Wall clock time and date at job start Mon Mar 30 2020 07:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.04281 * 60.72543 * 9 7 2 11 11 C 1.54509 * 109.05370 * 301.80795 * 9 7 2 12 12 C 1.50462 * 108.85092 * 162.26868 * 11 9 7 13 13 C 1.54297 * 113.03708 * 92.15458 * 12 11 9 14 14 C 1.54073 * 112.28383 * 318.30093 * 13 12 11 15 15 N 1.44268 * 111.97937 * 318.91238 * 14 13 12 16 16 C 1.46895 * 111.00400 * 219.31286 * 15 14 13 17 17 C 1.50702 * 109.47052 * 48.01752 * 16 15 14 18 18 C 1.33634 * 122.75126 * 95.00169 * 17 16 15 19 19 S 1.76195 * 107.92788 * 180.02562 * 18 17 16 20 20 C 1.70972 * 90.28212 * 359.97438 * 19 18 17 21 21 N 1.29034 * 110.16903 * 359.73778 * 20 19 18 22 22 C 1.45860 * 109.05699 * 179.72111 * 9 7 2 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.56746 * 282.07718 * 11 9 7 25 25 H 1.08995 * 109.57907 * 42.45220 * 11 9 7 26 26 H 1.08993 * 108.76878 * 331.23329 * 12 11 9 27 27 H 1.09002 * 108.76672 * 213.06906 * 12 11 9 28 28 H 1.08998 * 108.91788 * 197.57806 * 13 12 11 29 29 H 1.08994 * 108.91612 * 79.02242 * 13 12 11 30 30 H 1.09001 * 108.97811 * 198.27558 * 14 13 12 31 31 H 1.08996 * 108.91202 * 79.51485 * 14 13 12 32 32 H 1.08995 * 109.47655 * 168.02053 * 16 15 14 33 33 H 1.09002 * 109.47377 * 288.02467 * 16 15 14 34 34 H 1.08006 * 126.03426 * 0.02562 * 18 17 16 35 35 H 1.08002 * 124.91516 * 180.02562 * 20 19 18 36 36 H 1.09007 * 108.78950 * 302.75463 * 22 9 7 37 37 H 1.09003 * 108.79055 * 61.08969 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6406 -2.5534 -0.9069 11 6 0.3268 -2.5536 1.2317 12 6 -0.7195 -3.6121 1.0107 13 6 -0.3082 -4.9925 1.5640 14 6 1.1679 -5.3230 1.2714 15 7 1.5561 -4.9272 -0.0605 16 6 2.4443 -5.9265 -0.6689 17 6 1.8557 -7.3013 -0.4830 18 6 1.1013 -7.8964 -1.4118 19 16 0.6247 -9.4758 -0.7931 20 6 1.4878 -9.1793 0.6527 21 7 2.0476 -8.0176 0.6064 22 6 2.2067 -3.6010 -0.0102 23 1 -0.4850 0.8401 -0.0004 24 1 0.9146 -2.8001 2.1160 25 1 -0.1559 -1.5862 1.3698 26 1 -0.9047 -3.7041 -0.0594 27 1 -1.6429 -3.2997 1.4985 28 1 -0.9384 -5.7572 1.1100 29 1 -0.4654 -5.0019 2.6425 30 1 1.3190 -6.3970 1.3801 31 1 1.7965 -4.8019 1.9935 32 1 2.5510 -5.7179 -1.7334 33 1 3.4226 -5.8825 -0.1903 34 1 0.8315 -7.4823 -2.3721 35 1 1.5584 -9.8668 1.4826 36 1 2.8586 -3.4965 -0.8776 37 1 2.8136 -3.5434 0.8934 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260130970.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:53 Heat of formation + Delta-G solvation = 38.982387 kcal Electronic energy + Delta-G solvation = -18562.197772 eV Core-core repulsion = 15851.822934 eV Total energy + Delta-G solvation = -2710.374838 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.29253 -39.59583 -35.99626 -34.48673 -32.75133 -31.69954 -28.53995 -27.50369 -25.96380 -25.57929 -24.10975 -21.14638 -20.75044 -20.06532 -18.94442 -18.43291 -17.06066 -16.76944 -16.58819 -15.97184 -15.43263 -15.21902 -14.97923 -14.35759 -14.22752 -14.10292 -13.97749 -13.70648 -12.95938 -12.84982 -12.84040 -12.63667 -12.34086 -12.22141 -12.03434 -11.61197 -11.40732 -11.23603 -10.93891 -10.61698 -10.52896 -10.30410 -10.26419 -9.77046 -9.12462 -8.03901 -6.19907 -0.15387 0.54162 0.82645 1.42517 1.43185 1.53176 1.75012 2.44751 3.17346 3.21436 3.37295 4.04955 4.12930 4.19182 4.22680 4.37019 4.50155 4.51962 4.59822 4.65492 4.73124 4.80958 4.92785 5.01815 5.06737 5.12270 5.22339 5.27855 5.51967 5.55452 5.69722 5.78034 5.95924 6.16765 6.30170 6.35411 6.50636 6.80495 6.93557 7.48047 8.99085 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040789 B = 0.004578 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.301125 B = 6114.135009 C = 6385.836993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.016 3.984 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.537 4.537 8 H 0.050 0.950 9 C 0.053 3.947 10 H -0.003 1.003 11 C -0.099 4.099 12 C -0.092 4.092 13 C -0.095 4.095 14 C 0.046 3.954 15 N -0.528 5.528 16 C 0.126 3.874 17 C 0.050 3.950 18 C -0.243 4.243 19 S 0.167 5.833 20 C 0.015 3.985 21 N -0.499 5.499 22 C 0.091 3.909 23 H 0.259 0.741 24 H 0.019 0.981 25 H 0.062 0.938 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.016 0.984 32 H 0.098 0.902 33 H 0.040 0.960 34 H 0.189 0.811 35 H 0.229 0.771 36 H 0.053 0.947 37 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.848 -19.639 -0.541 19.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.183 4.183 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.575 4.575 8 H 0.068 0.932 9 C 0.035 3.965 10 H 0.015 0.985 11 C -0.137 4.137 12 C -0.130 4.130 13 C -0.133 4.133 14 C -0.084 4.084 15 N -0.252 5.252 16 C -0.003 4.003 17 C -0.080 4.080 18 C -0.383 4.383 19 S 0.419 5.581 20 C -0.283 4.283 21 N -0.215 5.215 22 C -0.036 4.036 23 H 0.069 0.931 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.035 0.965 32 H 0.116 0.884 33 H 0.058 0.942 34 H 0.206 0.794 35 H 0.245 0.755 36 H 0.072 0.928 37 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 0.009 -20.184 -0.746 20.198 hybrid contribution 1.379 2.106 0.415 2.551 sum 1.388 -18.078 -0.331 18.134 Atomic orbital electron populations 1.70047 1.07127 1.26904 1.50908 1.25680 0.95614 1.02164 0.94835 0.85644 0.78714 0.79594 0.78203 1.20114 1.20919 1.19460 1.21583 0.92875 0.92216 1.50873 0.93170 1.17557 0.93606 0.91509 0.93871 0.98504 1.21181 0.96947 0.98508 0.97033 1.21066 0.97563 0.94626 0.99705 1.21840 0.95706 0.96275 0.99502 1.22175 0.95977 1.01571 0.88629 1.61808 1.40227 1.01719 1.21451 1.20758 0.93539 0.85176 1.00861 1.20043 1.00686 0.97427 0.89844 1.27110 1.05513 0.99105 1.06539 1.83742 1.48525 1.14462 1.11366 1.28920 0.98866 0.96849 1.03623 1.66117 1.23864 1.06238 1.25264 1.20927 0.95801 0.88183 0.98679 0.93130 0.96223 0.91954 0.94311 0.94484 0.92484 0.92122 0.88635 0.96520 0.88411 0.94159 0.79400 0.75479 0.92805 0.96655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.47 11.18 21.45 0.24 -53.23 16 2 C 0.02 0.90 5.21 84.66 0.44 1.34 16 3 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.54 -30.27 8.50 25.60 0.22 -30.06 16 8 H 0.05 2.77 7.72 -2.91 -0.02 2.75 16 9 C 0.05 2.79 1.87 -13.21 -0.02 2.76 16 10 H 0.00 -0.18 7.58 -2.38 -0.02 -0.20 16 11 C -0.10 -4.97 4.77 30.29 0.14 -4.82 16 12 C -0.09 -3.98 5.42 30.21 0.16 -3.81 16 13 C -0.09 -3.42 6.15 31.40 0.19 -3.23 16 14 C 0.05 1.67 4.88 87.16 0.42 2.09 16 15 N -0.53 -19.99 4.36 -916.40 -4.00 -23.99 16 16 C 0.13 3.95 5.49 85.56 0.47 4.42 16 17 C 0.05 1.37 5.16 41.52 0.21 1.59 16 18 C -0.24 -5.37 11.11 66.77 0.74 -4.63 16 19 S 0.17 2.65 23.22 -56.49 -1.31 1.34 16 20 C 0.01 0.27 12.23 130.65 1.60 1.86 16 21 N -0.50 -13.04 8.46 -191.55 -1.62 -14.66 16 22 C 0.09 4.02 4.04 83.94 0.34 4.36 16 23 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 24 H 0.02 0.95 7.15 -2.39 -0.02 0.94 16 25 H 0.06 3.55 5.64 -2.39 -0.01 3.54 16 26 H 0.04 1.80 7.38 -2.39 -0.02 1.78 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.10 3.21 4.27 -2.39 -0.01 3.20 16 31 H 0.02 0.66 6.50 -2.39 -0.02 0.65 16 32 H 0.10 2.78 8.10 -2.39 -0.02 2.76 16 33 H 0.04 1.29 8.08 -2.39 -0.02 1.27 16 34 H 0.19 3.64 8.06 -2.91 -0.02 3.62 16 35 H 0.23 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.05 2.31 7.78 -2.38 -0.02 2.30 16 37 H 0.02 0.70 7.23 -2.39 -0.02 0.68 16 Total: -1.00 -64.53 299.19 1.31 -63.21 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.06 Total: 9.23 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 4.92 Total: -28.13 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -5.38 Total: -91.88 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -1.31 Total: 1.34 kcal Total: -64.53 1.31 -63.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260130970.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.193 kcal (2) G-P(sol) polarization free energy of solvation -64.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds