1.85971 1.62798 1.21699 1.19586 1.23645 1.04755 1.04220 0.98415 0.91747 0.91409 0.86429 0.82349 0.82326 0.84945 0.97410 0.91586 0.92747 0.95268 0.92080 0.95061 0.93438 0.90599 0.91632 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -10.13 9.54 -93.65 -0.89 -11.02 16 3 C 0.14 5.09 6.69 22.60 0.15 5.24 16 4 C -0.23 -6.55 9.04 22.34 0.20 -6.35 16 5 C -0.06 -1.63 10.04 22.29 0.22 -1.41 16 6 C -0.19 -6.94 8.97 22.27 0.20 -6.74 16 7 C 0.02 0.69 4.73 -19.74 -0.09 0.60 16 8 C 0.09 4.53 0.48 -53.68 -0.03 4.50 16 9 C -0.13 -6.38 8.04 71.98 0.58 -5.80 16 10 C -0.12 -5.81 6.97 71.98 0.50 -5.31 16 11 C -0.46 -25.12 5.93 25.60 0.15 -24.96 16 12 H 0.04 2.17 6.75 -2.91 -0.02 2.15 16 13 C 0.03 1.60 5.14 84.66 0.44 2.03 16 14 N -0.91 -50.44 9.34 21.45 0.20 -50.24 16 15 Si 0.93 44.97 29.54 68.60 2.03 46.99 16 16 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 17 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 18 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 19 C -0.16 -6.99 5.34 22.67 0.12 -6.87 16 20 S -0.14 -5.93 16.32 -56.49 -0.92 -6.85 16 21 C -0.14 -4.90 10.36 113.37 1.17 -3.73 16 22 H 0.06 1.07 7.66 -2.39 -0.02 1.05 16 23 H 0.07 1.05 7.66 -2.39 -0.02 1.03 16 24 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.16 3.20 6.30 -2.91 -0.02 3.18 16 26 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 27 H 0.13 4.61 5.92 -2.91 -0.02 4.60 16 28 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.07 3.55 5.94 -2.39 -0.01 3.53 16 30 H 0.05 2.61 4.00 -5.12 -0.02 2.59 16 31 H 0.03 1.31 7.58 -2.39 -0.02 1.29 16 32 H 0.06 3.19 6.12 -2.39 -0.01 3.17 16 33 H 0.03 1.30 7.46 -2.39 -0.02 1.28 16 34 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 35 H 0.07 2.39 7.81 -2.39 -0.02 2.37 16 36 H 0.06 2.29 7.12 -2.39 -0.02 2.28 16 37 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -63.29 298.71 6.20 -57.09 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 1.06 Total: 11.38 kcal Atomic # 6 Polarization: -52.10 SS G_CDS: 4.73 Total: -47.36 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.20 Total: -50.24 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.89 Total: -11.02 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: -5.93 SS G_CDS: -0.92 Total: -6.85 kcal Total: -63.29 6.20 -57.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.584 kcal (2) G-P(sol) polarization free energy of solvation -63.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds