Wall clock time and date at job start Mon Mar 30 2020 07:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.04281 * 60.72543 * 9 7 2 11 11 C 1.54509 * 109.05370 * 301.80795 * 9 7 2 12 12 C 1.50462 * 108.85092 * 162.26868 * 11 9 7 13 13 C 1.54297 * 113.03708 * 92.15458 * 12 11 9 14 14 C 1.54073 * 112.28383 * 318.30093 * 13 12 11 15 15 N 1.44268 * 111.97937 * 318.91238 * 14 13 12 16 16 C 1.46895 * 111.00400 * 219.31286 * 15 14 13 17 17 C 1.50702 * 109.47052 * 48.01752 * 16 15 14 18 18 C 1.33634 * 122.75126 * 95.00169 * 17 16 15 19 19 S 1.76195 * 107.92788 * 180.02562 * 18 17 16 20 20 C 1.70972 * 90.28212 * 359.97438 * 19 18 17 21 21 N 1.29034 * 110.16903 * 359.73778 * 20 19 18 22 22 C 1.45860 * 109.05699 * 179.72111 * 9 7 2 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.56746 * 282.07718 * 11 9 7 25 25 H 1.08995 * 109.57907 * 42.45220 * 11 9 7 26 26 H 1.08993 * 108.76878 * 331.23329 * 12 11 9 27 27 H 1.09002 * 108.76672 * 213.06906 * 12 11 9 28 28 H 1.08998 * 108.91788 * 197.57806 * 13 12 11 29 29 H 1.08994 * 108.91612 * 79.02242 * 13 12 11 30 30 H 1.09001 * 108.97811 * 198.27558 * 14 13 12 31 31 H 1.08996 * 108.91202 * 79.51485 * 14 13 12 32 32 H 1.08995 * 109.47655 * 168.02053 * 16 15 14 33 33 H 1.09002 * 109.47377 * 288.02467 * 16 15 14 34 34 H 1.08006 * 126.03426 * 0.02562 * 18 17 16 35 35 H 1.08002 * 124.91516 * 180.02562 * 20 19 18 36 36 H 1.09007 * 108.78950 * 302.75463 * 22 9 7 37 37 H 1.09003 * 108.79055 * 61.08969 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6406 -2.5534 -0.9069 11 6 0.3268 -2.5536 1.2317 12 6 -0.7195 -3.6121 1.0107 13 6 -0.3082 -4.9925 1.5640 14 6 1.1679 -5.3230 1.2714 15 7 1.5561 -4.9272 -0.0605 16 6 2.4443 -5.9265 -0.6689 17 6 1.8557 -7.3013 -0.4830 18 6 1.1013 -7.8964 -1.4118 19 16 0.6247 -9.4758 -0.7931 20 6 1.4878 -9.1793 0.6527 21 7 2.0476 -8.0176 0.6064 22 6 2.2067 -3.6010 -0.0102 23 1 -0.4850 0.8401 -0.0004 24 1 0.9146 -2.8001 2.1160 25 1 -0.1559 -1.5862 1.3698 26 1 -0.9047 -3.7041 -0.0594 27 1 -1.6429 -3.2997 1.4985 28 1 -0.9384 -5.7572 1.1100 29 1 -0.4654 -5.0019 2.6425 30 1 1.3190 -6.3970 1.3801 31 1 1.7965 -4.8019 1.9935 32 1 2.5510 -5.7179 -1.7334 33 1 3.4226 -5.8825 -0.1903 34 1 0.8315 -7.4823 -2.3721 35 1 1.5584 -9.8668 1.4826 36 1 2.8586 -3.4965 -0.8776 37 1 2.8136 -3.5434 0.8934 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260130970.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:54 Heat of formation + Delta-G solvation = 57.077212 kcal Electronic energy + Delta-G solvation = -18561.413121 eV Core-core repulsion = 15851.822934 eV Total energy + Delta-G solvation = -2709.590187 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.21485 -38.06179 -34.25043 -32.72930 -31.01564 -30.39696 -27.11976 -25.93994 -24.64526 -23.89812 -22.51819 -19.63624 -19.29723 -18.60963 -17.92977 -16.43904 -15.80012 -15.56956 -14.77078 -14.38057 -13.88571 -13.78404 -13.59068 -13.25391 -12.91180 -12.48709 -12.45139 -12.10305 -11.44546 -11.19029 -11.02501 -10.94459 -10.73128 -10.41435 -10.34629 -9.93280 -9.74182 -9.59133 -9.38339 -9.25933 -9.06934 -8.82178 -8.56748 -8.18863 -7.60943 -5.91135 -3.99397 0.70299 1.35644 1.68113 2.73888 3.33430 3.40284 3.43250 4.15456 4.44808 4.74785 5.03758 5.20854 5.34990 5.36780 5.66841 5.74354 5.78863 5.90572 6.03552 6.14386 6.21754 6.37397 6.42500 6.52821 6.63203 6.77270 6.91834 7.09159 7.39755 7.46480 7.63111 7.66804 7.74657 7.82350 7.86333 8.18965 8.31655 8.56338 9.05957 9.64779 11.12824 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040789 B = 0.004578 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.301125 B = 6114.135009 C = 6385.836993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.048 3.952 10 H 0.031 0.969 11 C -0.107 4.107 12 C -0.099 4.099 13 C -0.102 4.102 14 C 0.043 3.957 15 N -0.524 5.524 16 C 0.126 3.874 17 C 0.073 3.927 18 C -0.230 4.230 19 S 0.100 5.900 20 C 0.016 3.984 21 N -0.461 5.461 22 C 0.080 3.920 23 H 0.258 0.742 24 H 0.021 0.979 25 H 0.094 0.906 26 H 0.056 0.944 27 H 0.031 0.969 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.180 0.820 35 H 0.197 0.803 36 H 0.052 0.948 37 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 -17.717 -0.649 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.029 3.971 10 H 0.049 0.951 11 C -0.145 4.145 12 C -0.137 4.137 13 C -0.141 4.141 14 C -0.086 4.086 15 N -0.248 5.248 16 C -0.004 4.004 17 C -0.057 4.057 18 C -0.370 4.370 19 S 0.351 5.649 20 C -0.282 4.282 21 N -0.176 5.176 22 C -0.046 4.046 23 H 0.069 0.931 24 H 0.040 0.960 25 H 0.113 0.887 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.197 0.803 35 H 0.213 0.787 36 H 0.070 0.930 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.009 -18.234 -0.848 18.254 hybrid contribution 1.423 1.629 0.489 2.218 sum 1.432 -16.605 -0.358 16.671 Atomic orbital electron populations 1.69905 1.05790 1.26122 1.50488 1.24919 0.94792 0.98833 0.95271 0.86663 0.79893 0.83806 0.78016 1.20776 1.21300 1.20051 1.21215 0.92687 0.90761 1.50607 0.93009 1.17659 0.93527 0.90654 0.95220 0.95052 1.21365 0.96569 0.99085 0.97485 1.21211 0.98320 0.93573 1.00617 1.21897 0.95414 0.98138 0.98606 1.22167 0.96480 1.00638 0.89306 1.61915 1.39585 1.02184 1.21130 1.20776 0.94273 0.84590 1.00781 1.20300 0.98994 0.97849 0.88554 1.26859 1.06264 0.97431 1.06409 1.83937 1.50483 1.17304 1.13174 1.28334 1.00153 0.97467 1.02260 1.66175 1.22035 1.04676 1.24720 1.21252 0.96919 0.87323 0.99104 0.93146 0.96022 0.88736 0.92517 0.95027 0.94010 0.93648 0.90471 0.94736 0.89353 0.93564 0.80315 0.78651 0.92955 0.95752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.33 11.18 55.43 0.62 -24.71 16 2 C 0.06 1.75 5.21 -17.82 -0.09 1.65 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.12 8.50 -34.44 -0.29 -14.42 16 8 H 0.05 1.40 7.72 -52.49 -0.41 1.00 16 9 C 0.05 1.22 1.87 -94.36 -0.18 1.04 16 10 H 0.03 0.88 7.58 -51.93 -0.39 0.48 16 11 C -0.11 -2.62 4.77 -27.21 -0.13 -2.75 16 12 C -0.10 -2.14 5.42 -27.32 -0.15 -2.29 16 13 C -0.10 -1.90 6.15 -25.49 -0.16 -2.06 16 14 C 0.04 0.80 4.88 -4.67 -0.02 0.78 16 15 N -0.52 -9.89 4.36 -241.00 -1.05 -10.94 16 16 C 0.13 1.99 5.49 -4.98 -0.03 1.96 16 17 C 0.07 1.05 5.16 -84.22 -0.43 0.62 16 18 C -0.23 -2.79 11.11 29.12 0.32 -2.47 16 19 S 0.10 0.96 23.22 -107.50 -2.50 -1.53 16 20 C 0.02 0.17 12.23 51.59 0.63 0.80 16 21 N -0.46 -6.49 8.46 -11.90 -0.10 -6.59 16 22 C 0.08 1.72 4.04 -6.71 -0.03 1.70 16 23 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 24 H 0.02 0.51 7.15 -51.93 -0.37 0.14 16 25 H 0.09 2.60 5.64 -51.93 -0.29 2.31 16 26 H 0.06 1.29 7.38 -51.93 -0.38 0.91 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.35 4.27 -51.93 -0.22 1.13 16 31 H 0.03 0.69 6.50 -51.93 -0.34 0.35 16 32 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 33 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.18 1.90 8.06 -52.48 -0.42 1.48 16 35 H 0.20 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.05 1.09 7.78 -51.93 -0.40 0.69 16 37 H 0.02 0.54 7.23 -51.93 -0.38 0.16 16 LS Contribution 299.19 15.07 4.51 4.51 Total: -1.00 -29.49 299.19 -9.37 -38.86 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.27 Total: -0.46 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -0.55 Total: -15.43 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: -0.53 Total: -42.24 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.50 Total: -1.53 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.49 -9.37 -38.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260130970.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.940 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds