Wall clock time and date at job start Mon Mar 30 2020 07:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 H 1.08999 * 108.81682 * 300.00044 * 9 7 2 11 11 C 1.45876 * 108.84157 * 58.48354 * 9 7 2 12 12 C 1.54516 * 111.67839 * 182.31672 * 11 9 7 13 13 C 1.50537 * 108.85455 * 282.73924 * 12 11 9 14 14 C 1.53917 * 112.93624 * 91.75681 * 13 12 11 15 15 N 1.47945 * 113.33228 * 317.76583 * 14 13 12 16 16 C 1.46895 * 110.99881 * 192.17648 * 15 14 13 17 17 C 1.50697 * 109.47433 * 66.04088 * 16 15 14 18 18 C 1.33639 * 122.75019 * 95.00276 * 17 16 15 19 19 S 1.76198 * 107.92551 * 179.97438 * 18 17 16 20 20 C 1.70973 * 90.28160 * 0.02562 * 19 18 17 21 21 N 1.29026 * 110.16914 * 359.72994 * 20 19 18 22 22 C 1.44398 * 113.55677 * 318.12766 * 15 14 13 23 23 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.03754 * 302.87662 * 11 9 7 25 25 H 1.09000 * 109.04113 * 61.75160 * 11 9 7 26 26 H 1.09002 * 109.57770 * 42.54553 * 12 11 9 27 27 H 1.08994 * 109.57397 * 162.92769 * 12 11 9 28 28 H 1.08999 * 108.79072 * 212.65105 * 13 12 11 29 29 H 1.09009 * 108.79008 * 330.98231 * 13 12 11 30 30 H 1.09004 * 108.70416 * 78.75468 * 14 13 12 31 31 H 1.08993 * 108.71104 * 196.76171 * 14 13 12 32 32 H 1.09010 * 109.47005 * 186.04394 * 16 15 14 33 33 H 1.08997 * 109.47124 * 306.04101 * 16 15 14 34 34 H 1.08001 * 126.03743 * 359.97438 * 18 17 16 35 35 H 1.08003 * 124.91671 * 180.02562 * 20 19 18 36 36 H 1.09001 * 109.79637 * 335.77182 * 22 15 14 37 37 H 1.09001 * 109.63824 * 215.16745 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 1 3.8629 -0.6824 -0.8912 11 6 3.9832 -0.4664 1.1782 12 6 5.5254 -0.3766 1.2123 13 6 6.0797 -1.6992 1.6701 14 6 6.3965 -2.6527 0.5041 15 7 5.3558 -2.6585 -0.5474 16 6 5.5550 -3.7766 -1.4790 17 6 5.3388 -5.0796 -0.7534 18 6 4.1677 -5.7234 -0.7568 19 16 4.3518 -7.1891 0.2036 20 6 5.9849 -6.7901 0.5149 21 7 6.2906 -5.6803 -0.0679 22 6 4.0091 -2.6509 -0.0265 23 1 -0.4850 0.8400 0.0004 24 1 3.5687 0.5415 1.1619 25 1 3.6369 -0.9775 2.0765 26 1 5.9002 -0.1494 0.2143 27 1 5.8303 0.4069 1.9060 28 1 6.9943 -1.5199 2.2354 29 1 5.3511 -2.1777 2.3247 30 1 7.3445 -2.3544 0.0563 31 1 6.5016 -3.6636 0.8978 32 1 4.8434 -3.6960 -2.3009 33 1 6.5706 -3.7445 -1.8733 34 1 3.2675 -5.4020 -1.2595 35 1 6.6638 -7.3838 1.1091 36 1 4.0011 -3.0637 0.9822 37 1 3.3632 -3.2457 -0.6724 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260130967.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:51 Heat of formation + Delta-G solvation = 37.047036 kcal Electronic energy + Delta-G solvation = -18836.458767 eV Core-core repulsion = 16126.000006 eV Total energy + Delta-G solvation = -2710.458761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.29857 -39.65159 -36.23139 -34.71467 -33.02258 -31.56957 -28.64319 -27.77698 -25.99386 -25.53807 -23.98742 -21.27607 -20.84522 -20.28888 -19.03468 -18.65799 -17.49142 -16.82438 -16.31760 -16.12587 -15.77639 -14.96873 -14.91514 -14.65499 -14.46662 -14.27330 -14.18706 -13.80076 -13.32961 -13.00750 -12.82982 -12.78190 -12.23543 -12.02051 -11.83987 -11.73913 -11.53395 -11.38603 -10.90781 -10.74074 -10.67617 -10.62182 -10.37355 -9.84770 -9.05841 -8.27596 -6.29936 -0.21008 0.49170 0.80624 1.30784 1.37640 1.48973 1.79255 2.34408 3.08255 3.11425 3.33241 3.92517 4.04289 4.12394 4.16312 4.23811 4.40388 4.41525 4.46790 4.59518 4.71874 4.76942 4.84119 4.89506 4.96262 5.02978 5.13412 5.18341 5.24586 5.41114 5.47826 5.59070 5.75831 5.83534 6.26453 6.30102 6.42287 6.76547 6.78069 7.35364 8.89074 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025024 B = 0.006238 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.679513 B = 4487.898660 C = 5178.614927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.011 3.989 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.247 1.247 6 H -0.303 1.303 7 C -0.516 4.516 8 H 0.032 0.968 9 C 0.022 3.978 10 H 0.024 0.976 11 C -0.108 4.108 12 C -0.110 4.110 13 C -0.111 4.111 14 C 0.063 3.937 15 N -0.540 5.540 16 C 0.132 3.868 17 C 0.021 3.979 18 C -0.261 4.261 19 S 0.144 5.856 20 C 0.017 3.983 21 N -0.485 5.485 22 C 0.105 3.895 23 H 0.264 0.736 24 H 0.026 0.974 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.174 0.826 35 H 0.231 0.769 36 H 0.018 0.982 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.209 -12.133 1.182 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.171 1.171 6 H -0.232 1.232 7 C -0.555 4.555 8 H 0.051 0.949 9 C 0.002 3.998 10 H 0.042 0.958 11 C -0.145 4.145 12 C -0.148 4.148 13 C -0.149 4.149 14 C -0.064 4.064 15 N -0.262 5.262 16 C 0.001 3.999 17 C -0.112 4.112 18 C -0.402 4.402 19 S 0.397 5.603 20 C -0.281 4.281 21 N -0.199 5.199 22 C -0.023 4.023 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.192 0.808 35 H 0.247 0.753 36 H 0.036 0.964 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.041 -12.254 1.298 19.445 hybrid contribution -0.648 0.809 0.090 1.040 sum 14.394 -11.445 1.388 18.442 Atomic orbital electron populations 1.70046 1.08106 1.27800 1.53356 1.25838 0.95389 1.02849 0.94490 0.85768 0.79114 0.78824 0.78268 1.19831 1.17094 1.23150 1.21488 0.91752 0.92787 1.49426 0.94945 1.17981 0.92677 0.94114 0.95001 0.95774 1.20907 0.95713 0.98337 0.99533 1.21336 0.94204 0.97441 1.01791 1.21332 1.01222 0.95187 0.97162 1.22451 0.94215 0.98406 0.91352 1.61160 1.03251 1.41424 1.20368 1.21000 1.03793 0.81257 0.93849 1.21401 0.88940 1.00040 1.00804 1.27196 1.03716 1.00358 1.08904 1.83849 1.10744 1.21330 1.44408 1.29009 0.98981 0.96931 1.03145 1.66257 1.34487 1.08717 1.10474 1.21421 0.87808 0.96550 0.96508 0.92751 0.95594 0.93906 0.91544 0.91449 0.89394 0.93936 0.90316 0.93792 0.88999 0.88410 0.80822 0.75282 0.96355 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.54 13.96 21.45 0.30 -60.24 16 2 C 0.01 0.63 5.44 84.65 0.46 1.09 16 3 Si 0.95 46.78 24.36 68.60 1.67 48.45 16 4 H -0.27 -12.80 6.91 99.48 0.69 -12.11 16 5 H -0.25 -11.40 6.49 99.48 0.65 -10.76 16 6 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 7 C -0.52 -29.78 9.00 25.60 0.23 -29.55 16 8 H 0.03 2.05 7.91 -2.91 -0.02 2.03 16 9 C 0.02 1.03 1.45 -13.39 -0.02 1.01 16 10 H 0.02 1.20 7.13 -2.39 -0.02 1.18 16 11 C -0.11 -4.67 4.08 28.93 0.12 -4.55 16 12 C -0.11 -3.73 5.63 30.31 0.17 -3.56 16 13 C -0.11 -3.29 5.28 30.11 0.16 -3.13 16 14 C 0.06 1.85 5.32 86.41 0.46 2.31 16 15 N -0.54 -18.06 4.18 -900.58 -3.76 -21.83 16 16 C 0.13 3.76 5.57 85.56 0.48 4.24 16 17 C 0.02 0.60 4.93 41.52 0.20 0.80 16 18 C -0.26 -6.92 10.05 66.78 0.67 -6.25 16 19 S 0.14 2.90 23.22 -56.49 -1.31 1.59 16 20 C 0.02 0.33 12.23 130.65 1.60 1.93 16 21 N -0.48 -12.53 9.01 -191.55 -1.73 -14.26 16 22 C 0.11 4.24 3.82 87.10 0.33 4.57 16 23 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 24 H 0.03 1.20 2.74 -2.39 -0.01 1.19 16 25 H 0.04 1.90 7.59 -2.39 -0.02 1.88 16 26 H 0.07 2.30 7.78 -2.39 -0.02 2.28 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.04 1.37 6.65 -2.38 -0.02 1.36 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.04 1.32 5.78 -2.39 -0.01 1.30 16 32 H 0.09 2.58 8.01 -2.38 -0.02 2.56 16 33 H 0.10 2.51 8.12 -2.39 -0.02 2.49 16 34 H 0.17 4.64 7.73 -2.91 -0.02 4.62 16 35 H 0.23 2.61 8.06 -2.91 -0.02 2.59 16 36 H 0.02 0.76 6.78 -2.39 -0.02 0.74 16 37 H 0.05 2.19 6.14 -2.39 -0.01 2.17 16 Total: -1.00 -67.90 291.17 1.01 -66.89 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.98 Total: 10.49 kcal Atomic # 6 Polarization: -35.95 SS G_CDS: 4.86 Total: -31.09 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -5.19 Total: -96.32 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.67 Total: 48.45 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.31 Total: 1.59 kcal Total: -67.90 1.01 -66.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260130967.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.934 kcal (2) G-P(sol) polarization free energy of solvation -67.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds