Wall clock time and date at job start Mon Mar 30 2020 06:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76204 * 102.99878 * 2 1 4 4 C 1.39037 * 120.04951 * 0.02562 * 3 2 1 5 5 C 1.38091 * 120.02474 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.13807 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94876 * 179.97438 * 6 5 4 8 8 C 1.38781 * 120.10392 * 0.27284 * 6 5 4 9 9 O 1.35901 * 120.01933 * 179.72767 * 8 6 5 10 10 C 1.38597 * 119.97011 * 359.48900 * 8 6 5 11 11 C 1.50700 * 120.07150 * 180.25117 * 10 8 6 12 12 C 1.53002 * 109.46888 * 352.64085 * 11 10 8 13 13 C 1.52997 * 109.46993 * 112.63708 * 11 10 8 14 14 C 1.50695 * 109.47744 * 232.63907 * 11 10 8 15 15 H 1.08006 * 119.99221 * 2.81844 * 14 11 10 16 16 C 1.37877 * 120.00462 * 182.81526 * 14 11 10 17 17 N 1.31509 * 119.99734 * 0.02562 * 16 14 11 18 18 Si 1.86793 * 120.00146 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47275 * 90.00153 * 18 16 14 20 20 H 1.48499 * 109.47212 * 210.00038 * 18 16 14 21 21 H 1.48500 * 109.47520 * 330.00267 * 18 16 14 22 22 H 1.09000 * 109.47284 * 60.00274 * 1 2 3 23 23 H 1.09001 * 109.47097 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47273 * 299.99322 * 1 2 3 25 25 H 1.07992 * 119.98652 * 359.95519 * 4 3 2 26 26 H 1.08007 * 119.92670 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.47145 * 89.99732 * 7 6 5 28 28 H 1.08992 * 109.47235 * 209.99626 * 7 6 5 29 29 H 1.09001 * 109.46836 * 329.99926 * 7 6 5 30 30 H 0.96705 * 113.99631 * 83.90377 * 9 8 6 31 31 H 1.08998 * 109.47186 * 67.02917 * 12 11 10 32 32 H 1.09002 * 109.47232 * 187.02499 * 12 11 10 33 33 H 1.08992 * 109.47335 * 307.02777 * 12 11 10 34 34 H 1.09002 * 109.47152 * 59.99764 * 13 11 10 35 35 H 1.08993 * 109.47486 * 180.02562 * 13 11 10 36 36 H 1.09006 * 109.47426 * 300.00595 * 13 11 10 37 37 H 0.96998 * 120.00471 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1943 2.6660 0.0005 5 6 1.5054 4.0114 0.0011 6 6 2.8265 4.4182 0.0016 7 6 3.1613 5.8875 0.0016 8 6 3.8451 3.4756 -0.0041 9 8 5.1433 3.8774 -0.0092 10 6 3.5378 2.1241 0.0003 11 6 4.6421 1.0986 -0.0001 12 6 5.9888 1.7994 -0.1906 13 6 4.6418 0.3483 1.3332 14 6 4.4204 0.1220 -1.1261 15 1 3.5909 0.2590 -1.8042 16 6 5.2763 -0.9464 -1.2908 17 7 6.2859 -1.1134 -0.4648 18 14 5.0009 -2.1573 -2.6861 19 1 5.7386 -1.7001 -3.8912 20 1 5.4950 -3.4983 -2.2825 21 1 3.5504 -2.2363 -2.9941 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 0.1613 2.3509 0.0002 26 1 0.7149 4.7473 0.0019 27 1 3.2415 6.2419 1.0293 28 1 4.1099 6.0440 -0.5117 29 1 2.3744 6.4394 -0.5126 30 1 5.4951 4.0821 0.8681 31 1 6.2068 2.4115 0.6845 32 1 6.7726 1.0524 -0.3159 33 1 5.9463 2.4335 -1.0761 34 1 3.6824 -0.1509 1.4690 35 1 5.4407 -0.3931 1.3331 36 1 4.8022 1.0547 2.1478 37 1 6.8879 -1.8651 -0.5803 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260123176.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:38 Heat of formation + Delta-G solvation = -27.183621 kcal Electronic energy + Delta-G solvation = -19075.307477 eV Core-core repulsion = 16329.770714 eV Total energy + Delta-G solvation = -2745.536762 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.11120 -37.52963 -37.18767 -33.79127 -32.51285 -30.23823 -29.42080 -27.98370 -27.28141 -26.89553 -23.63138 -22.49657 -20.84866 -19.25479 -18.04183 -17.30831 -16.76048 -16.71382 -15.99948 -15.76597 -15.01834 -14.63728 -14.37507 -14.34990 -14.08880 -13.67778 -13.45943 -13.38441 -13.13843 -13.02082 -12.76362 -12.66200 -12.57225 -12.40808 -12.12829 -12.04522 -11.67661 -11.45431 -11.00600 -10.64335 -10.24722 -10.04916 -10.01499 -9.25200 -7.97731 -7.84687 -6.00291 0.36064 0.57739 0.94417 1.41793 1.44796 1.54494 1.93844 2.50593 2.77760 3.34484 3.57018 4.05115 4.14278 4.26554 4.38749 4.40381 4.59011 4.78933 4.83347 4.90605 4.93456 4.95423 5.06231 5.14387 5.24476 5.28739 5.31246 5.48043 5.51211 5.71299 5.72909 5.77737 5.82053 6.03235 6.28369 6.35447 6.55095 6.98480 7.02475 7.60474 9.06275 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.009451 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.936223 B = 2961.845086 C = 3930.088828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 S -0.095 6.095 3 C -0.089 4.089 4 C -0.149 4.149 5 C -0.106 4.106 6 C -0.132 4.132 7 C -0.100 4.100 8 C 0.097 3.903 9 O -0.489 6.489 10 C -0.074 4.074 11 C 0.092 3.908 12 C -0.095 4.095 13 C -0.126 4.126 14 C -0.483 4.483 15 H 0.050 0.950 16 C 0.028 3.972 17 N -0.903 5.903 18 Si 0.930 3.070 19 H -0.284 1.284 20 H -0.285 1.285 21 H -0.269 1.269 22 H 0.081 0.919 23 H 0.110 0.890 24 H 0.086 0.914 25 H 0.140 0.860 26 H 0.155 0.845 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.390 0.610 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.028 0.972 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.012 0.988 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.865 9.682 3.503 14.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.347 4.347 2 S 0.151 5.849 3 C -0.202 4.202 4 C -0.173 4.173 5 C -0.125 4.125 6 C -0.135 4.135 7 C -0.156 4.156 8 C 0.051 3.949 9 O -0.301 6.301 10 C -0.080 4.080 11 C 0.091 3.909 12 C -0.153 4.153 13 C -0.184 4.184 14 C -0.523 4.523 15 H 0.069 0.931 16 C -0.171 4.171 17 N -0.543 5.543 18 Si 0.758 3.242 19 H -0.211 1.211 20 H -0.211 1.211 21 H -0.193 1.193 22 H 0.100 0.900 23 H 0.128 0.872 24 H 0.105 0.895 25 H 0.158 0.842 26 H 0.173 0.827 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.248 0.752 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.031 0.969 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.180 8.374 2.941 12.769 hybrid contribution -0.453 0.092 -0.313 0.558 sum -9.633 8.466 2.629 13.091 Atomic orbital electron populations 1.23982 0.98459 1.07024 1.05260 1.87154 1.03148 1.03333 1.91229 1.21671 0.95801 0.97241 1.05509 1.21360 0.98257 0.93307 1.04382 1.21005 0.95780 0.95199 1.00518 1.20552 0.92973 0.97168 1.02834 1.20635 1.02641 0.89349 1.02976 1.18219 0.84392 0.90196 1.02075 1.85165 1.22630 1.87812 1.34498 1.20581 0.94262 0.94919 0.98274 1.17233 0.89545 0.90150 0.93950 1.21755 0.98608 0.96533 0.98382 1.21812 1.01760 0.99781 0.95074 1.21139 1.10534 1.08394 1.12234 0.93147 1.25364 0.95165 0.98811 0.97723 1.69937 1.16275 1.30424 1.37673 0.85963 0.78538 0.79142 0.80592 1.21077 1.21119 1.19330 0.89981 0.87162 0.89532 0.84234 0.82740 0.90059 0.91863 0.90080 0.75164 0.94599 0.94660 0.95303 0.93882 0.91470 0.96860 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.87 9.15 113.37 1.04 -3.83 16 2 S -0.10 -3.82 16.67 -56.49 -0.94 -4.76 16 3 C -0.09 -3.58 5.75 22.61 0.13 -3.45 16 4 C -0.15 -4.77 9.36 22.43 0.21 -4.56 16 5 C -0.11 -2.97 9.68 22.23 0.22 -2.76 16 6 C -0.13 -4.03 5.90 -19.74 -0.12 -4.15 16 7 C -0.10 -2.21 9.79 71.24 0.70 -1.51 16 8 C 0.10 3.68 6.49 22.49 0.15 3.83 16 9 O -0.49 -17.31 7.84 -92.43 -0.72 -18.03 16 10 C -0.07 -3.27 4.74 -19.63 -0.09 -3.36 16 11 C 0.09 4.54 0.48 -53.68 -0.03 4.52 16 12 C -0.10 -4.66 6.69 71.98 0.48 -4.18 16 13 C -0.13 -6.22 8.03 71.98 0.58 -5.64 16 14 C -0.48 -26.24 5.83 25.60 0.15 -26.09 16 15 H 0.05 2.84 6.62 -2.91 -0.02 2.82 16 16 C 0.03 1.55 5.12 84.66 0.43 1.98 16 17 N -0.90 -51.01 9.34 21.45 0.20 -50.81 16 18 Si 0.93 44.64 29.54 68.60 2.03 46.67 16 19 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 21 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 22 H 0.08 2.05 7.75 -2.39 -0.02 2.03 16 23 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 24 H 0.09 2.04 7.75 -2.39 -0.02 2.02 16 25 H 0.14 3.67 5.87 -2.91 -0.02 3.65 16 26 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 27 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.50 7.51 -2.39 -0.02 1.49 16 29 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 30 H 0.39 10.55 8.19 -74.05 -0.61 9.94 16 31 H 0.04 1.52 6.12 -2.39 -0.01 1.50 16 32 H 0.03 1.91 6.16 -2.39 -0.01 1.90 16 33 H 0.03 1.43 6.67 -2.39 -0.02 1.41 16 34 H 0.04 2.09 5.63 -2.59 -0.01 2.08 16 35 H 0.07 3.66 5.85 -2.39 -0.01 3.64 16 36 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -63.76 294.72 4.88 -58.88 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.48 Total: 17.26 kcal Atomic # 6 Polarization: -53.05 SS G_CDS: 3.84 Total: -49.21 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.20 Total: -50.81 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.72 Total: -18.03 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: -3.82 SS G_CDS: -0.94 Total: -4.76 kcal Total: -63.76 4.88 -58.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260123176.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.701 kcal (2) G-P(sol) polarization free energy of solvation -63.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds