Wall clock time and date at job start Mon Mar 30 2020 07:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 H 1.08999 * 108.81682 * 300.00044 * 9 7 2 11 11 C 1.45876 * 108.84157 * 58.48354 * 9 7 2 12 12 C 1.54516 * 111.67839 * 182.31672 * 11 9 7 13 13 C 1.50537 * 108.85455 * 282.73924 * 12 11 9 14 14 C 1.53917 * 112.93624 * 91.75681 * 13 12 11 15 15 N 1.47945 * 113.33228 * 317.76583 * 14 13 12 16 16 C 1.46895 * 110.99881 * 192.17648 * 15 14 13 17 17 C 1.50697 * 109.47433 * 66.04088 * 16 15 14 18 18 C 1.33639 * 122.75019 * 95.00276 * 17 16 15 19 19 S 1.76198 * 107.92551 * 179.97438 * 18 17 16 20 20 C 1.70973 * 90.28160 * 0.02562 * 19 18 17 21 21 N 1.29026 * 110.16914 * 359.72994 * 20 19 18 22 22 C 1.44398 * 113.55677 * 318.12766 * 15 14 13 23 23 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.03754 * 302.87662 * 11 9 7 25 25 H 1.09000 * 109.04113 * 61.75160 * 11 9 7 26 26 H 1.09002 * 109.57770 * 42.54553 * 12 11 9 27 27 H 1.08994 * 109.57397 * 162.92769 * 12 11 9 28 28 H 1.08999 * 108.79072 * 212.65105 * 13 12 11 29 29 H 1.09009 * 108.79008 * 330.98231 * 13 12 11 30 30 H 1.09004 * 108.70416 * 78.75468 * 14 13 12 31 31 H 1.08993 * 108.71104 * 196.76171 * 14 13 12 32 32 H 1.09010 * 109.47005 * 186.04394 * 16 15 14 33 33 H 1.08997 * 109.47124 * 306.04101 * 16 15 14 34 34 H 1.08001 * 126.03743 * 359.97438 * 18 17 16 35 35 H 1.08003 * 124.91671 * 180.02562 * 20 19 18 36 36 H 1.09001 * 109.79637 * 335.77182 * 22 15 14 37 37 H 1.09001 * 109.63824 * 215.16745 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 1 3.8629 -0.6824 -0.8912 11 6 3.9832 -0.4664 1.1782 12 6 5.5254 -0.3766 1.2123 13 6 6.0797 -1.6992 1.6701 14 6 6.3965 -2.6527 0.5041 15 7 5.3558 -2.6585 -0.5474 16 6 5.5550 -3.7766 -1.4790 17 6 5.3388 -5.0796 -0.7534 18 6 4.1677 -5.7234 -0.7568 19 16 4.3518 -7.1891 0.2036 20 6 5.9849 -6.7901 0.5149 21 7 6.2906 -5.6803 -0.0679 22 6 4.0091 -2.6509 -0.0265 23 1 -0.4850 0.8400 0.0004 24 1 3.5687 0.5415 1.1619 25 1 3.6369 -0.9775 2.0765 26 1 5.9002 -0.1494 0.2143 27 1 5.8303 0.4069 1.9060 28 1 6.9943 -1.5199 2.2354 29 1 5.3511 -2.1777 2.3247 30 1 7.3445 -2.3544 0.0563 31 1 6.5016 -3.6636 0.8978 32 1 4.8434 -3.6960 -2.3009 33 1 6.5706 -3.7445 -1.8733 34 1 3.2675 -5.4020 -1.2595 35 1 6.6638 -7.3838 1.1091 36 1 4.0011 -3.0637 0.9822 37 1 3.3632 -3.2457 -0.6724 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260130967.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:51 Heat of formation + Delta-G solvation = 58.027941 kcal Electronic energy + Delta-G solvation = -18835.548967 eV Core-core repulsion = 16126.000006 eV Total energy + Delta-G solvation = -2709.548961 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.18206 -38.23739 -34.66600 -32.98252 -31.12101 -30.45216 -27.35431 -26.07586 -24.79162 -24.09429 -22.37702 -19.70665 -19.58057 -19.00051 -17.78032 -16.79627 -15.96600 -15.73579 -14.75862 -14.57484 -14.43984 -13.66268 -13.44872 -13.24840 -12.97274 -12.92098 -12.70040 -12.23194 -11.86636 -11.53690 -11.36044 -10.97089 -10.87490 -10.51537 -10.21229 -10.06769 -9.83953 -9.69589 -9.62585 -9.42493 -8.97911 -8.92182 -8.75875 -8.48531 -7.68128 -6.01725 -4.00185 0.73936 1.41315 1.74776 2.81090 3.33020 3.44482 3.48601 4.20931 4.46158 4.47252 5.08728 5.20414 5.26553 5.36473 5.39225 5.45653 5.67634 5.78364 5.92426 5.94420 6.03566 6.10673 6.15424 6.24566 6.34266 6.47091 6.57987 6.58879 6.70330 6.99998 7.12774 7.39324 7.49529 7.67235 7.73041 7.84575 7.99828 8.57446 9.01308 9.61372 11.11553 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025024 B = 0.006238 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.679513 B = 4487.898660 C = 5178.614927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.262 1.262 6 H -0.301 1.301 7 C -0.513 4.513 8 H 0.070 0.930 9 C 0.017 3.983 10 H 0.035 0.965 11 C -0.105 4.105 12 C -0.119 4.119 13 C -0.113 4.113 14 C 0.061 3.939 15 N -0.531 5.531 16 C 0.131 3.869 17 C 0.031 3.969 18 C -0.234 4.234 19 S 0.103 5.897 20 C 0.011 3.989 21 N -0.459 5.459 22 C 0.084 3.916 23 H 0.262 0.738 24 H 0.041 0.959 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.180 0.820 35 H 0.195 0.805 36 H 0.028 0.972 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.378 -11.768 0.514 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.133 4.133 3 Si 0.721 3.279 4 H -0.209 1.209 5 H -0.187 1.187 6 H -0.230 1.230 7 C -0.552 4.552 8 H 0.088 0.912 9 C -0.003 4.003 10 H 0.053 0.947 11 C -0.142 4.142 12 C -0.157 4.157 13 C -0.151 4.151 14 C -0.067 4.067 15 N -0.253 5.253 16 C 0.000 4.000 17 C -0.102 4.102 18 C -0.374 4.374 19 S 0.355 5.645 20 C -0.287 4.287 21 N -0.174 5.174 22 C -0.043 4.043 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.197 0.803 35 H 0.212 0.788 36 H 0.046 0.954 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.188 -11.861 0.629 17.019 hybrid contribution 0.284 0.873 0.291 0.963 sum 12.472 -10.989 0.920 16.647 Atomic orbital electron populations 1.69899 1.06297 1.26819 1.51382 1.25010 0.94686 0.99048 0.94595 0.86785 0.79993 0.83432 0.77681 1.20950 1.18728 1.22957 1.21127 0.89072 0.94276 1.50707 0.91227 1.18041 0.95809 0.91614 0.94806 0.94658 1.20971 0.92412 0.99875 1.00938 1.21420 0.97705 0.95466 1.01110 1.21339 1.00236 0.96488 0.97067 1.22408 0.94275 0.98314 0.91654 1.61273 1.04574 1.39646 1.19833 1.21034 1.03059 0.81467 0.94446 1.21536 0.88451 0.99985 1.00264 1.27088 1.03869 0.98616 1.07800 1.83992 1.11211 1.23413 1.45902 1.28362 0.98316 0.97693 1.04370 1.66250 1.34316 1.07465 1.09328 1.21843 0.86053 0.99277 0.97119 0.92814 0.94064 0.92996 0.91371 0.93612 0.92562 0.92615 0.91969 0.93856 0.88898 0.89745 0.80257 0.78819 0.95380 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.88 13.96 55.43 0.77 -27.11 16 2 C 0.07 1.96 5.44 -17.82 -0.10 1.86 16 3 Si 0.89 22.51 24.36 -169.99 -4.14 18.37 16 4 H -0.28 -6.99 6.91 56.52 0.39 -6.60 16 5 H -0.26 -6.41 6.49 56.52 0.37 -6.04 16 6 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 7 C -0.51 -14.34 9.00 -34.44 -0.31 -14.65 16 8 H 0.07 2.09 7.91 -52.49 -0.42 1.67 16 9 C 0.02 0.39 1.45 -94.63 -0.14 0.26 16 10 H 0.04 0.88 7.13 -51.93 -0.37 0.51 16 11 C -0.10 -2.33 4.08 -29.31 -0.12 -2.45 16 12 C -0.12 -2.19 5.63 -27.17 -0.15 -2.35 16 13 C -0.11 -1.85 5.28 -27.48 -0.15 -1.99 16 14 C 0.06 0.98 5.32 -2.77 -0.01 0.96 16 15 N -0.53 -9.22 4.18 -236.00 -0.99 -10.20 16 16 C 0.13 1.94 5.57 -4.98 -0.03 1.91 16 17 C 0.03 0.44 4.93 -84.23 -0.41 0.03 16 18 C -0.23 -3.13 10.05 29.12 0.29 -2.84 16 19 S 0.10 1.13 23.22 -107.50 -2.50 -1.37 16 20 C 0.01 0.12 12.23 51.58 0.63 0.75 16 21 N -0.46 -6.43 9.01 -11.90 -0.11 -6.53 16 22 C 0.08 1.69 3.82 -4.65 -0.02 1.67 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.04 0.98 2.74 -51.93 -0.14 0.84 16 25 H 0.05 1.16 7.59 -51.93 -0.39 0.77 16 26 H 0.07 1.29 7.78 -51.93 -0.40 0.88 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.96 6.65 -51.92 -0.35 0.61 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.71 5.78 -51.93 -0.30 0.40 16 32 H 0.09 1.31 8.01 -51.92 -0.42 0.89 16 33 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 34 H 0.18 2.30 7.73 -52.49 -0.41 1.90 16 35 H 0.20 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.03 0.58 6.78 -51.93 -0.35 0.23 16 37 H 0.06 1.26 6.14 -51.93 -0.32 0.94 16 LS Contribution 291.17 15.07 4.39 4.39 Total: -1.00 -30.99 291.17 -8.24 -39.23 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.16 Total: 0.06 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -0.51 Total: -16.83 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: -0.32 Total: -43.85 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.14 Total: 18.37 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.50 Total: -1.37 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.99 -8.24 -39.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260130967.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.259 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds