Wall clock time and date at job start Mon Mar 30 2020 06:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76204 * 102.99878 * 2 1 4 4 C 1.39037 * 120.04951 * 0.02562 * 3 2 1 5 5 C 1.38091 * 120.02474 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.13807 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94876 * 179.97438 * 6 5 4 8 8 C 1.38781 * 120.10392 * 0.27284 * 6 5 4 9 9 O 1.35901 * 120.01933 * 179.72767 * 8 6 5 10 10 C 1.38597 * 119.97011 * 359.48900 * 8 6 5 11 11 C 1.50700 * 120.07150 * 180.25117 * 10 8 6 12 12 C 1.53002 * 109.46888 * 352.64085 * 11 10 8 13 13 C 1.52997 * 109.46993 * 112.63708 * 11 10 8 14 14 C 1.50695 * 109.47744 * 232.63907 * 11 10 8 15 15 H 1.08006 * 119.99221 * 2.81844 * 14 11 10 16 16 C 1.37877 * 120.00462 * 182.81526 * 14 11 10 17 17 N 1.31509 * 119.99734 * 0.02562 * 16 14 11 18 18 Si 1.86793 * 120.00146 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47275 * 90.00153 * 18 16 14 20 20 H 1.48499 * 109.47212 * 210.00038 * 18 16 14 21 21 H 1.48500 * 109.47520 * 330.00267 * 18 16 14 22 22 H 1.09000 * 109.47284 * 60.00274 * 1 2 3 23 23 H 1.09001 * 109.47097 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47273 * 299.99322 * 1 2 3 25 25 H 1.07992 * 119.98652 * 359.95519 * 4 3 2 26 26 H 1.08007 * 119.92670 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.47145 * 89.99732 * 7 6 5 28 28 H 1.08992 * 109.47235 * 209.99626 * 7 6 5 29 29 H 1.09001 * 109.46836 * 329.99926 * 7 6 5 30 30 H 0.96705 * 113.99631 * 83.90377 * 9 8 6 31 31 H 1.08998 * 109.47186 * 67.02917 * 12 11 10 32 32 H 1.09002 * 109.47232 * 187.02499 * 12 11 10 33 33 H 1.08992 * 109.47335 * 307.02777 * 12 11 10 34 34 H 1.09002 * 109.47152 * 59.99764 * 13 11 10 35 35 H 1.08993 * 109.47486 * 180.02562 * 13 11 10 36 36 H 1.09006 * 109.47426 * 300.00595 * 13 11 10 37 37 H 0.96998 * 120.00471 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1943 2.6660 0.0005 5 6 1.5054 4.0114 0.0011 6 6 2.8265 4.4182 0.0016 7 6 3.1613 5.8875 0.0016 8 6 3.8451 3.4756 -0.0041 9 8 5.1433 3.8774 -0.0092 10 6 3.5378 2.1241 0.0003 11 6 4.6421 1.0986 -0.0001 12 6 5.9888 1.7994 -0.1906 13 6 4.6418 0.3483 1.3332 14 6 4.4204 0.1220 -1.1261 15 1 3.5909 0.2590 -1.8042 16 6 5.2763 -0.9464 -1.2908 17 7 6.2859 -1.1134 -0.4648 18 14 5.0009 -2.1573 -2.6861 19 1 5.7386 -1.7001 -3.8912 20 1 5.4950 -3.4983 -2.2825 21 1 3.5504 -2.2363 -2.9941 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 0.1613 2.3509 0.0002 26 1 0.7149 4.7473 0.0019 27 1 3.2415 6.2419 1.0293 28 1 4.1099 6.0440 -0.5117 29 1 2.3744 6.4394 -0.5126 30 1 5.4951 4.0821 0.8681 31 1 6.2068 2.4115 0.6845 32 1 6.7726 1.0524 -0.3159 33 1 5.9463 2.4335 -1.0761 34 1 3.6824 -0.1509 1.4690 35 1 5.4407 -0.3931 1.3331 36 1 4.8022 1.0547 2.1478 37 1 6.8879 -1.8651 -0.5803 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260123176.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:39 Heat of formation + Delta-G solvation = -11.241494 kcal Electronic energy + Delta-G solvation = -19074.616174 eV Core-core repulsion = 16329.770714 eV Total energy + Delta-G solvation = -2744.845460 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.66093 -36.13264 -35.45247 -32.17312 -30.94047 -28.76409 -28.12677 -26.56470 -25.43655 -25.02863 -22.11322 -21.11538 -19.13220 -17.81862 -16.30591 -15.64973 -15.28453 -15.01355 -14.47985 -14.27966 -13.45377 -13.25607 -13.08369 -12.97264 -12.62458 -12.22067 -12.08204 -11.87747 -11.68125 -11.32583 -11.18288 -11.00303 -10.84983 -10.66266 -10.50608 -10.21851 -9.87219 -9.65768 -9.30620 -8.78108 -8.64225 -8.61619 -8.14400 -7.76821 -6.38570 -5.90985 -3.96752 1.73741 1.99428 2.35882 3.27534 3.38247 3.41935 3.47820 4.14245 4.49180 4.91925 5.25639 5.35537 5.42769 5.52512 5.54376 5.59035 5.73728 5.82436 6.03912 6.08787 6.23305 6.39932 6.55778 6.73613 6.80911 6.91501 6.98446 7.06777 7.21208 7.27334 7.38925 7.61770 7.75252 7.83046 8.20211 8.25579 8.34765 8.50411 8.99592 9.62802 11.07369 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.009451 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.936223 B = 2961.845086 C = 3930.088828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 S -0.014 6.014 3 C -0.078 4.078 4 C -0.149 4.149 5 C -0.114 4.114 6 C -0.134 4.134 7 C -0.104 4.104 8 C 0.111 3.889 9 O -0.479 6.479 10 C -0.035 4.035 11 C 0.094 3.906 12 C -0.110 4.110 13 C -0.137 4.137 14 C -0.482 4.482 15 H 0.067 0.933 16 C 0.070 3.930 17 N -0.881 5.881 18 Si 0.886 3.114 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.269 1.269 22 H 0.069 0.931 23 H 0.093 0.907 24 H 0.066 0.934 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.374 0.626 31 H 0.012 0.988 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.094 0.906 36 H 0.002 0.998 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.354 7.553 3.278 11.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.375 4.375 2 S 0.234 5.766 3 C -0.191 4.191 4 C -0.173 4.173 5 C -0.134 4.134 6 C -0.138 4.138 7 C -0.160 4.160 8 C 0.064 3.936 9 O -0.289 6.289 10 C -0.041 4.041 11 C 0.094 3.906 12 C -0.168 4.168 13 C -0.195 4.195 14 C -0.524 4.524 15 H 0.085 0.915 16 C -0.131 4.131 17 N -0.519 5.519 18 Si 0.714 3.286 19 H -0.209 1.209 20 H -0.213 1.213 21 H -0.194 1.194 22 H 0.088 0.912 23 H 0.111 0.889 24 H 0.086 0.914 25 H 0.133 0.867 26 H 0.132 0.868 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.230 0.770 31 H 0.031 0.969 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.112 0.888 36 H 0.021 0.979 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.698 6.231 2.720 9.544 hybrid contribution -1.071 0.637 -0.279 1.277 sum -7.769 6.868 2.441 10.653 Atomic orbital electron populations 1.24091 1.04263 1.05351 1.03793 1.87161 0.97468 1.01319 1.90618 1.21642 0.95534 0.97480 1.04435 1.21018 0.97771 0.93110 1.05421 1.20513 0.95013 0.94997 1.02849 1.20154 0.93311 0.95657 1.04660 1.20583 1.02198 0.91874 1.01384 1.18043 0.83399 0.90441 1.01694 1.85249 1.22638 1.87947 1.33062 1.20669 0.94196 0.94331 0.94923 1.17348 0.88561 0.89738 0.94968 1.21916 0.99359 0.97469 0.98019 1.21994 1.02916 1.00232 0.94353 1.21047 1.11381 1.07878 1.12082 0.91536 1.24836 0.94939 0.97376 0.95986 1.69818 1.15582 1.30029 1.36496 0.86661 0.78868 0.80507 0.82584 1.20873 1.21335 1.19408 0.91157 0.88861 0.91447 0.86727 0.86790 0.92180 0.91248 0.92286 0.76992 0.96915 0.91522 0.94039 0.93766 0.88787 0.97855 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.12 9.15 101.05 0.92 -2.19 16 2 S -0.01 -0.28 16.67 -107.50 -1.79 -2.07 16 3 C -0.08 -1.60 5.75 -39.06 -0.22 -1.83 16 4 C -0.15 -2.62 9.36 -39.34 -0.37 -2.99 16 5 C -0.11 -1.85 9.68 -39.64 -0.38 -2.24 16 6 C -0.13 -2.27 5.90 -104.42 -0.62 -2.89 16 7 C -0.10 -1.37 9.79 36.01 0.35 -1.01 16 8 C 0.11 2.17 6.49 -39.25 -0.25 1.91 16 9 O -0.48 -8.70 7.84 -19.43 -0.15 -8.85 16 10 C -0.04 -0.78 4.74 -104.26 -0.49 -1.27 16 11 C 0.09 2.28 0.48 -156.81 -0.08 2.21 16 12 C -0.11 -2.63 6.69 37.16 0.25 -2.38 16 13 C -0.14 -3.28 8.03 37.16 0.30 -2.98 16 14 C -0.48 -12.71 5.83 -34.44 -0.20 -12.91 16 15 H 0.07 1.81 6.62 -52.48 -0.35 1.47 16 16 C 0.07 1.88 5.12 -17.82 -0.09 1.79 16 17 N -0.88 -23.88 9.34 55.43 0.52 -23.36 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H 0.07 1.00 7.75 -51.92 -0.40 0.60 16 23 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 24 H 0.07 0.92 7.75 -51.92 -0.40 0.52 16 25 H 0.11 1.76 5.87 -52.49 -0.31 1.45 16 26 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.93 7.51 -51.93 -0.39 0.54 16 29 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.37 5.29 8.19 45.56 0.37 5.67 16 31 H 0.01 0.26 6.12 -51.93 -0.32 -0.06 16 32 H 0.07 1.75 6.16 -51.93 -0.32 1.43 16 33 H 0.04 1.01 6.67 -51.93 -0.35 0.66 16 34 H 0.04 1.04 5.63 -51.61 -0.29 0.75 16 35 H 0.09 2.45 5.85 -51.93 -0.30 2.15 16 36 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 37 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 294.72 15.07 4.44 4.44 Total: -1.00 -28.39 294.72 -7.19 -35.58 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.30 Total: 4.90 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: -0.89 Total: -26.78 kcal Atomic # 7 Polarization: -23.88 SS G_CDS: 0.52 Total: -23.36 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.15 Total: -8.85 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -1.79 Total: -2.07 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.39 -7.19 -35.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260123176.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.338 kcal (2) G-P(sol) polarization free energy of solvation -28.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds